RNA–Protein interactions for RNA: ENST00000299957.10

CASC4-201, Transcript of cancer susceptibility 4, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CASC4, Length 3,962 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-201ENST00000299957 RAPGEF2Q9Y4G8 1499 aa18.3■□□□□ 0.52
CASC4-201ENST00000299957 BAZ1BQ9UIG0 1483 aaKnown RBP18.3■□□□□ 0.52
CASC4-201ENST00000299957 TSHZ2Q9NRE2 1034 aa18.29■□□□□ 0.52
CASC4-201ENST00000299957 CLSPNQ9HAW4 1339 aa18.28■□□□□ 0.52
CASC4-201ENST00000299957 FOXD1Q16676 465 aa18.28■□□□□ 0.52
CASC4-201ENST00000299957 ANP32EQ9BTT0 268 aa18.26■□□□□ 0.51
CASC4-201ENST00000299957 BCL11AQ9H165 835 aa18.24■□□□□ 0.51
CASC4-201ENST00000299957 B4GALNT3Q6L9W6 998 aa18.22■□□□□ 0.51
CASC4-201ENST00000299957 RAB3GAP2Q9H2M9 1393 aa18.21■□□□□ 0.51
CASC4-201ENST00000299957 KIF27Q86VH2 1401 aa18.2■□□□□ 0.5
CASC4-201ENST00000299957 DHX57Q6P158 1386 aaKnown RBP18.19■□□□□ 0.5
CASC4-201ENST00000299957 CCDC136Q96JN2 1154 aa18.19■□□□□ 0.5
CASC4-201ENST00000299957 EIF4G2P78344 907 aaKnown RBP eCLIP18.19■□□□□ 0.5
CASC4-201ENST00000299957 RBM19Q9Y4C8 960 aaKnown RBP18.18■□□□□ 0.5
CASC4-201ENST00000299957 TMC1Q8TDI8 760 aa18.16■□□□□ 0.5
CASC4-201ENST00000299957 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.15■□□□□ 0.51e-6■■■□□ 16.9
CASC4-201ENST00000299957 SENP3Q9H4L4 574 aaPredicted RBP18.13■□□□□ 0.49
CASC4-201ENST00000299957 ANP32AP39687 249 aaKnown RBP18.12■□□□□ 0.49
CASC4-201ENST00000299957 CUX2O14529 1486 aa18.1■□□□□ 0.49
CASC4-201ENST00000299957 RGL3Q3MIN7 710 aa18.09■□□□□ 0.49
CASC4-201ENST00000299957 CARMIL1Q5VZK9 1371 aa18.08■□□□□ 0.48
CASC4-201ENST00000299957 TOP2AP11388 1531 aaKnown RBP18.08■□□□□ 0.48
CASC4-201ENST00000299957 PPP1R15AO75807 674 aaPredicted RBP18.04■□□□□ 0.48
CASC4-201ENST00000299957 HSPA5P11021 654 aaKnown RBP18.04■□□□□ 0.48
CASC4-201ENST00000299957 SETD5Q9C0A6 1442 aa18.04■□□□□ 0.48
CASC4-201ENST00000299957 ZBTB47Q9UFB7 747 aaPredicted RBP17.97■□□□□ 0.47
CASC4-201ENST00000299957 ARXQ96QS3 562 aa17.96■□□□□ 0.47
CASC4-201ENST00000299957 SMARCA2P51531 1590 aa17.95■□□□□ 0.46
CASC4-201ENST00000299957 FHOD3Q2V2M9 1422 aa17.94■□□□□ 0.46
CASC4-201ENST00000299957 SMARCA4P51532 1647 aa17.93■□□□□ 0.46
CASC4-201ENST00000299957 RTN4Q9NQC3 1192 aaKnown RBP17.93■□□□□ 0.46
CASC4-201ENST00000299957 CANXP27824 592 aaKnown RBP17.93■□□□□ 0.46
CASC4-201ENST00000299957 TDRD9Q8NDG6 1382 aaKnown RBP17.93■□□□□ 0.46
CASC4-201ENST00000299957 LAS1LQ9Y4W2 734 aaKnown RBP17.91■□□□□ 0.46
CASC4-201ENST00000299957 CHGAP10645 457 aaKnown RBP17.89■□□□□ 0.46
CASC4-201ENST00000299957 PPP4R2Q9NY27 417 aa17.89■□□□□ 0.46
CASC4-201ENST00000299957 L3MBTL2Q969R5 705 aa17.89■□□□□ 0.45
CASC4-201ENST00000299957 CCER2I3L3R5 266 aa17.88■□□□□ 0.45
CASC4-201ENST00000299957 CARD11Q9BXL7 1154 aa17.88■□□□□ 0.45
CASC4-201ENST00000299957 CFDP1Q9UEE9 299 aaPredicted RBP17.88■□□□□ 0.45
CASC4-201ENST00000299957 ATAD2BQ9ULI0 1458 aa17.88■□□□□ 0.45
CASC4-201ENST00000299957 TSPY4P0CV99 314 aa17.87■□□□□ 0.45
CASC4-201ENST00000299957 TSPY10P0CW01 314 aa17.87■□□□□ 0.45
CASC4-201ENST00000299957 EIF5BO60841 1220 aaKnown RBP17.85■□□□□ 0.45
CASC4-201ENST00000299957 CHMP7Q8WUX9 453 aaPredicted RBP17.84■□□□□ 0.45
CASC4-201ENST00000299957 CC2D1BQ5T0F9 858 aaKnown RBP17.83■□□□□ 0.45
CASC4-201ENST00000299957 KIF21BO75037 1637 aa17.83■□□□□ 0.45
CASC4-201ENST00000299957 MPHOSPH9Q99550 1183 aa17.82■□□□□ 0.44
CASC4-201ENST00000299957 PHLDB1Q86UU1 1377 aa17.81■□□□□ 0.44
CASC4-201ENST00000299957 ARAP1Q96P48 1450 aa17.8■□□□□ 0.44
CASC4-201ENST00000299957 FHAD1B1AJZ9 1412 aa17.8■□□□□ 0.44
CASC4-201ENST00000299957 DCAF11Q8TEB1 546 aa17.8■□□□□ 0.44
CASC4-201ENST00000299957 ARHGAP35Q9NRY4 1499 aa17.79■□□□□ 0.44
CASC4-201ENST00000299957 SYNJ1O43426 1573 aa17.77■□□□□ 0.44
CASC4-201ENST00000299957 EIF4G1Q04637 1599 aaKnown RBP17.76■□□□□ 0.43
CASC4-201ENST00000299957 NEUROD2Q15784 382 aa17.75■□□□□ 0.43
CASC4-201ENST00000299957 PKD2Q13563 968 aa17.74■□□□□ 0.43
CASC4-201ENST00000299957 CCDC184Q52MB2 194 aa17.74■□□□□ 0.43
CASC4-201ENST00000299957 NOP58Q9Y2X3 529 aaKnown RBP17.74■□□□□ 0.43
CASC4-201ENST00000299957 TIMELESSQ9UNS1 1208 aa17.74■□□□□ 0.43
CASC4-201ENST00000299957 DEKP35659 375 aaKnown RBP17.74■□□□□ 0.43
CASC4-201ENST00000299957 RGS3P49796 1198 aa17.74■□□□□ 0.43
CASC4-201ENST00000299957 IGF1RP08069 1367 aa17.73■□□□□ 0.43
CASC4-201ENST00000299957 WDR43Q15061 677 aaKnown RBP eCLIP17.72■□□□□ 0.43
CASC4-201ENST00000299957 TNNT2P45379 298 aaPredicted RBP17.71■□□□□ 0.43
CASC4-201ENST00000299957 PLEKHD1A6NEE1 506 aa17.7■□□□□ 0.42
CASC4-201ENST00000299957 ZNF644Q9H582 1327 aaPredicted RBP17.67■□□□□ 0.42
CASC4-201ENST00000299957 PRKRIP1Q9H875 184 aaPredicted RBP17.66■□□□□ 0.42
CASC4-201ENST00000299957 NEFMP07197 916 aa17.66■□□□□ 0.42
CASC4-201ENST00000299957 WASHC2AQ641Q2 1341 aa17.62■□□□□ 0.41
CASC4-201ENST00000299957 PLIN1O60240 522 aa17.62■□□□□ 0.41
CASC4-201ENST00000299957 SLC24A1O60721 1099 aa17.6■□□□□ 0.41
CASC4-201ENST00000299957 RAD54L2Q9Y4B4 1467 aa17.6■□□□□ 0.41
CASC4-201ENST00000299957 CADPSQ9ULU8 1353 aa17.6■□□□□ 0.41
CASC4-201ENST00000299957 ST20-MTHFSA0A0A6YYL1 179 aa17.57■□□□□ 0.4
CASC4-201ENST00000299957 FRAT1Q92837 279 aaPredicted RBP17.56■□□□□ 0.4
CASC4-201ENST00000299957 FMN1Q68DA7 1419 aa17.56■□□□□ 0.4
CASC4-201ENST00000299957 SLC4A3P48751 1232 aa17.56■□□□□ 0.4
CASC4-201ENST00000299957 KNSTRNQ9Y448 316 aa17.55■□□□□ 0.4
CASC4-201ENST00000299957 CCDC18Q5T9S5 1454 aa17.55■□□□□ 0.4
CASC4-201ENST00000299957 WDR97A6NE52 1622 aa17.55■□□□□ 0.4
CASC4-201ENST00000299957 HNRNPMP52272 730 aaKnown RBP eCLIP17.53■□□□□ 0.4
CASC4-201ENST00000299957 PLPPR3Q6T4P5 718 aa17.53■□□□□ 0.4
CASC4-201ENST00000299957 RCAN3Q9UKA8 241 aa17.53■□□□□ 0.4
CASC4-201ENST00000299957 NUP155O75694 1391 aa17.52■□□□□ 0.4
CASC4-201ENST00000299957 EXOC6Q8TAG9 804 aa17.52■□□□□ 0.4
CASC4-201ENST00000299957 RRBP1Q9P2E9 1410 aaKnown RBP17.52■□□□□ 0.39
CASC4-201ENST00000299957 NUDCQ9Y266 331 aa17.51■□□□□ 0.39
CASC4-201ENST00000299957 LRRC9Q6ZRR7 1453 aa17.51■□□□□ 0.39
CASC4-201ENST00000299957 C11orf95C9JLR9 678 aaPredicted RBP17.5■□□□□ 0.39
CASC4-201ENST00000299957 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.5■□□□□ 0.39
CASC4-201ENST00000299957 FGD5Q6ZNL6 1462 aa17.5■□□□□ 0.39
CASC4-201ENST00000299957 NBPF8Q3BBV2 869 aa17.49■□□□□ 0.39
CASC4-201ENST00000299957 SPRYD3Q8NCJ5 442 aa17.49■□□□□ 0.39
CASC4-201ENST00000299957 PRXQ9BXM0 1461 aa17.49■□□□□ 0.39
CASC4-201ENST00000299957 MSH5O43196 834 aa17.49■□□□□ 0.39
CASC4-201ENST00000299957 KIF7Q2M1P5 1343 aa17.48■□□□□ 0.39
CASC4-201ENST00000299957 CCDC146Q8IYE0 955 aa17.47■□□□□ 0.39
CASC4-201ENST00000299957 PAK3O75914 559 aaPredicted RBP17.46■□□□□ 0.39
CASC4-201ENST00000299957 HSP90AA1P07900 732 aaKnown RBP17.46■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms