RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 GAPVD1Q14C86 1478 aa35.97■■■■□ 3.35
TRIM54-201ENST00000296098 TDRD9Q8NDG6 1382 aaKnown RBP35.94■■■■□ 3.34
TRIM54-201ENST00000296098 PCF11O94913 1555 aaKnown RBP35.93■■■■□ 3.34
TRIM54-201ENST00000296098 TARBP1Q13395 1621 aaKnown RBP35.93■■■■□ 3.34
TRIM54-201ENST00000296098 CFAP43Q8NDM7 1665 aa35.92■■■■□ 3.34
TRIM54-201ENST00000296098 FHOD3Q2V2M9 1422 aa35.85■■■■□ 3.33
TRIM54-201ENST00000296098 CCNB3Q8WWL7 1395 aa35.84■■■■□ 3.33
TRIM54-201ENST00000296098 LRRC9Q6ZRR7 1453 aa35.83■■■■□ 3.33
TRIM54-201ENST00000296098 MRC2Q9UBG0 1479 aa35.81■■■■□ 3.32
TRIM54-201ENST00000296098 FYCO1Q9BQS8 1478 aa35.81■■■■□ 3.32
TRIM54-201ENST00000296098 P3H3Q8IVL6 736 aa35.78■■■■□ 3.32
TRIM54-201ENST00000296098 AQRO60306 1485 aaKnown RBP eCLIP35.78■■■■□ 3.32
TRIM54-201ENST00000296098 PBRM1Q86U86 1689 aa35.76■■■■□ 3.31
TRIM54-201ENST00000296098 CASKIN1Q8WXD9 1431 aa35.73■■■■□ 3.31
TRIM54-201ENST00000296098 SAMD9Q5K651 1589 aa35.72■■■■□ 3.31
TRIM54-201ENST00000296098 FMN1Q68DA7 1419 aa35.68■■■■□ 3.3
TRIM54-201ENST00000296098 DHX57Q6P158 1386 aaKnown RBP35.62■■■■□ 3.29
TRIM54-201ENST00000296098 CLSPNQ9HAW4 1339 aa35.61■■■■□ 3.29
TRIM54-201ENST00000296098 SNAPC4Q5SXM2 1469 aa35.61■■■■□ 3.29
TRIM54-201ENST00000296098 ADAMTS12P58397 1594 aa35.59■■■■□ 3.29
TRIM54-201ENST00000296098 PHLDB1Q86UU1 1377 aa35.59■■■■□ 3.29
TRIM54-201ENST00000296098 WDR62O43379 1518 aa35.58■■■■□ 3.29
TRIM54-201ENST00000296098 ATP1B4Q9UN42 357 aaPredicted RBP35.57■■■■□ 3.28
TRIM54-201ENST00000296098 IFT140Q96RY7 1462 aa35.51■■■■□ 3.28
TRIM54-201ENST00000296098 GRIN2BQ13224 1484 aa35.5■■■■□ 3.27
TRIM54-201ENST00000296098 DIEXFQ68CQ4 756 aaKnown RBP35.5■■■■□ 3.27
TRIM54-201ENST00000296098 ZNF316A6NFI3 1004 aaPredicted RBP35.49■■■■□ 3.27
TRIM54-201ENST00000296098 THOC2Q8NI27 1593 aaKnown RBP35.48■■■■□ 3.27
TRIM54-201ENST00000296098 ITGAEP38570 1179 aa35.45■■■■□ 3.27
TRIM54-201ENST00000296098 LRRIQ1Q96JM4 1722 aa35.44■■■■□ 3.26
TRIM54-201ENST00000296098 IQGAP2Q13576 1575 aa35.43■■■■□ 3.26
TRIM54-201ENST00000296098 ZNF608Q9ULD9 1512 aaPredicted RBP35.37■■■■□ 3.25
TRIM54-201ENST00000296098 RAB3GAP2Q9H2M9 1393 aa35.35■■■■□ 3.25
TRIM54-201ENST00000296098 FAM50AQ14320 339 aaKnown RBP35.33■■■■□ 3.25
TRIM54-201ENST00000296098 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.32■■■■□ 3.24
TRIM54-201ENST00000296098 ERCC6Q03468 1493 aa35.31■■■■□ 3.24
TRIM54-201ENST00000296098 MTUS2Q5JR59 1369 aa35.31■■■■□ 3.24
TRIM54-201ENST00000296098 SETD5Q9C0A6 1442 aa35.3■■■■□ 3.24
TRIM54-201ENST00000296098 EIF4G3O43432 1585 aaKnown RBP35.29■■■■□ 3.24
TRIM54-201ENST00000296098 EHBP1L1Q8N3D4 1523 aa35.26■■■■□ 3.24
TRIM54-201ENST00000296098 FGD6Q6ZV73 1430 aa35.25■■■■□ 3.23
TRIM54-201ENST00000296098 HECW1Q76N89 1606 aa35.25■■■■□ 3.23
TRIM54-201ENST00000296098 CCDC18Q5T9S5 1454 aa35.24■■■■□ 3.23
TRIM54-201ENST00000296098 SUPT6HQ7KZ85 1726 aaKnown RBP35.23■■■■□ 3.23
TRIM54-201ENST00000296098 UGGT2Q9NYU1 1516 aa35.22■■■■□ 3.23
TRIM54-201ENST00000296098 NCOA2Q15596 1464 aa35.18■■■■□ 3.22
TRIM54-201ENST00000296098 MAPKBP1O60336 1514 aa35.17■■■■□ 3.22
TRIM54-201ENST00000296098 KIAA0586Q9BVV6 1533 aa35.12■■■■□ 3.21
TRIM54-201ENST00000296098 GRIN2AQ12879 1464 aa35.12■■■■□ 3.21
TRIM54-201ENST00000296098 MYOM3Q5VTT5 1437 aa35.11■■■■□ 3.21
TRIM54-201ENST00000296098 MAGI3Q5TCQ9 1506 aa35.1■■■■□ 3.21
TRIM54-201ENST00000296098 ARHGEF11O15085 1522 aa35.09■■■■□ 3.21
TRIM54-201ENST00000296098 MAGI1Q96QZ7 1491 aaPredicted RBP35.07■■■■□ 3.2
TRIM54-201ENST00000296098 KIAA0556O60303 1618 aa35.07■■■■□ 3.2
TRIM54-201ENST00000296098 EPRSP07814 1512 aaKnown RBP35.06■■■■□ 3.2
TRIM54-201ENST00000296098 DISP1Q96F81 1524 aa35■■■■□ 3.19
TRIM54-201ENST00000296098 PTPN23Q9H3S7 1636 aa34.99■■■■□ 3.19
TRIM54-201ENST00000296098 CDK13Q14004 1512 aaKnown RBP34.97■■■■□ 3.19
TRIM54-201ENST00000296098 SYNJ2O15056 1496 aa34.95■■■■□ 3.18
TRIM54-201ENST00000296098 HFM1A2PYH4 1435 aa34.91■■■■□ 3.18
TRIM54-201ENST00000296098 PTPRKQ15262 1439 aa34.91■■■■□ 3.18
TRIM54-201ENST00000296098 CEP170Q5SW79 1584 aa34.9■■■■□ 3.18
TRIM54-201ENST00000296098 TCOF1Q13428 1488 aaKnown RBP34.88■■■■□ 3.17
TRIM54-201ENST00000296098 RAPGEF6Q8TEU7 1601 aa34.86■■■■□ 3.17
TRIM54-201ENST00000296098 CHMP7Q8WUX9 453 aaPredicted RBP34.82■■■■□ 3.16
TRIM54-201ENST00000296098 NUP153P49790 1475 aaKnown RBP34.79■■■■□ 3.16
TRIM54-201ENST00000296098 NAIPQ13075 1403 aa34.78■■■■□ 3.16
TRIM54-201ENST00000296098 MIA2Q96PC5 1412 aa34.78■■■■□ 3.16
TRIM54-201ENST00000296098 CENPBP07199 599 aaPredicted RBP34.77■■■■□ 3.16
TRIM54-201ENST00000296098 MIER1Q8N108 512 aa34.77■■■■□ 3.16
TRIM54-201ENST00000296098 NUP160Q12769 1436 aa34.76■■■■□ 3.15
TRIM54-201ENST00000296098 ACIN1Q9UKV3 1341 aaKnown RBP34.76■■■■□ 3.15
TRIM54-201ENST00000296098 UACAQ9BZF9 1416 aa34.74■■■■□ 3.15
TRIM54-201ENST00000296098 SCAF1Q9H7N4 1312 aaKnown RBP34.73■■■■□ 3.15
TRIM54-201ENST00000296098 GCC2Q8IWJ2 1684 aa34.73■■■■□ 3.15
TRIM54-201ENST00000296098 ARID3CA6NKF2 412 aa34.72■■■■□ 3.15
TRIM54-201ENST00000296098 SIN3AQ96ST3 1273 aa34.7■■■■□ 3.15
TRIM54-201ENST00000296098 NEUROD1Q13562 356 aa34.68■■■■□ 3.14
TRIM54-201ENST00000296098 TIMELESSQ9UNS1 1208 aa34.68■■■■□ 3.14
TRIM54-201ENST00000296098 AKNAQ7Z591 1439 aa34.67■■■■□ 3.14
TRIM54-201ENST00000296098 FBLN2P98095 1184 aa34.67■■■■□ 3.14
TRIM54-201ENST00000296098 CARMIL2Q6F5E8 1435 aa34.65■■■■□ 3.14
TRIM54-201ENST00000296098 CDK11AQ9UQ88 783 aaPredicted RBP34.59■■■■□ 3.13
TRIM54-201ENST00000296098 PLB1Q6P1J6 1458 aa34.58■■■■□ 3.13
TRIM54-201ENST00000296098 JPH4Q96JJ6 628 aa34.54■■■■□ 3.12
TRIM54-201ENST00000296098 TROQ12816 1431 aaPredicted RBP34.53■■■■□ 3.12
TRIM54-201ENST00000296098 DNMT1P26358 1616 aaKnown RBP34.52■■■■□ 3.12
TRIM54-201ENST00000296098 ADCY10Q96PN6 1610 aa34.51■■■■□ 3.12
TRIM54-201ENST00000296098 RRP7BPQ9NSQ0 103 aa34.51■■■■□ 3.12
TRIM54-201ENST00000296098 CHIC2Q9UKJ5 165 aa34.5■■■■□ 3.11
TRIM54-201ENST00000296098 ITSN2Q9NZM3 1697 aa34.49■■■■□ 3.11
TRIM54-201ENST00000296098 DAPK1P53355 1430 aa34.48■■■■□ 3.11
TRIM54-201ENST00000296098 KDM6BO15054 1643 aa34.47■■■■□ 3.11
TRIM54-201ENST00000296098 PRG4Q92954 1404 aaPredicted RBP34.47■■■■□ 3.11
TRIM54-201ENST00000296098 YTHDC1Q96MU7 727 aaKnown RBP34.46■■■■□ 3.11
TRIM54-201ENST00000296098 TONSLQ96HA7 1378 aa34.44■■■■□ 3.1
TRIM54-201ENST00000296098 ABCA8O94911 1581 aa34.44■■■■□ 3.1
TRIM54-201ENST00000296098 PPP1R15AO75807 674 aaPredicted RBP34.42■■■■□ 3.1
TRIM54-201ENST00000296098 ROCK1Q13464 1354 aa34.42■■■■□ 3.1
TRIM54-201ENST00000296098 KIF14Q15058 1648 aa34.41■■■■□ 3.1
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms