RNA–Protein interactions for RNA: ENST00000284767.9

PDLIM3-201, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 2,589 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-201ENST00000284767 AQRO60306 1485 aaKnown RBP eCLIP27.64■■■□□ 2.02
PDLIM3-201ENST00000284767 ERCC6Q03468 1493 aa27.61■■■□□ 2.01
PDLIM3-201ENST00000284767 WDR62O43379 1518 aa27.57■■■□□ 2
PDLIM3-201ENST00000284767 ACIN1Q9UKV3 1341 aaKnown RBP27.55■■■□□ 2
PDLIM3-201ENST00000284767 ZNF608Q9ULD9 1512 aaPredicted RBP27.55■■■□□ 2
PDLIM3-201ENST00000284767 HNRNPUL2Q1KMD3 747 aaKnown RBP27.54■■■□□ 2
PDLIM3-201ENST00000284767 CTTNBP2Q8WZ74 1663 aa27.53■■■□□ 2
PDLIM3-201ENST00000284767 FHOD3Q2V2M9 1422 aa27.53■■■□□ 2
PDLIM3-201ENST00000284767 PBRM1Q86U86 1689 aa27.5■■□□□ 1.99
PDLIM3-201ENST00000284767 IFT140Q96RY7 1462 aa27.46■■□□□ 1.99
PDLIM3-201ENST00000284767 DIEXFQ68CQ4 756 aaKnown RBP27.44■■□□□ 1.98
PDLIM3-201ENST00000284767 ATP1B4Q9UN42 357 aaPredicted RBP27.44■■□□□ 1.98
PDLIM3-201ENST00000284767 THOC2Q8NI27 1593 aaKnown RBP27.43■■□□□ 1.98
PDLIM3-201ENST00000284767 GRIN2BQ13224 1484 aa27.4■■□□□ 1.98
PDLIM3-201ENST00000284767 PCF11O94913 1555 aaKnown RBP27.4■■□□□ 1.98
PDLIM3-201ENST00000284767 NEUROD1Q13562 356 aa27.4■■□□□ 1.98
PDLIM3-201ENST00000284767 FHAD1B1AJZ9 1412 aa27.39■■□□□ 1.97
PDLIM3-201ENST00000284767 ADAMTS12P58397 1594 aa27.38■■□□□ 1.97
PDLIM3-201ENST00000284767 EFCAB5A4FU69 1503 aa27.38■■□□□ 1.97
PDLIM3-201ENST00000284767 CENPBP07199 599 aaPredicted RBP27.37■■□□□ 1.97
PDLIM3-201ENST00000284767 TIAM1Q13009 1591 aa27.36■■□□□ 1.97
PDLIM3-201ENST00000284767 EIF4G3O43432 1585 aaKnown RBP27.32■■□□□ 1.96
PDLIM3-201ENST00000284767 SNAPC4Q5SXM2 1469 aa27.28■■□□□ 1.96
PDLIM3-201ENST00000284767 SAMD9Q5K651 1589 aa27.28■■□□□ 1.96
PDLIM3-201ENST00000284767 LRRC9Q6ZRR7 1453 aa27.26■■□□□ 1.95
PDLIM3-201ENST00000284767 MAP3K1Q13233 1512 aa27.24■■□□□ 1.95
PDLIM3-201ENST00000284767 CASKIN1Q8WXD9 1431 aa27.24■■□□□ 1.95
PDLIM3-201ENST00000284767 FYCO1Q9BQS8 1478 aa27.22■■□□□ 1.95
PDLIM3-201ENST00000284767 FMN1Q68DA7 1419 aa27.22■■□□□ 1.95
PDLIM3-201ENST00000284767 RRBP1Q9P2E9 1410 aaKnown RBP27.22■■□□□ 1.95
PDLIM3-201ENST00000284767 CFAP43Q8NDM7 1665 aa27.2■■□□□ 1.94
PDLIM3-201ENST00000284767 IQGAP2Q13576 1575 aa27.19■■□□□ 1.94
PDLIM3-201ENST00000284767 GTF3C3Q9Y5Q9 886 aa27.18■■□□□ 1.94
PDLIM3-201ENST00000284767 CCNB3Q8WWL7 1395 aa27.17■■□□□ 1.94
PDLIM3-201ENST00000284767 ITGAEP38570 1179 aa27.16■■□□□ 1.94
PDLIM3-201ENST00000284767 ZNF316A6NFI3 1004 aaPredicted RBP27.15■■□□□ 1.94
PDLIM3-201ENST00000284767 PHLDB1Q86UU1 1377 aa27.15■■□□□ 1.94
PDLIM3-201ENST00000284767 FBLN2P98095 1184 aa27.13■■□□□ 1.93
PDLIM3-201ENST00000284767 GRIN2AQ12879 1464 aa27.12■■□□□ 1.93
PDLIM3-201ENST00000284767 LRRIQ1Q96JM4 1722 aa27.1■■□□□ 1.93
PDLIM3-201ENST00000284767 CHMP7Q8WUX9 453 aaPredicted RBP27.09■■□□□ 1.93
PDLIM3-201ENST00000284767 MAGI1Q96QZ7 1491 aaPredicted RBP27.05■■□□□ 1.92
PDLIM3-201ENST00000284767 KIAA0586Q9BVV6 1533 aa27.04■■□□□ 1.92
PDLIM3-201ENST00000284767 ARID3CA6NKF2 412 aa27.02■■□□□ 1.92
PDLIM3-201ENST00000284767 SYNJ2O15056 1496 aa27.01■■□□□ 1.91
PDLIM3-201ENST00000284767 FAM50AQ14320 339 aaKnown RBP27.01■■□□□ 1.91
PDLIM3-201ENST00000284767 UGGT2Q9NYU1 1516 aa27■■□□□ 1.91
PDLIM3-201ENST00000284767 MTUS2Q5JR59 1369 aa26.99■■□□□ 1.91
PDLIM3-201ENST00000284767 CEP170Q5SW79 1584 aa26.98■■□□□ 1.91
PDLIM3-201ENST00000284767 DISP1Q96F81 1524 aa26.96■■□□□ 1.91
PDLIM3-201ENST00000284767 KIAA0556O60303 1618 aa26.92■■□□□ 1.9
PDLIM3-201ENST00000284767 MAGI3Q5TCQ9 1506 aa26.9■■□□□ 1.9
PDLIM3-201ENST00000284767 CDK13Q14004 1512 aaKnown RBP26.88■■□□□ 1.89
PDLIM3-201ENST00000284767 DHX57Q6P158 1386 aaKnown RBP26.87■■□□□ 1.89
PDLIM3-201ENST00000284767 HECW1Q76N89 1606 aa26.86■■□□□ 1.89
PDLIM3-201ENST00000284767 EPRSP07814 1512 aaKnown RBP26.85■■□□□ 1.89
PDLIM3-201ENST00000284767 NCOA2Q15596 1464 aa26.85■■□□□ 1.89
PDLIM3-201ENST00000284767 MYT1Q01538 1121 aa26.85■■□□□ 1.89
PDLIM3-201ENST00000284767 NUP160Q12769 1436 aa26.84■■□□□ 1.89
PDLIM3-201ENST00000284767 FGD6Q6ZV73 1430 aa26.82■■□□□ 1.88
PDLIM3-201ENST00000284767 CCDC18Q5T9S5 1454 aa26.82■■□□□ 1.88
PDLIM3-201ENST00000284767 JPH4Q96JJ6 628 aa26.82■■□□□ 1.88
PDLIM3-201ENST00000284767 EHBP1L1Q8N3D4 1523 aa26.8■■□□□ 1.88
PDLIM3-201ENST00000284767 RAB3GAP2Q9H2M9 1393 aa26.8■■□□□ 1.88
PDLIM3-201ENST00000284767 SUPT6HQ7KZ85 1726 aaKnown RBP26.77■■□□□ 1.88
PDLIM3-201ENST00000284767 MIER1Q8N108 512 aa26.74■■□□□ 1.87
PDLIM3-201ENST00000284767 NUP153P49790 1475 aaKnown RBP26.74■■□□□ 1.87
PDLIM3-201ENST00000284767 MYOM3Q5VTT5 1437 aa26.74■■□□□ 1.87
PDLIM3-201ENST00000284767 PLB1Q6P1J6 1458 aa26.72■■□□□ 1.87
PDLIM3-201ENST00000284767 SETD5Q9C0A6 1442 aa26.71■■□□□ 1.87
PDLIM3-201ENST00000284767 RAPGEF6Q8TEU7 1601 aa26.71■■□□□ 1.87
PDLIM3-201ENST00000284767 YTHDC1Q96MU7 727 aaKnown RBP26.7■■□□□ 1.87
PDLIM3-201ENST00000284767 ARHGEF11O15085 1522 aa26.69■■□□□ 1.86
PDLIM3-201ENST00000284767 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.68■■□□□ 1.86
PDLIM3-201ENST00000284767 PTPRKQ15262 1439 aa26.67■■□□□ 1.86
PDLIM3-201ENST00000284767 CARMIL2Q6F5E8 1435 aa26.67■■□□□ 1.86
PDLIM3-201ENST00000284767 CHD1O14646 1710 aa26.65■■□□□ 1.86
PDLIM3-201ENST00000284767 CLSPNQ9HAW4 1339 aa26.65■■□□□ 1.86
PDLIM3-201ENST00000284767 PTPN23Q9H3S7 1636 aa26.61■■□□□ 1.85
PDLIM3-201ENST00000284767 PRG4Q92954 1404 aaPredicted RBP26.58■■□□□ 1.85
PDLIM3-201ENST00000284767 MAPKBP1O60336 1514 aa26.55■■□□□ 1.84
PDLIM3-201ENST00000284767 CHIC2Q9UKJ5 165 aa26.53■■□□□ 1.84
PDLIM3-201ENST00000284767 CDK11AQ9UQ88 783 aaPredicted RBP26.51■■□□□ 1.83
PDLIM3-201ENST00000284767 TCOF1Q13428 1488 aaKnown RBP26.49■■□□□ 1.83
PDLIM3-201ENST00000284767 ZNF644Q9H582 1327 aaPredicted RBP26.47■■□□□ 1.83
PDLIM3-201ENST00000284767 ABCA8O94911 1581 aa26.47■■□□□ 1.83
PDLIM3-201ENST00000284767 RRP7BPQ9NSQ0 103 aa26.47■■□□□ 1.83
PDLIM3-201ENST00000284767 HFM1A2PYH4 1435 aa26.46■■□□□ 1.83
PDLIM3-201ENST00000284767 TROQ12816 1431 aaPredicted RBP26.45■■□□□ 1.83
PDLIM3-201ENST00000284767 PTPRGP23470 1445 aa26.44■■□□□ 1.82
PDLIM3-201ENST00000284767 NAIPQ13075 1403 aa26.44■■□□□ 1.82
PDLIM3-201ENST00000284767 MIA2Q96PC5 1412 aa26.44■■□□□ 1.82
PDLIM3-201ENST00000284767 SIN3AQ96ST3 1273 aa26.43■■□□□ 1.82
PDLIM3-201ENST00000284767 KIF14Q15058 1648 aa26.43■■□□□ 1.82
PDLIM3-201ENST00000284767 ERCC6L2Q5T890 1561 aa26.42■■□□□ 1.82
PDLIM3-201ENST00000284767 ATP10BO94823 1461 aa26.41■■□□□ 1.82
PDLIM3-201ENST00000284767 SHROOM2Q13796 1616 aa26.36■■□□□ 1.81
PDLIM3-201ENST00000284767 PLEKHD1A6NEE1 506 aa26.35■■□□□ 1.81
PDLIM3-201ENST00000284767 ZNF777Q9ULD5 760 aaPredicted RBP26.34■■□□□ 1.81
PDLIM3-201ENST00000284767 CFDP1Q9UEE9 299 aaPredicted RBP26.33■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms