RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 NEUROD1Q13562 356 aa32.75■■■□□ 2.83
TPM4-201ENST00000300933 WDR97A6NE52 1622 aa32.71■■■□□ 2.83
TPM4-201ENST00000300933 CUL7Q14999 1698 aa32.67■■■□□ 2.82
TPM4-201ENST00000300933 ABCA5Q8WWZ7 1642 aa32.65■■■□□ 2.82
TPM4-201ENST00000300933 AQRO60306 1485 aaKnown RBP eCLIP32.64■■■□□ 2.827e-7■■■■□ 21.1
TPM4-201ENST00000300933 CCNB3Q8WWL7 1395 aa32.6■■■□□ 2.81
TPM4-201ENST00000300933 TIAM1Q13009 1591 aa32.59■■■□□ 2.81
TPM4-201ENST00000300933 RRBP1Q9P2E9 1410 aaKnown RBP32.58■■■□□ 2.81
TPM4-201ENST00000300933 PCF11O94913 1555 aaKnown RBP32.58■■■□□ 2.81
TPM4-201ENST00000300933 TARBP1Q13395 1621 aaKnown RBP32.58■■■□□ 2.81
TPM4-201ENST00000300933 FHAD1B1AJZ9 1412 aa32.57■■■□□ 2.8
TPM4-201ENST00000300933 GTF3C3Q9Y5Q9 886 aa32.55■■■□□ 2.8
TPM4-201ENST00000300933 LRRC9Q6ZRR7 1453 aa32.53■■■□□ 2.8
TPM4-201ENST00000300933 MRC2Q9UBG0 1479 aa32.53■■■□□ 2.8
TPM4-201ENST00000300933 CTTNBP2Q8WZ74 1663 aa32.52■■■□□ 2.8
TPM4-201ENST00000300933 PHLDB1Q86UU1 1377 aa32.5■■■□□ 2.79
TPM4-201ENST00000300933 FAM50AQ14320 339 aaKnown RBP32.49■■■□□ 2.79
TPM4-201ENST00000300933 DIEXFQ68CQ4 756 aaKnown RBP32.48■■■□□ 2.79
TPM4-201ENST00000300933 ZNF608Q9ULD9 1512 aaPredicted RBP32.45■■■□□ 2.78
TPM4-201ENST00000300933 EFCAB5A4FU69 1503 aa32.42■■■□□ 2.78
TPM4-201ENST00000300933 DHX57Q6P158 1386 aaKnown RBP32.41■■■□□ 2.78
TPM4-201ENST00000300933 CENPBP07199 599 aaPredicted RBP32.4■■■□□ 2.78
TPM4-201ENST00000300933 MAP3K1Q13233 1512 aa32.4■■■□□ 2.78
TPM4-201ENST00000300933 CASKIN1Q8WXD9 1431 aa32.38■■■□□ 2.77
TPM4-201ENST00000300933 ERCC6Q03468 1493 aa32.35■■■□□ 2.77
TPM4-201ENST00000300933 FYCO1Q9BQS8 1478 aa32.34■■■□□ 2.77
TPM4-201ENST00000300933 ARID3CA6NKF2 412 aa32.34■■■□□ 2.77
TPM4-201ENST00000300933 FMN1Q68DA7 1419 aa32.33■■■□□ 2.77
TPM4-201ENST00000300933 PBRM1Q86U86 1689 aa32.32■■■□□ 2.76
TPM4-201ENST00000300933 ZNF316A6NFI3 1004 aaPredicted RBP32.32■■■□□ 2.76
TPM4-201ENST00000300933 CFAP43Q8NDM7 1665 aa32.29■■■□□ 2.76
TPM4-201ENST00000300933 SNAPC4Q5SXM2 1469 aa32.27■■■□□ 2.76
TPM4-201ENST00000300933 GRIN2BQ13224 1484 aa32.26■■■□□ 2.75
TPM4-201ENST00000300933 SAMD9Q5K651 1589 aa32.24■■■□□ 2.75
TPM4-201ENST00000300933 RAB3GAP2Q9H2M9 1393 aa32.24■■■□□ 2.75
TPM4-201ENST00000300933 MTUS2Q5JR59 1369 aa32.23■■■□□ 2.75
TPM4-201ENST00000300933 IFT140Q96RY7 1462 aa32.22■■■□□ 2.75
TPM4-201ENST00000300933 WDR62O43379 1518 aa32.22■■■□□ 2.75
TPM4-201ENST00000300933 ADAMTS12P58397 1594 aa32.2■■■□□ 2.75
TPM4-201ENST00000300933 FBLN2P98095 1184 aa32.18■■■□□ 2.74
TPM4-201ENST00000300933 LRRIQ1Q96JM4 1722 aa32.14■■■□□ 2.74
TPM4-201ENST00000300933 IQGAP2Q13576 1575 aa32.11■■■□□ 2.73
TPM4-201ENST00000300933 SETD5Q9C0A6 1442 aa32.08■■■□□ 2.73
TPM4-201ENST00000300933 CLSPNQ9HAW4 1339 aa32.07■■■□□ 2.72
TPM4-201ENST00000300933 MYT1Q01538 1121 aa32.07■■■□□ 2.72
TPM4-201ENST00000300933 EIF4G3O43432 1585 aaKnown RBP32.04■■■□□ 2.72
TPM4-201ENST00000300933 YTHDC1Q96MU7 727 aaKnown RBP32.04■■■□□ 2.72
TPM4-201ENST00000300933 CHMP7Q8WUX9 453 aaPredicted RBP32.04■■■□□ 2.72
TPM4-201ENST00000300933 FGD6Q6ZV73 1430 aa32.02■■■□□ 2.72
TPM4-201ENST00000300933 NCOA2Q15596 1464 aa31.99■■■□□ 2.71
TPM4-201ENST00000300933 MAGI3Q5TCQ9 1506 aa31.98■■■□□ 2.71
