RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 FBLN2P98095 1184 aa17.12■□□□□ 0.33
CUX1-202ENST00000292538 ERCC6Q03468 1493 aa17.09■□□□□ 0.33
CUX1-202ENST00000292538 CCNB3Q8WWL7 1395 aa17.03■□□□□ 0.32
CUX1-202ENST00000292538 FHAD1B1AJZ9 1412 aa17.02■□□□□ 0.32
CUX1-202ENST00000292538 MRC2Q9UBG0 1479 aa17.02■□□□□ 0.32
CUX1-202ENST00000292538 ZNF608Q9ULD9 1512 aaPredicted RBP17■□□□□ 0.31
CUX1-202ENST00000292538 PHLDB1Q86UU1 1377 aa16.97■□□□□ 0.31
CUX1-202ENST00000292538 CHMP7Q8WUX9 453 aaPredicted RBP16.96■□□□□ 0.3
CUX1-202ENST00000292538 DIEXFQ68CQ4 756 aaKnown RBP16.95■□□□□ 0.3
CUX1-202ENST00000292538 CUL7Q14999 1698 aa16.95■□□□□ 0.3
CUX1-202ENST00000292538 LRRC9Q6ZRR7 1453 aa16.94■□□□□ 0.3
CUX1-202ENST00000292538 MTUS2Q5JR59 1369 aa16.94■□□□□ 0.3
CUX1-202ENST00000292538 ABCA5Q8WWZ7 1642 aa16.93■□□□□ 0.3
CUX1-202ENST00000292538 PCF11O94913 1555 aaKnown RBP16.93■□□□□ 0.3
CUX1-202ENST00000292538 TIAM1Q13009 1591 aa16.92■□□□□ 0.3
CUX1-202ENST00000292538 TARBP1Q13395 1621 aaKnown RBP16.92■□□□□ 0.3
CUX1-202ENST00000292538 RRBP1Q9P2E9 1410 aaKnown RBP16.91■□□□□ 0.3
CUX1-202ENST00000292538 FMN1Q68DA7 1419 aa16.91■□□□□ 0.3
CUX1-202ENST00000292538 WDR97A6NE52 1622 aa16.89■□□□□ 0.29
CUX1-202ENST00000292538 GRIN2BQ13224 1484 aa16.88■□□□□ 0.29
CUX1-202ENST00000292538 ZNF316A6NFI3 1004 aaPredicted RBP16.88■□□□□ 0.29
CUX1-202ENST00000292538 CASKIN1Q8WXD9 1431 aa16.88■□□□□ 0.29
CUX1-202ENST00000292538 DHX57Q6P158 1386 aaKnown RBP16.87■□□□□ 0.29
CUX1-202ENST00000292538 IFT140Q96RY7 1462 aa16.86■□□□□ 0.29
CUX1-202ENST00000292538 NEUROD1Q13562 356 aa16.86■□□□□ 0.29
CUX1-202ENST00000292538 EFCAB5A4FU69 1503 aa16.84■□□□□ 0.29
CUX1-202ENST00000292538 RAB3GAP2Q9H2M9 1393 aa16.84■□□□□ 0.29
CUX1-202ENST00000292538 SNAPC4Q5SXM2 1469 aa16.83■□□□□ 0.28
CUX1-202ENST00000292538 FYCO1Q9BQS8 1478 aa16.83■□□□□ 0.28
CUX1-202ENST00000292538 CHIC2Q9UKJ5 165 aa16.83■□□□□ 0.28
CUX1-202ENST00000292538 CTTNBP2Q8WZ74 1663 aa16.82■□□□□ 0.28
CUX1-202ENST00000292538 WDR62O43379 1518 aa16.78■□□□□ 0.28
CUX1-202ENST00000292538 MAP3K1Q13233 1512 aa16.77■□□□□ 0.28
CUX1-202ENST00000292538 SIN3AQ96ST3 1273 aa16.77■□□□□ 0.27
CUX1-202ENST00000292538 PBRM1Q86U86 1689 aa16.76■□□□□ 0.27
CUX1-202ENST00000292538 SETD5Q9C0A6 1442 aa16.75■□□□□ 0.27
CUX1-202ENST00000292538 RRP7BPQ9NSQ0 103 aa16.75■□□□□ 0.27
CUX1-202ENST00000292538 ADAMTS12P58397 1594 aa16.74■□□□□ 0.27
CUX1-202ENST00000292538 IQGAP2Q13576 1575 aa16.73■□□□□ 0.27
CUX1-202ENST00000292538 YTHDC1Q96MU7 727 aaKnown RBP16.73■□□□□ 0.27
CUX1-202ENST00000292538 JPH4Q96JJ6 628 aa16.72■□□□□ 0.27
CUX1-202ENST00000292538 FGD6Q6ZV73 1430 aa16.7■□□□□ 0.26
CUX1-202ENST00000292538 EIF4G3O43432 1585 aaKnown RBP16.7■□□□□ 0.26
CUX1-202ENST00000292538 SAMD9Q5K651 1589 aa16.7■□□□□ 0.26
CUX1-202ENST00000292538 NCOA2Q15596 1464 aa16.7■□□□□ 0.26
CUX1-202ENST00000292538 GRIN2AQ12879 1464 aa16.69■□□□□ 0.26
CUX1-202ENST00000292538 CDK13Q14004 1512 aaKnown RBP16.69■□□□□ 0.26
CUX1-202ENST00000292538 ZNF777Q9ULD5 760 aaPredicted RBP16.69■□□□□ 0.26
CUX1-202ENST00000292538 CFAP43Q8NDM7 1665 aa16.67■□□□□ 0.26
CUX1-202ENST00000292538 TRIM52Q96A61 297 aa16.67■□□□□ 0.26
CUX1-202ENST00000292538 CLSPNQ9HAW4 1339 aa16.67■□□□□ 0.26
CUX1-202ENST00000292538 KIAA0586Q9BVV6 1533 aa16.67■□□□□ 0.26
CUX1-202ENST00000292538 MIER1Q8N108 512 aa16.65■□□□□ 0.26
CUX1-202ENST00000292538 MYOM3Q5VTT5 1437 aa16.63■□□□□ 0.25
CUX1-202ENST00000292538 CDK11AQ9UQ88 783 aaPredicted RBP16.63■□□□□ 0.25
CUX1-202ENST00000292538 EPRSP07814 1512 aaKnown RBP16.63■□□□□ 0.25
CUX1-202ENST00000292538 ZNF644Q9H582 1327 aaPredicted RBP16.63■□□□□ 0.25
CUX1-202ENST00000292538 THOC2Q8NI27 1593 aaKnown RBP16.63■□□□□ 0.25
CUX1-202ENST00000292538 PTPRKQ15262 1439 aa16.63■□□□□ 0.25
CUX1-202ENST00000292538 HIRIP3Q9BW71 556 aaPredicted RBP16.62■□□□□ 0.25
CUX1-202ENST00000292538 MAGI3Q5TCQ9 1506 aa16.61■□□□□ 0.25
CUX1-202ENST00000292538 SYNJ2O15056 1496 aa16.61■□□□□ 0.25
CUX1-202ENST00000292538 DISP1Q96F81 1524 aa16.6■□□□□ 0.25
CUX1-202ENST00000292538 MAGI1Q96QZ7 1491 aaPredicted RBP16.59■□□□□ 0.25
CUX1-202ENST00000292538 PLB1Q6P1J6 1458 aa16.58■□□□□ 0.25
CUX1-202ENST00000292538 CCDC18Q5T9S5 1454 aa16.58■□□□□ 0.24
CUX1-202ENST00000292538 UGGT2Q9NYU1 1516 aa16.57■□□□□ 0.24
CUX1-202ENST00000292538 LRRIQ1Q96JM4 1722 aa16.57■□□□□ 0.24
CUX1-202ENST00000292538 EHBP1L1Q8N3D4 1523 aa16.55■□□□□ 0.24
CUX1-202ENST00000292538 FOXD1Q16676 465 aa16.55■□□□□ 0.24
CUX1-202ENST00000292538 CFDP1Q9UEE9 299 aaPredicted RBP16.55■□□□□ 0.24
CUX1-202ENST00000292538 HECW1Q76N89 1606 aa16.55■□□□□ 0.24
CUX1-202ENST00000292538 CARMIL2Q6F5E8 1435 aa16.55■□□□□ 0.24
CUX1-202ENST00000292538 PRG4Q92954 1404 aaPredicted RBP16.54■□□□□ 0.24
CUX1-202ENST00000292538 CEP170Q5SW79 1584 aa16.54■□□□□ 0.24
CUX1-202ENST00000292538 PLEKHD1A6NEE1 506 aa16.53■□□□□ 0.24
CUX1-202ENST00000292538 MAPKBP1O60336 1514 aa16.53■□□□□ 0.24
CUX1-202ENST00000292538 KIAA0556O60303 1618 aa16.53■□□□□ 0.24
CUX1-202ENST00000292538 SUPT6HQ7KZ85 1726 aaKnown RBP16.52■□□□□ 0.24
CUX1-202ENST00000292538 NUP153P49790 1475 aaKnown RBP16.52■□□□□ 0.23
CUX1-202ENST00000292538 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.51■□□□□ 0.232e-6■■□□□ 13.4
CUX1-202ENST00000292538 NAIPQ13075 1403 aa16.48■□□□□ 0.23
CUX1-202ENST00000292538 PTPN23Q9H3S7 1636 aa16.47■□□□□ 0.23
CUX1-202ENST00000292538 CENPBP07199 599 aaPredicted RBP16.47■□□□□ 0.23
CUX1-202ENST00000292538 TONSLQ96HA7 1378 aa16.47■□□□□ 0.23
CUX1-202ENST00000292538 HFM1A2PYH4 1435 aa16.47■□□□□ 0.23
CUX1-202ENST00000292538 SCAF1Q9H7N4 1312 aaKnown RBP16.46■□□□□ 0.22
CUX1-202ENST00000292538 NUP160Q12769 1436 aa16.45■□□□□ 0.22
CUX1-202ENST00000292538 KCNH8Q96L42 1107 aa16.45■□□□□ 0.22
CUX1-202ENST00000292538 PTPRGP23470 1445 aa16.44■□□□□ 0.22
CUX1-202ENST00000292538 ACIN1Q9UKV3 1341 aaKnown RBP16.44■□□□□ 0.22
CUX1-202ENST00000292538 DDX10Q13206 875 aaKnown RBP16.43■□□□□ 0.22
CUX1-202ENST00000292538 RAPGEF6Q8TEU7 1601 aa16.42■□□□□ 0.22
CUX1-202ENST00000292538 PPP1R15AO75807 674 aaPredicted RBP16.42■□□□□ 0.22
CUX1-202ENST00000292538 MPHOSPH9Q99550 1183 aa16.42■□□□□ 0.22
CUX1-202ENST00000292538 UACAQ9BZF9 1416 aa16.4■□□□□ 0.22
CUX1-202ENST00000292538 SLC4A1APQ9BWU0 796 aaKnown RBP16.4■□□□□ 0.22
CUX1-202ENST00000292538 TROQ12816 1431 aaPredicted RBP16.39■□□□□ 0.21
CUX1-202ENST00000292538 ARHGEF11O15085 1522 aa16.39■□□□□ 0.21
CUX1-202ENST00000292538 MIA2Q96PC5 1412 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms