RNA–Protein interactions for RNA: ENST00000261584.8

PALB2-201, Transcript of partner and localizer of BRCA2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PALB2, Length 4,003 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-201ENST00000261584 CLSPNQ9HAW4 1339 aa13.9□□□□□ -0.18
PALB2-201ENST00000261584 RAPGEF2Q9Y4G8 1499 aa13.89□□□□□ -0.19
PALB2-201ENST00000261584 CCDC136Q96JN2 1154 aa13.88□□□□□ -0.19
PALB2-201ENST00000261584 VPS8Q8N3P4 1428 aa13.88□□□□□ -0.19
PALB2-201ENST00000261584 CEP164Q9UPV0 1460 aa13.87□□□□□ -0.19
PALB2-201ENST00000261584 RAB3GAP2Q9H2M9 1393 aa13.86□□□□□ -0.19
PALB2-201ENST00000261584 CCNB3Q8WWL7 1395 aa13.86□□□□□ -0.19
PALB2-201ENST00000261584 ARXQ96QS3 562 aa13.86□□□□□ -0.19
PALB2-201ENST00000261584 EIF5BO60841 1220 aaKnown RBP13.85□□□□□ -0.19
PALB2-201ENST00000261584 KDM2AQ9Y2K7 1162 aa13.85□□□□□ -0.19
PALB2-201ENST00000261584 ANP32AP39687 249 aaKnown RBP13.84□□□□□ -0.19
PALB2-201ENST00000261584 LAS1LQ9Y4W2 734 aaKnown RBP13.83□□□□□ -0.19
PALB2-201ENST00000261584 SLC4A1APQ9BWU0 796 aaKnown RBP13.82□□□□□ -0.2
PALB2-201ENST00000261584 BICRAQ9NZM4 1560 aa13.81□□□□□ -0.2
PALB2-201ENST00000261584 EEA1Q15075 1411 aa13.81□□□□□ -0.2
PALB2-201ENST00000261584 FBLN2P98095 1184 aa13.81□□□□□ -0.2
PALB2-201ENST00000261584 DEKP35659 375 aaKnown RBP13.79□□□□□ -0.2
PALB2-201ENST00000261584 ZBTB47Q9UFB7 747 aaPredicted RBP13.78□□□□□ -0.2
PALB2-201ENST00000261584 MYT1LQ9UL68 1186 aa13.76□□□□□ -0.21
PALB2-201ENST00000261584 BAZ1AQ9NRL2 1556 aaPredicted RBP13.76□□□□□ -0.21
PALB2-201ENST00000261584 EIF4G2P78344 907 aaKnown RBP eCLIP13.76□□□□□ -0.21
PALB2-201ENST00000261584 TMC1Q8TDI8 760 aa13.76□□□□□ -0.21
PALB2-201ENST00000261584 MTUS2Q5JR59 1369 aa13.74□□□□□ -0.21
PALB2-201ENST00000261584 HSPA5P11021 654 aaKnown RBP13.74□□□□□ -0.21
PALB2-201ENST00000261584 SENP3Q9H4L4 574 aaPredicted RBP13.74□□□□□ -0.21
PALB2-201ENST00000261584 PPP1R15AO75807 674 aaPredicted RBP13.73□□□□□ -0.21
PALB2-201ENST00000261584 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.7□□□□□ -0.22
PALB2-201ENST00000261584 MSH5O43196 834 aa13.69□□□□□ -0.22
PALB2-201ENST00000261584 EIF4G1Q04637 1599 aaKnown RBP13.69□□□□□ -0.22
PALB2-201ENST00000261584 PPP4R2Q9NY27 417 aa13.69□□□□□ -0.22
PALB2-201ENST00000261584 CCDC184Q52MB2 194 aa13.69□□□□□ -0.22
PALB2-201ENST00000261584 NOP58Q9Y2X3 529 aaKnown RBP13.68□□□□□ -0.22
PALB2-201ENST00000261584 SETD5Q9C0A6 1442 aa13.67□□□□□ -0.22
PALB2-201ENST00000261584 RGL3Q3MIN7 710 aa13.66□□□□□ -0.22
PALB2-201ENST00000261584 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.64□□□□□ -0.232e-6■□□□□ 9.7
PALB2-201ENST00000261584 SMARCA4P51532 1647 aa13.63□□□□□ -0.23
PALB2-201ENST00000261584 KIF27Q86VH2 1401 aa13.62□□□□□ -0.23
PALB2-201ENST00000261584 CCER2I3L3R5 266 aa13.61□□□□□ -0.23
PALB2-201ENST00000261584 NEFMP07197 916 aa13.61□□□□□ -0.23
PALB2-201ENST00000261584 PAK3O75914 559 aaPredicted RBP13.59□□□□□ -0.23
PALB2-201ENST00000261584 L3MBTL2Q969R5 705 aa13.59□□□□□ -0.23
PALB2-201ENST00000261584 TOP2AP11388 1531 aaKnown RBP13.58□□□□□ -0.23
PALB2-201ENST00000261584 SLC4A3P48751 1232 aa13.58□□□□□ -0.24
PALB2-201ENST00000261584 CUX2O14529 1486 aa13.58□□□□□ -0.24
PALB2-201ENST00000261584 PEG3Q9GZU2 1588 aa13.57□□□□□ -0.24
PALB2-201ENST00000261584 RGS3P49796 1198 aa13.56□□□□□ -0.24
PALB2-201ENST00000261584 CARMIL1Q5VZK9 1371 aa13.56□□□□□ -0.24
PALB2-201ENST00000261584 KIF21BO75037 1637 aa13.56□□□□□ -0.24
PALB2-201ENST00000261584 SMARCA2P51531 1590 aa13.55□□□□□ -0.24
PALB2-201ENST00000261584 CC2D1BQ5T0F9 858 aaKnown RBP13.55□□□□□ -0.24
PALB2-201ENST00000261584 FHOD3Q2V2M9 1422 aa13.55□□□□□ -0.24
PALB2-201ENST00000261584 CANXP27824 592 aaKnown RBP13.55□□□□□ -0.24
PALB2-201ENST00000261584 PHLDB1Q86UU1 1377 aa13.54□□□□□ -0.24
PALB2-201ENST00000261584 ARAP1Q96P48 1450 aa13.53□□□□□ -0.24
PALB2-201ENST00000261584 PLIN1O60240 522 aa13.53□□□□□ -0.24
PALB2-201ENST00000261584 SKAP1Q86WV1 359 aa13.53□□□□□ -0.24
PALB2-201ENST00000261584 CARD11Q9BXL7 1154 aa13.5□□□□□ -0.25
PALB2-201ENST00000261584 ANO8Q9HCE9 1232 aaPredicted RBP13.49□□□□□ -0.25
PALB2-201ENST00000261584 WASHC2AQ641Q2 1341 aa13.48□□□□□ -0.25
PALB2-201ENST00000261584 MPHOSPH9Q99550 1183 aa13.48□□□□□ -0.25
PALB2-201ENST00000261584 NEUROD2Q15784 382 aa13.48□□□□□ -0.25
PALB2-201ENST00000261584 PRKRIP1Q9H875 184 aaPredicted RBP13.48□□□□□ -0.25
PALB2-201ENST00000261584 WDR97A6NE52 1622 aa13.47□□□□□ -0.25
PALB2-201ENST00000261584 SYNJ1O43426 1573 aa13.47□□□□□ -0.25
PALB2-201ENST00000261584 IL27Q8NEV9 243 aa13.46□□□□□ -0.25
PALB2-201ENST00000261584 SPRYD3Q8NCJ5 442 aa13.45□□□□□ -0.26
PALB2-201ENST00000261584 EXOC6Q8TAG9 804 aa13.44□□□□□ -0.26
PALB2-201ENST00000261584 DCAF11Q8TEB1 546 aa13.44□□□□□ -0.26
PALB2-201ENST00000261584 C11orf95C9JLR9 678 aaPredicted RBP13.43□□□□□ -0.26
PALB2-201ENST00000261584 TDRD9Q8NDG6 1382 aaKnown RBP13.43□□□□□ -0.26
PALB2-201ENST00000261584 TNNT2P45379 298 aaPredicted RBP13.43□□□□□ -0.26
PALB2-201ENST00000261584 ARHGAP35Q9NRY4 1499 aa13.41□□□□□ -0.26
PALB2-201ENST00000261584 IPO9Q96P70 1041 aaKnown RBP13.41□□□□□ -0.26
PALB2-201ENST00000261584 ARID4BQ4LE39 1312 aaPredicted RBP13.4□□□□□ -0.26
PALB2-201ENST00000261584 CHGAP10645 457 aaKnown RBP13.4□□□□□ -0.26
PALB2-201ENST00000261584 FANCIQ9NVI1 1328 aa13.39□□□□□ -0.27
PALB2-201ENST00000261584 PKD2Q13563 968 aa13.39□□□□□ -0.27
PALB2-201ENST00000261584 CFDP1Q9UEE9 299 aaPredicted RBP13.39□□□□□ -0.27
PALB2-201ENST00000261584 AKNAQ7Z591 1439 aa13.39□□□□□ -0.27
PALB2-201ENST00000261584 ZNF644Q9H582 1327 aaPredicted RBP13.38□□□□□ -0.27
PALB2-201ENST00000261584 TIMELESSQ9UNS1 1208 aa13.37□□□□□ -0.27
PALB2-201ENST00000261584 WDR43Q15061 677 aaKnown RBP eCLIP13.37□□□□□ -0.27
PALB2-201ENST00000261584 NUDCQ9Y266 331 aa13.36□□□□□ -0.27
PALB2-201ENST00000261584 ATAD2BQ9ULI0 1458 aa13.36□□□□□ -0.27
PALB2-201ENST00000261584 RCAN3Q9UKA8 241 aa13.36□□□□□ -0.27
PALB2-201ENST00000261584 FRAT1Q92837 279 aaPredicted RBP13.35□□□□□ -0.27
PALB2-201ENST00000261584 NBPF8Q3BBV2 869 aa13.35□□□□□ -0.27
PALB2-201ENST00000261584 SLKQ9H2G2 1235 aaPredicted RBP13.35□□□□□ -0.27
PALB2-201ENST00000261584 CDCA7LQ96GN5 454 aa13.34□□□□□ -0.27
PALB2-201ENST00000261584 IGF1RP08069 1367 aa13.34□□□□□ -0.27
PALB2-201ENST00000261584 ST20-MTHFSA0A0A6YYL1 179 aa13.33□□□□□ -0.28
PALB2-201ENST00000261584 TSPY4P0CV99 314 aa13.33□□□□□ -0.28
PALB2-201ENST00000261584 TSPY10P0CW01 314 aa13.33□□□□□ -0.28
PALB2-201ENST00000261584 FHAD1B1AJZ9 1412 aa13.33□□□□□ -0.28
PALB2-201ENST00000261584 KIF7Q2M1P5 1343 aa13.32□□□□□ -0.28
PALB2-201ENST00000261584 PDE4AP27815 886 aa13.31□□□□□ -0.28
PALB2-201ENST00000261584 RRBP1Q9P2E9 1410 aaKnown RBP13.31□□□□□ -0.28
PALB2-201ENST00000261584 CCDC18Q5T9S5 1454 aa13.31□□□□□ -0.28
PALB2-201ENST00000261584 CCDC146Q8IYE0 955 aa13.31□□□□□ -0.28
PALB2-201ENST00000261584 GZF1Q9H116 711 aaPredicted RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 350.5 ms