TPM4-201ENST00000300933 THOC2Q8NI27 1593 aaKnown RBP31.98■■■□□ 2.71
TPM4-201ENST00000300933 SIN3AQ96ST3 1273 aa31.96■■■□□ 2.71
TPM4-201ENST00000300933 CDK13Q14004 1512 aaKnown RBP31.94■■■□□ 2.7
TPM4-201ENST00000300933 GRIN2AQ12879 1464 aa31.94■■■□□ 2.7
TPM4-201ENST00000300933 PTPRKQ15262 1439 aa31.92■■■□□ 2.7
TPM4-201ENST00000300933 MAPKBP1O60336 1514 aa31.9■■■□□ 2.7
TPM4-201ENST00000300933 KIAA0586Q9BVV6 1533 aa31.9■■■□□ 2.7
TPM4-201ENST00000300933 MIER1Q8N108 512 aa31.88■■■□□ 2.69
TPM4-201ENST00000300933 CHIC2Q9UKJ5 165 aa31.88■■■□□ 2.69
TPM4-201ENST00000300933 EPRSP07814 1512 aaKnown RBP31.88■■■□□ 2.69
TPM4-201ENST00000300933 MYOM3Q5VTT5 1437 aa31.87■■■□□ 2.69
TPM4-201ENST00000300933 DISP1Q96F81 1524 aa31.86■■■□□ 2.69
TPM4-201ENST00000300933 UGGT2Q9NYU1 1516 aa31.86■■■□□ 2.69
TPM4-201ENST00000300933 SUPT6HQ7KZ85 1726 aaKnown RBP31.82■■■□□ 2.68
TPM4-201ENST00000300933 EHBP1L1Q8N3D4 1523 aa31.82■■■□□ 2.68
TPM4-201ENST00000300933 HECW1Q76N89 1606 aa31.81■■■□□ 2.68
TPM4-201ENST00000300933 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.81■■■□□ 2.688e-48■■■■□ 23.3
TPM4-201ENST00000300933 CCDC18Q5T9S5 1454 aa31.79■■■□□ 2.68
TPM4-201ENST00000300933 RRP7BPQ9NSQ0 103 aa31.79■■■□□ 2.68
TPM4-201ENST00000300933 MAGI1Q96QZ7 1491 aaPredicted RBP31.76■■■□□ 2.68
TPM4-201ENST00000300933 KIAA0556O60303 1618 aa31.76■■■□□ 2.67
TPM4-201ENST00000300933 SYNJ2O15056 1496 aa31.76■■■□□ 2.67
TPM4-201ENST00000300933 CEP170Q5SW79 1584 aa31.75■■■□□ 2.67
TPM4-201ENST00000300933 JPH4Q96JJ6 628 aa31.74■■■□□ 2.67
TPM4-201ENST00000300933 PTPN23Q9H3S7 1636 aa31.7■■■□□ 2.66
TPM4-201ENST00000300933 NUP153P49790 1475 aaKnown RBP31.67■■■□□ 2.66
TPM4-201ENST00000300933 ARHGEF11O15085 1522 aa31.67■■■□□ 2.66
TPM4-201ENST00000300933 PLB1Q6P1J6 1458 aa31.65■■■□□ 2.66
TPM4-201ENST00000300933 ZNF644Q9H582 1327 aaPredicted RBP31.65■■■□□ 2.66
TPM4-201ENST00000300933 HFM1A2PYH4 1435 aa31.64■■■□□ 2.65
TPM4-201ENST00000300933 NAIPQ13075 1403 aa31.64■■■□□ 2.65
TPM4-201ENST00000300933 RAPGEF6Q8TEU7 1601 aa31.57■■■□□ 2.64
TPM4-201ENST00000300933 PRG4Q92954 1404 aaPredicted RBP31.57■■■□□ 2.64
TPM4-201ENST00000300933 TRIM52Q96A61 297 aa31.55■■■□□ 2.64
TPM4-201ENST00000300933 HIRIP3Q9BW71 556 aaPredicted RBP31.55■■■□□ 2.64
TPM4-201ENST00000300933 NUP160Q12769 1436 aa31.55■■■□□ 2.64
TPM4-201ENST00000300933 CDK11AQ9UQ88 783 aaPredicted RBP31.54■■■□□ 2.64
TPM4-201ENST00000300933 ZNF777Q9ULD5 760 aaPredicted RBP31.5■■■□□ 2.63
TPM4-201ENST00000300933 CARMIL2Q6F5E8 1435 aa31.5■■■□□ 2.63
TPM4-201ENST00000300933 TCOF1Q13428 1488 aaKnown RBP31.49■■■□□ 2.63
TPM4-201ENST00000300933 UACAQ9BZF9 1416 aa31.49■■■□□ 2.63
TPM4-201ENST00000300933 MIA2Q96PC5 1412 aa31.45■■■□□ 2.62
TPM4-201ENST00000300933 FOXD1Q16676 465 aa31.43■■■□□ 2.62
TPM4-201ENST00000300933 PPP1R15AO75807 674 aaPredicted RBP31.43■■■□□ 2.62
TPM4-201ENST00000300933 KDM6BO15054 1643 aa31.43■■■□□ 2.62
TPM4-201ENST00000300933 CFDP1Q9UEE9 299 aaPredicted RBP31.41■■■□□ 2.62
TPM4-201ENST00000300933 TONSLQ96HA7 1378 aa31.38■■■□□ 2.61
TPM4-201ENST00000300933 TROQ12816 1431 aaPredicted RBP31.37■■■□□ 2.61
TPM4-201ENST00000300933 ABCC5O15440 1437 aa31.33■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms