RNA–Protein interactions for RNA: ENST00000268717.9

COPS3-201, Transcript of COP9 signalosome subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPS3, Length 1,641 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-201ENST00000268717 NUP160Q12769 1436 aa24.63■■□□□ 1.53
COPS3-201ENST00000268717 CEP170Q5SW79 1584 aa24.63■■□□□ 1.53
COPS3-201ENST00000268717 IGF1RP08069 1367 aa24.61■■□□□ 1.53
COPS3-201ENST00000268717 CUL7Q14999 1698 aa24.59■■□□□ 1.53
COPS3-201ENST00000268717 PRXQ9BXM0 1461 aa24.58■■□□□ 1.53
COPS3-201ENST00000268717 ARAP1Q96P48 1450 aa24.57■■□□□ 1.52
COPS3-201ENST00000268717 CYB5RLQ6IPT4 315 aa24.51■■□□□ 1.51
COPS3-201ENST00000268717 SHROOM2Q13796 1616 aa24.49■■□□□ 1.51
COPS3-201ENST00000268717 RAPGEF2Q9Y4G8 1499 aa24.48■■□□□ 1.51
COPS3-201ENST00000268717 CARMIL1Q5VZK9 1371 aa24.46■■□□□ 1.51
COPS3-201ENST00000268717 CEP162Q5TB80 1403 aa24.45■■□□□ 1.5
COPS3-201ENST00000268717 UBTFP17480 764 aaKnown RBP24.44■■□□□ 1.5
COPS3-201ENST00000268717 ERCC6L2Q5T890 1561 aa24.42■■□□□ 1.5
COPS3-201ENST00000268717 KIAA0586Q9BVV6 1533 aa24.36■■□□□ 1.49
COPS3-201ENST00000268717 JPH4Q96JJ6 628 aa24.35■■□□□ 1.49
COPS3-201ENST00000268717 PRG4Q92954 1404 aaPredicted RBP24.33■■□□□ 1.49
COPS3-201ENST00000268717 CLIP1P30622 1438 aa24.25■■□□□ 1.47
COPS3-201ENST00000268717 IQGAP2Q13576 1575 aa24.23■■□□□ 1.47
COPS3-201ENST00000268717 CTTNBP2Q8WZ74 1663 aa24.14■■□□□ 1.46
COPS3-201ENST00000268717 CARMIL2Q6F5E8 1435 aa24.09■■□□□ 1.45
COPS3-201ENST00000268717 VPS8Q8N3P4 1428 aa24.09■■□□□ 1.45
COPS3-201ENST00000268717 UGGT2Q9NYU1 1516 aa24.08■■□□□ 1.45
COPS3-201ENST00000268717 DISP1Q96F81 1524 aa24.06■■□□□ 1.44
COPS3-201ENST00000268717 TRHP20396 242 aaPredicted RBP24.04■■□□□ 1.44
COPS3-201ENST00000268717 TRIM26Q12899 539 aaPredicted RBP24.03■■□□□ 1.44
COPS3-201ENST00000268717 PTPRGP23470 1445 aa24.02■■□□□ 1.44
COPS3-201ENST00000268717 ADCY10Q96PN6 1610 aa24.02■■□□□ 1.44
COPS3-201ENST00000268717 KIAA0556O60303 1618 aa24■■□□□ 1.43
COPS3-201ENST00000268717 ARHGAP35Q9NRY4 1499 aa23.99■■□□□ 1.43
COPS3-201ENST00000268717 RANGAP1P46060 587 aaPredicted RBP23.99■■□□□ 1.43
COPS3-201ENST00000268717 TTBK1Q5TCY1 1321 aaPredicted RBP23.93■■□□□ 1.42
COPS3-201ENST00000268717 EFCAB5A4FU69 1503 aa23.93■■□□□ 1.42
COPS3-201ENST00000268717 PCGF6Q9BYE7 350 aa23.92■■□□□ 1.42
COPS3-201ENST00000268717 NPM1P06748 294 aaKnown RBP eCLIP23.89■■□□□ 1.42
COPS3-201ENST00000268717 MAPKBP1O60336 1514 aa23.88■■□□□ 1.41
COPS3-201ENST00000268717 UACAQ9BZF9 1416 aa23.86■■□□□ 1.41
COPS3-201ENST00000268717 UHRF1BP1LA0JNW5 1464 aa23.86■■□□□ 1.41
COPS3-201ENST00000268717 KIF13AQ9H1H9 1805 aa23.84■■□□□ 1.41
COPS3-201ENST00000268717 ABCC2Q92887 1545 aa23.84■■□□□ 1.41
COPS3-201ENST00000268717 SAMD9Q5K651 1589 aa23.81■■□□□ 1.4
COPS3-201ENST00000268717 PPARGC1BQ86YN6 1023 aaKnown RBP23.81■■□□□ 1.4
COPS3-201ENST00000268717 APLP2Q06481 763 aa23.77■■□□□ 1.4
COPS3-201ENST00000268717 ABCC10Q5T3U5 1492 aa23.77■■□□□ 1.4
COPS3-201ENST00000268717 KDM5BQ9UGL1 1544 aa23.75■■□□□ 1.39
COPS3-201ENST00000268717 PLB1Q6P1J6 1458 aa23.75■■□□□ 1.39
COPS3-201ENST00000268717 DIP2BQ9P265 1576 aa23.75■■□□□ 1.39
COPS3-201ENST00000268717 ABCA8O94911 1581 aa23.74■■□□□ 1.39
COPS3-201ENST00000268717 MAP3K1Q13233 1512 aa23.73■■□□□ 1.39
COPS3-201ENST00000268717 ZCCHC11Q5TAX3 1644 aaKnown RBP23.72■■□□□ 1.39
COPS3-201ENST00000268717 P3H3Q8IVL6 736 aa23.72■■□□□ 1.39
COPS3-201ENST00000268717 FAM69CQ0P6D2 419 aa23.7■■□□□ 1.38
COPS3-201ENST00000268717 FMN1Q68DA7 1419 aa23.69■■□□□ 1.38
COPS3-201ENST00000268717 ASXL2Q76L83 1435 aa23.69■■□□□ 1.38
COPS3-201ENST00000268717 FHOD3Q2V2M9 1422 aa23.69■■□□□ 1.38
COPS3-201ENST00000268717 FYCO1Q9BQS8 1478 aa23.66■■□□□ 1.38
COPS3-201ENST00000268717 CASKIN1Q8WXD9 1431 aa23.64■■□□□ 1.38
COPS3-201ENST00000268717 PCF11O94913 1555 aaKnown RBP23.61■■□□□ 1.37
COPS3-201ENST00000268717 RAPGEF6Q8TEU7 1601 aa23.6■■□□□ 1.37
COPS3-201ENST00000268717 GLI2P10070 1586 aa23.59■■□□□ 1.37
COPS3-201ENST00000268717 TIAM1Q13009 1591 aa23.59■■□□□ 1.37
COPS3-201ENST00000268717 TSPOAP1O95153 1857 aa23.58■■□□□ 1.37
COPS3-201ENST00000268717 EPRSP07814 1512 aaKnown RBP23.56■■□□□ 1.36
COPS3-201ENST00000268717 WDR7Q9Y4E6 1490 aa23.56■■□□□ 1.36
COPS3-201ENST00000268717 CFAP43Q8NDM7 1665 aa23.54■■□□□ 1.36
COPS3-201ENST00000268717 ATP10BO94823 1461 aa23.53■■□□□ 1.36
COPS3-201ENST00000268717 NUP153P49790 1475 aaKnown RBP23.49■■□□□ 1.35
COPS3-201ENST00000268717 MAP3K4Q9Y6R4 1608 aa23.49■■□□□ 1.35
COPS3-201ENST00000268717 ARID3CA6NKF2 412 aa23.49■■□□□ 1.35
COPS3-201ENST00000268717 KANK4Q5T7N3 995 aaPredicted RBP23.49■■□□□ 1.35
COPS3-201ENST00000268717 LRRC9Q6ZRR7 1453 aa23.49■■□□□ 1.35
COPS3-201ENST00000268717 PPRC1Q5VV67 1664 aaKnown RBP23.48■■□□□ 1.35
COPS3-201ENST00000268717 KCNH8Q96L42 1107 aa23.41■■□□□ 1.34
COPS3-201ENST00000268717 CCDC18Q5T9S5 1454 aa23.41■■□□□ 1.34
COPS3-201ENST00000268717 HECW1Q76N89 1606 aa23.41■■□□□ 1.34
COPS3-201ENST00000268717 RRBP1Q9P2E9 1410 aaKnown RBP23.4■■□□□ 1.34
COPS3-201ENST00000268717 KDM6BO15054 1643 aa23.39■■□□□ 1.34
COPS3-201ENST00000268717 HRCP23327 699 aa23.39■■□□□ 1.33
COPS3-201ENST00000268717 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.38■■□□□ 1.33
COPS3-201ENST00000268717 HNRNPUL2Q1KMD3 747 aaKnown RBP23.38■■□□□ 1.33
COPS3-201ENST00000268717 ATP1B4Q9UN42 357 aaPredicted RBP23.37■■□□□ 1.33
COPS3-201ENST00000268717 TEX14Q8IWB6 1497 aa23.36■■□□□ 1.33
COPS3-201ENST00000268717 CD109Q6YHK3 1445 aa23.34■■□□□ 1.33
COPS3-201ENST00000268717 LRRIQ1Q96JM4 1722 aa23.34■■□□□ 1.33
COPS3-201ENST00000268717 ABCA9Q8IUA7 1624 aa23.33■■□□□ 1.32
COPS3-201ENST00000268717 CDK13Q14004 1512 aaKnown RBP23.32■■□□□ 1.32
COPS3-201ENST00000268717 MAGI3Q5TCQ9 1506 aa23.32■■□□□ 1.32
COPS3-201ENST00000268717 EHBP1L1Q8N3D4 1523 aa23.29■■□□□ 1.32
COPS3-201ENST00000268717 PLEKHD1A6NEE1 506 aa23.29■■□□□ 1.32
COPS3-201ENST00000268717 CCNB3Q8WWL7 1395 aa23.28■■□□□ 1.32
COPS3-201ENST00000268717 MTUS2Q5JR59 1369 aa23.27■■□□□ 1.32
COPS3-201ENST00000268717 COL17A1Q9UMD9 1497 aaPredicted RBP23.24■■□□□ 1.31
COPS3-201ENST00000268717 PHLDB1Q86UU1 1377 aa23.24■■□□□ 1.31
COPS3-201ENST00000268717 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.2■■□□□ 1.3
COPS3-201ENST00000268717 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.19■■□□□ 1.36e-8■■■■□ 20.3
COPS3-201ENST00000268717 ZEB1P37275 1124 aaPredicted RBP23.18■■□□□ 1.3
COPS3-201ENST00000268717 SUPT6HQ7KZ85 1726 aaKnown RBP23.17■■□□□ 1.3
COPS3-201ENST00000268717 TTC37Q6PGP7 1564 aa23.16■■□□□ 1.3
COPS3-201ENST00000268717 CDK11AQ9UQ88 783 aaPredicted RBP23.16■■□□□ 1.3
COPS3-201ENST00000268717 NCOA2Q15596 1464 aa23.15■■□□□ 1.3
COPS3-201ENST00000268717 NEO1Q92859 1461 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms