RNA–Protein interactions for RNA: ENST00000304060.9

ZNF440-201, Transcript of zinc finger protein 440, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF440, Length 4,189 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF440-201ENST00000304060 CEP170Q5SW79 1584 aa9.95□□□□□ -0.82
ZNF440-201ENST00000304060 PLB1Q6P1J6 1458 aa9.95□□□□□ -0.82
ZNF440-201ENST00000304060 CUX1P39880 1505 aa9.93□□□□□ -0.82
ZNF440-201ENST00000304060 FBXO41Q8TF61 875 aa9.92□□□□□ -0.82
ZNF440-201ENST00000304060 ERICH3Q5RHP9 1530 aa9.92□□□□□ -0.82
ZNF440-201ENST00000304060 PBRM1Q86U86 1689 aa9.91□□□□□ -0.82
ZNF440-201ENST00000304060 KIF27Q86VH2 1401 aa9.91□□□□□ -0.82
ZNF440-201ENST00000304060 ARID4BQ4LE39 1312 aaPredicted RBP9.9□□□□□ -0.83
ZNF440-201ENST00000304060 TNIKQ9UKE5 1360 aa9.9□□□□□ -0.83
ZNF440-201ENST00000304060 ADAMTS12P58397 1594 aa9.89□□□□□ -0.83
ZNF440-201ENST00000304060 EHMT2Q96KQ7 1210 aa9.88□□□□□ -0.83
ZNF440-201ENST00000304060 MAPKBP1O60336 1514 aa9.88□□□□□ -0.83
ZNF440-201ENST00000304060 KIAA0586Q9BVV6 1533 aa9.87□□□□□ -0.83
ZNF440-201ENST00000304060 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.87□□□□□ -0.83
ZNF440-201ENST00000304060 HNRNPUL2Q1KMD3 747 aaKnown RBP9.87□□□□□ -0.83
ZNF440-201ENST00000304060 ERCC6L2Q5T890 1561 aa9.85□□□□□ -0.83
ZNF440-201ENST00000304060 KDM4FA0A1W2PPD8 638 aa9.85□□□□□ -0.83
ZNF440-201ENST00000304060 TOP2BQ02880 1626 aa9.85□□□□□ -0.83
ZNF440-201ENST00000304060 ABCA5Q8WWZ7 1642 aa9.84□□□□□ -0.83
ZNF440-201ENST00000304060 ESF1Q9H501 851 aaKnown RBP9.83□□□□□ -0.84
ZNF440-201ENST00000304060 KCNH8Q96L42 1107 aa9.82□□□□□ -0.84
ZNF440-201ENST00000304060 ADGRL1O94910 1474 aa9.81□□□□□ -0.84
ZNF440-201ENST00000304060 DMRT2Q9Y5R5 561 aa9.81□□□□□ -0.84
ZNF440-201ENST00000304060 PHLDB1Q86UU1 1377 aa9.8□□□□□ -0.84
ZNF440-201ENST00000304060 MYT1LQ9UL68 1186 aa9.8□□□□□ -0.84
ZNF440-201ENST00000304060 CARMIL1Q5VZK9 1371 aa9.8□□□□□ -0.84
ZNF440-201ENST00000304060 UACAQ9BZF9 1416 aa9.79□□□□□ -0.84
ZNF440-201ENST00000304060 ASXL2Q76L83 1435 aa9.79□□□□□ -0.84
ZNF440-201ENST00000304060 POGZQ7Z3K3 1410 aa9.79□□□□□ -0.84
ZNF440-201ENST00000304060 ABCC2Q92887 1545 aa9.78□□□□□ -0.84
ZNF440-201ENST00000304060 SHROOM2Q13796 1616 aa9.78□□□□□ -0.84
ZNF440-201ENST00000304060 DIP2BQ9P265 1576 aa9.78□□□□□ -0.84
ZNF440-201ENST00000304060 SLC24A1O60721 1099 aa9.77□□□□□ -0.85
ZNF440-201ENST00000304060 GOLGA3Q08378 1498 aa9.76□□□□□ -0.85
ZNF440-201ENST00000304060 TSPOAP1O95153 1857 aa9.74□□□□□ -0.85
ZNF440-201ENST00000304060 CD109Q6YHK3 1445 aa9.74□□□□□ -0.85
ZNF440-201ENST00000304060 PLPPR3Q6T4P5 718 aa9.73□□□□□ -0.85
ZNF440-201ENST00000304060 CUL7Q14999 1698 aa9.72□□□□□ -0.85
ZNF440-201ENST00000304060 UHRF1BP1LA0JNW5 1464 aa9.72□□□□□ -0.85
ZNF440-201ENST00000304060 LMTK3Q96Q04 1460 aa9.72□□□□□ -0.85
ZNF440-201ENST00000304060 GLI2P10070 1586 aa9.71□□□□□ -0.85
ZNF440-201ENST00000304060 KIF13AQ9H1H9 1805 aa9.71□□□□□ -0.86
ZNF440-201ENST00000304060 DISP3Q9P2K9 1392 aa9.7□□□□□ -0.86
ZNF440-201ENST00000304060 BIVM-ERCC5R4GMW8 1640 aa9.7□□□□□ -0.86
ZNF440-201ENST00000304060 IGF1RP08069 1367 aa9.69□□□□□ -0.86
ZNF440-201ENST00000304060 RUSC2Q8N2Y8 1516 aa9.69□□□□□ -0.86
ZNF440-201ENST00000304060 PLEKHD1A6NEE1 506 aa9.69□□□□□ -0.86
ZNF440-201ENST00000304060 CDK11AQ9UQ88 783 aaPredicted RBP9.68□□□□□ -0.86
ZNF440-201ENST00000304060 HECW2Q9P2P5 1572 aa9.67□□□□□ -0.86
ZNF440-201ENST00000304060 WDR7Q9Y4E6 1490 aa9.67□□□□□ -0.86
ZNF440-201ENST00000304060 IQGAP2Q13576 1575 aa9.66□□□□□ -0.86
ZNF440-201ENST00000304060 EPRSP07814 1512 aaKnown RBP9.66□□□□□ -0.86
ZNF440-201ENST00000304060 ADCY10Q96PN6 1610 aa9.66□□□□□ -0.86
ZNF440-201ENST00000304060 CERKQ8TCT0 537 aa9.65□□□□□ -0.87
ZNF440-201ENST00000304060 RAPGEF2Q9Y4G8 1499 aa9.64□□□□□ -0.87
ZNF440-201ENST00000304060 AKNAQ7Z591 1439 aa9.62□□□□□ -0.87
ZNF440-201ENST00000304060 MAGI3Q5TCQ9 1506 aa9.62□□□□□ -0.87
ZNF440-201ENST00000304060 SOCS7O14512 581 aa9.61□□□□□ -0.87
ZNF440-201ENST00000304060 KDM5BQ9UGL1 1544 aa9.61□□□□□ -0.87
ZNF440-201ENST00000304060 ATP1B4Q9UN42 357 aaPredicted RBP9.6□□□□□ -0.87
ZNF440-201ENST00000304060 MLECQ14165 292 aa9.6□□□□□ -0.87
ZNF440-201ENST00000304060 FANCAO15360 1455 aa9.59□□□□□ -0.87
ZNF440-201ENST00000304060 ARID3CA6NKF2 412 aa9.59□□□□□ -0.87
ZNF440-201ENST00000304060 PHF23Q9BUL5 403 aaPredicted RBP9.57□□□□□ -0.88
ZNF440-201ENST00000304060 NEO1Q92859 1461 aa9.56□□□□□ -0.88
ZNF440-201ENST00000304060 EFCAB2Q5VUJ9 269 aa9.56□□□□□ -0.88
ZNF440-201ENST00000304060 DENND4BO75064 1496 aaPredicted RBP9.55□□□□□ -0.88
ZNF440-201ENST00000304060 PTPRMP28827 1452 aa9.55□□□□□ -0.88
ZNF440-201ENST00000304060 UGGT2Q9NYU1 1516 aa9.54□□□□□ -0.88
ZNF440-201ENST00000304060 P3H3Q8IVL6 736 aa9.54□□□□□ -0.88
ZNF440-201ENST00000304060 CFAP43Q8NDM7 1665 aa9.54□□□□□ -0.88
ZNF440-201ENST00000304060 SCAF1Q9H7N4 1312 aaKnown RBP9.54□□□□□ -0.88
ZNF440-201ENST00000304060 ARAP3Q8WWN8 1544 aa9.53□□□□□ -0.88
ZNF440-201ENST00000304060 RAPGEF3O95398 923 aa9.52□□□□□ -0.89
ZNF440-201ENST00000304060 HSPA2P54652 639 aa9.52□□□□□ -0.89
ZNF440-201ENST00000304060 RANGAP1P46060 587 aaPredicted RBP9.51□□□□□ -0.89
ZNF440-201ENST00000304060 UHRF1BP1Q6BDS2 1440 aa9.5□□□□□ -0.89
ZNF440-201ENST00000304060 PCF11O94913 1555 aaKnown RBP9.5□□□□□ -0.89
ZNF440-201ENST00000304060 MAP3K4Q9Y6R4 1608 aa9.5□□□□□ -0.89
ZNF440-201ENST00000304060 ZCCHC11Q5TAX3 1644 aaKnown RBP9.49□□□□□ -0.89
ZNF440-201ENST00000304060 KIAA0556O60303 1618 aa9.48□□□□□ -0.89
ZNF440-201ENST00000304060 UBAP1LF5GYI3 381 aa9.48□□□□□ -0.89
ZNF440-201ENST00000304060 COL17A1Q9UMD9 1497 aaPredicted RBP9.47□□□□□ -0.89
ZNF440-201ENST00000304060 PELP1Q8IZL8 1130 aaKnown RBP9.47□□□□□ -0.89
ZNF440-201ENST00000304060 EFCAB5A4FU69 1503 aa9.47□□□□□ -0.89
ZNF440-201ENST00000304060 MAGI2Q86UL8 1455 aa9.47□□□□□ -0.89
ZNF440-201ENST00000304060 YEATS2Q9ULM3 1422 aa9.47□□□□□ -0.89
ZNF440-201ENST00000304060 CLIP1P30622 1438 aa9.46□□□□□ -0.89
ZNF440-201ENST00000304060 DISP1Q96F81 1524 aa9.46□□□□□ -0.89
ZNF440-201ENST00000304060 TOM1O60784 492 aa9.46□□□□□ -0.89
ZNF440-201ENST00000304060 CFAP74Q9C0B2 1584 aa9.46□□□□□ -0.9
ZNF440-201ENST00000304060 FOXD1Q16676 465 aa9.45□□□□□ -0.9
ZNF440-201ENST00000304060 CSRNP3Q8WYN3 585 aa9.45□□□□□ -0.9
ZNF440-201ENST00000304060 UBTFP17480 764 aaKnown RBP9.44□□□□□ -0.9
ZNF440-201ENST00000304060 KIF21BO75037 1637 aa9.42□□□□□ -0.9
ZNF440-201ENST00000304060 CNTLNQ9NXG0 1405 aa9.41□□□□□ -0.9
ZNF440-201ENST00000304060 PKD2Q13563 968 aa9.41□□□□□ -0.9
ZNF440-201ENST00000304060 ZFYVE16Q7Z3T8 1539 aa9.41□□□□□ -0.9
ZNF440-201ENST00000304060 EEA1Q15075 1411 aa9.41□□□□□ -0.9
ZNF440-201ENST00000304060 SCAPERQ9BY12 1400 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms