RNA–Protein interactions for RNA: ENST00000290650.8

UBR1-201, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBR1, Length 7,761 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-201ENST00000290650 CHMP7Q8WUX9 453 aaPredicted RBP6.61□□□□□ -1.35
UBR1-201ENST00000290650 CDK11AQ9UQ88 783 aaPredicted RBP6.6□□□□□ -1.35
UBR1-201ENST00000290650 RGL3Q3MIN7 710 aa6.6□□□□□ -1.35
UBR1-201ENST00000290650 CUX2O14529 1486 aa6.6□□□□□ -1.35
UBR1-201ENST00000290650 KIF27Q86VH2 1401 aa6.6□□□□□ -1.35
UBR1-201ENST00000290650 EIF4G1Q04637 1599 aaKnown RBP6.59□□□□□ -1.35
UBR1-201ENST00000290650 SLC24A1O60721 1099 aa6.59□□□□□ -1.35
UBR1-201ENST00000290650 RAPGEF2Q9Y4G8 1499 aa6.58□□□□□ -1.36
UBR1-201ENST00000290650 SMARCA4P51532 1647 aa6.57□□□□□ -1.36
UBR1-201ENST00000290650 MRS2Q9HD23 443 aa6.57□□□□□ -1.36
UBR1-201ENST00000290650 TOP2AP11388 1531 aaKnown RBP6.57□□□□□ -1.36
UBR1-201ENST00000290650 EEA1Q15075 1411 aa6.56□□□□□ -1.36
UBR1-201ENST00000290650 PLEKHG5O94827 1062 aa6.55□□□□□ -1.36
UBR1-201ENST00000290650 CANXP27824 592 aaKnown RBP6.55□□□□□ -1.36
UBR1-201ENST00000290650 CARMIL1Q5VZK9 1371 aa6.54□□□□□ -1.36
UBR1-201ENST00000290650 TDRD9Q8NDG6 1382 aaKnown RBP6.54□□□□□ -1.36
UBR1-201ENST00000290650 CCNB3Q8WWL7 1395 aa6.54□□□□□ -1.36
UBR1-201ENST00000290650 TMC1Q8TDI8 760 aa6.54□□□□□ -1.36
UBR1-201ENST00000290650 SUPT16HQ9Y5B9 1047 aaKnown RBP6.54□□□□□ -1.36
UBR1-201ENST00000290650 NBR1Q14596 966 aa6.53□□□□□ -1.36
UBR1-201ENST00000290650 RTL5Q5HYW3 569 aaPredicted RBP6.53□□□□□ -1.36
UBR1-201ENST00000290650 VPS8Q8N3P4 1428 aa6.52□□□□□ -1.37
UBR1-201ENST00000290650 TSPY4P0CV99 314 aa6.52□□□□□ -1.37
UBR1-201ENST00000290650 TSPY10P0CW01 314 aa6.52□□□□□ -1.37
UBR1-201ENST00000290650 EIF4G2P78344 907 aaKnown RBP eCLIP6.51□□□□□ -1.37
UBR1-201ENST00000290650 SMARCA2P51531 1590 aa6.51□□□□□ -1.37
UBR1-201ENST00000290650 CFDP1Q9UEE9 299 aaPredicted RBP6.51□□□□□ -1.37
UBR1-201ENST00000290650 FHOD3Q2V2M9 1422 aa6.5□□□□□ -1.37
UBR1-201ENST00000290650 RAB3GAP2Q9H2M9 1393 aa6.5□□□□□ -1.37
UBR1-201ENST00000290650 ERCC6Q03468 1493 aa6.5□□□□□ -1.37
UBR1-201ENST00000290650 ATAD2BQ9ULI0 1458 aa6.49□□□□□ -1.37
UBR1-201ENST00000290650 STAG3Q9UJ98 1225 aa6.48□□□□□ -1.37
UBR1-201ENST00000290650 CCDC136Q96JN2 1154 aa6.48□□□□□ -1.37
UBR1-201ENST00000290650 TNNT2P45379 298 aaPredicted RBP6.48□□□□□ -1.37
UBR1-201ENST00000290650 ARXQ96QS3 562 aa6.48□□□□□ -1.37
UBR1-201ENST00000290650 PLEKHD1A6NEE1 506 aa6.47□□□□□ -1.37
UBR1-201ENST00000290650 CC2D1BQ5T0F9 858 aaKnown RBP6.47□□□□□ -1.37
UBR1-201ENST00000290650 CARD11Q9BXL7 1154 aa6.46□□□□□ -1.38
UBR1-201ENST00000290650 B4GALNT3Q6L9W6 998 aa6.46□□□□□ -1.38
UBR1-201ENST00000290650 SETD5Q9C0A6 1442 aa6.45□□□□□ -1.38
UBR1-201ENST00000290650 ANP32AP39687 249 aaKnown RBP6.45□□□□□ -1.38
UBR1-201ENST00000290650 NEUROD2Q15784 382 aa6.45□□□□□ -1.38
UBR1-201ENST00000290650 DCAF11Q8TEB1 546 aa6.45□□□□□ -1.38
UBR1-201ENST00000290650 HSPA5P11021 654 aaKnown RBP6.44□□□□□ -1.38
UBR1-201ENST00000290650 ARHGAP35Q9NRY4 1499 aa6.44□□□□□ -1.38
UBR1-201ENST00000290650 SYNJ1O43426 1573 aa6.44□□□□□ -1.38
UBR1-201ENST00000290650 NPM1P06748 294 aaKnown RBP eCLIP6.44□□□□□ -1.38
UBR1-201ENST00000290650 RAD54L2Q9Y4B4 1467 aa6.44□□□□□ -1.38
UBR1-201ENST00000290650 WDR43Q15061 677 aaKnown RBP eCLIP6.43□□□□□ -1.38
UBR1-201ENST00000290650 TSHZ2Q9NRE2 1034 aa6.43□□□□□ -1.38
UBR1-201ENST00000290650 ANP32EQ9BTT0 268 aa6.43□□□□□ -1.38
UBR1-201ENST00000290650 SAFB2Q14151 953 aaKnown RBP eCLIP6.42□□□□□ -1.38
UBR1-201ENST00000290650 FHAD1B1AJZ9 1412 aa6.42□□□□□ -1.38
UBR1-201ENST00000290650 PPM1GO15355 546 aaPredicted RBP6.42□□□□□ -1.38
UBR1-201ENST00000290650 DHX57Q6P158 1386 aaKnown RBP6.41□□□□□ -1.38
UBR1-201ENST00000290650 ZBTB7CA1YPR0 619 aa6.41□□□□□ -1.38
UBR1-201ENST00000290650 HNRNPMP52272 730 aaKnown RBP eCLIP6.41□□□□□ -1.38
UBR1-201ENST00000290650 PKD2Q13563 968 aa6.41□□□□□ -1.38
UBR1-201ENST00000290650 ESF1Q9H501 851 aaKnown RBP6.41□□□□□ -1.38
UBR1-201ENST00000290650 UNC13AQ9UPW8 1703 aa6.4□□□□□ -1.38
UBR1-201ENST00000290650 MPHOSPH9Q99550 1183 aa6.4□□□□□ -1.38
UBR1-201ENST00000290650 NUTM2DQ5VT03 806 aaPredicted RBP6.4□□□□□ -1.39
UBR1-201ENST00000290650 CADPSQ9ULU8 1353 aa6.4□□□□□ -1.39
UBR1-201ENST00000290650 PRDM2Q13029 1718 aa6.39□□□□□ -1.39
UBR1-201ENST00000290650 FANCD2Q9BXW9 1451 aa6.39□□□□□ -1.39
UBR1-201ENST00000290650 NESP48681 1621 aa6.39□□□□□ -1.39
UBR1-201ENST00000290650 FGD5Q6ZNL6 1462 aa6.38□□□□□ -1.39
UBR1-201ENST00000290650 NEFMP07197 916 aa6.38□□□□□ -1.39
UBR1-201ENST00000290650 L3MBTL2Q969R5 705 aa6.38□□□□□ -1.39
UBR1-201ENST00000290650 MLECQ14165 292 aa6.38□□□□□ -1.39
UBR1-201ENST00000290650 ZBTB47Q9UFB7 747 aaPredicted RBP6.38□□□□□ -1.39
UBR1-201ENST00000290650 KIF21BO75037 1637 aa6.38□□□□□ -1.39
UBR1-201ENST00000290650 ZNF644Q9H582 1327 aaPredicted RBP6.38□□□□□ -1.39
UBR1-201ENST00000290650 DNAJC5BQ9UF47 199 aa6.37□□□□□ -1.39
UBR1-201ENST00000290650 SOX12O15370 315 aa6.36□□□□□ -1.39
UBR1-201ENST00000290650 PPP1R15AO75807 674 aaPredicted RBP6.36□□□□□ -1.39
UBR1-201ENST00000290650 LAS1LQ9Y4W2 734 aaKnown RBP6.36□□□□□ -1.39
UBR1-201ENST00000290650 C14orf37Q86TY3 774 aa6.36□□□□□ -1.39
UBR1-201ENST00000290650 KNSTRNQ9Y448 316 aa6.36□□□□□ -1.39
UBR1-201ENST00000290650 ARAP1Q96P48 1450 aa6.35□□□□□ -1.39
UBR1-201ENST00000290650 RGS3P49796 1198 aa6.35□□□□□ -1.39
UBR1-201ENST00000290650 IGF1RP08069 1367 aa6.35□□□□□ -1.39
UBR1-201ENST00000290650 STK26Q9P289 416 aa6.35□□□□□ -1.39
UBR1-201ENST00000290650 PHLDB1Q86UU1 1377 aa6.35□□□□□ -1.39
UBR1-201ENST00000290650 GGT6Q6P531 493 aa6.35□□□□□ -1.39
UBR1-201ENST00000290650 FRAT1Q92837 279 aaPredicted RBP6.35□□□□□ -1.39
UBR1-201ENST00000290650 PDS5BQ9NTI5 1447 aa6.34□□□□□ -1.39
UBR1-201ENST00000290650 NUP155O75694 1391 aa6.34□□□□□ -1.39
UBR1-201ENST00000290650 ARID4BQ4LE39 1312 aaPredicted RBP6.34□□□□□ -1.39
UBR1-201ENST00000290650 AQRO60306 1485 aaKnown RBP eCLIP6.33□□□□□ -1.41e-6■■■■■ 30.5
UBR1-201ENST00000290650 RBM19Q9Y4C8 960 aaKnown RBP6.33□□□□□ -1.4
UBR1-201ENST00000290650 TPRNQ4KMQ1 711 aa6.33□□□□□ -1.4
UBR1-201ENST00000290650 FMN1Q68DA7 1419 aa6.33□□□□□ -1.4
UBR1-201ENST00000290650 HSP90AA1P07900 732 aaKnown RBP6.32□□□□□ -1.4
UBR1-201ENST00000290650 RTN4Q9NQC3 1192 aaKnown RBP6.32□□□□□ -1.4
UBR1-201ENST00000290650 CCDC146Q8IYE0 955 aa6.32□□□□□ -1.4
UBR1-201ENST00000290650 U2SURPO15042 1029 aaKnown RBP6.32□□□□□ -1.4
UBR1-201ENST00000290650 ROCK2O75116 1388 aaKnown RBP6.32□□□□□ -1.4
UBR1-201ENST00000290650 CUX1P39880 1505 aa6.32□□□□□ -1.4
UBR1-201ENST00000290650 CCDC18Q5T9S5 1454 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms