RNA–Protein interactions for RNA: ENST00000257181.9

PRPF38A-201, Transcript of pre-mRNA processing factor 38A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRPF38A, Length 5,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-201ENST00000257181 FMN1Q68DA7 1419 aa18.54■□□□□ 0.56
PRPF38A-201ENST00000257181 CEP162Q5TB80 1403 aa18.53■□□□□ 0.56
PRPF38A-201ENST00000257181 PLPPR3Q6T4P5 718 aa18.53■□□□□ 0.56
PRPF38A-201ENST00000257181 HMGXB3Q12766 1538 aa18.52■□□□□ 0.56
PRPF38A-201ENST00000257181 TONSLQ96HA7 1378 aa18.52■□□□□ 0.56
PRPF38A-201ENST00000257181 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.51■□□□□ 0.555e-7■■■□□ 14.9
PRPF38A-201ENST00000257181 RSPH4AQ5TD94 716 aa18.51■□□□□ 0.55
PRPF38A-201ENST00000257181 C14orf37Q86TY3 774 aa18.5■□□□□ 0.55
PRPF38A-201ENST00000257181 EFCAB2Q5VUJ9 269 aa18.48■□□□□ 0.55
PRPF38A-201ENST00000257181 CDCA8Q53HL2 280 aa18.47■□□□□ 0.55
PRPF38A-201ENST00000257181 MRC2Q9UBG0 1479 aa18.47■□□□□ 0.55
PRPF38A-201ENST00000257181 ANP32CO43423 234 aa18.43■□□□□ 0.54
PRPF38A-201ENST00000257181 DAXXQ9UER7 740 aaPredicted RBP18.43■□□□□ 0.54
PRPF38A-201ENST00000257181 RAPGEF2Q9Y4G8 1499 aa18.41■□□□□ 0.54
PRPF38A-201ENST00000257181 IFT140Q96RY7 1462 aa18.41■□□□□ 0.54
PRPF38A-201ENST00000257181 CC2D2AQ9P2K1 1620 aa18.38■□□□□ 0.53
PRPF38A-201ENST00000257181 TDRD9Q8NDG6 1382 aaKnown RBP18.38■□□□□ 0.53
PRPF38A-201ENST00000257181 HAP1P54257 671 aaPredicted RBP18.37■□□□□ 0.53
PRPF38A-201ENST00000257181 NPM2Q86SE8 214 aaKnown RBP18.35■□□□□ 0.53
PRPF38A-201ENST00000257181 AEBP2Q6ZN18 517 aaPredicted RBP18.34■□□□□ 0.53
PRPF38A-201ENST00000257181 WIZO95785 1651 aa18.32■□□□□ 0.52
PRPF38A-201ENST00000257181 JPH4Q96JJ6 628 aa18.31■□□□□ 0.52
PRPF38A-201ENST00000257181 PTPRGP23470 1445 aa18.3■□□□□ 0.52
PRPF38A-201ENST00000257181 CCDC18Q5T9S5 1454 aa18.3■□□□□ 0.52
PRPF38A-201ENST00000257181 CHIC2Q9UKJ5 165 aa18.29■□□□□ 0.52
PRPF38A-201ENST00000257181 GRIN2BQ13224 1484 aa18.28■□□□□ 0.52
PRPF38A-201ENST00000257181 GAPVD1Q14C86 1478 aa18.28■□□□□ 0.52
PRPF38A-201ENST00000257181 LAMC3Q9Y6N6 1575 aa18.28■□□□□ 0.52
PRPF38A-201ENST00000257181 SCAF1Q9H7N4 1312 aaKnown RBP18.23■□□□□ 0.51
PRPF38A-201ENST00000257181 CANXP27824 592 aaKnown RBP18.22■□□□□ 0.51
PRPF38A-201ENST00000257181 EID1Q9Y6B2 187 aa18.22■□□□□ 0.51
PRPF38A-201ENST00000257181 ARHGAP35Q9NRY4 1499 aa18.2■□□□□ 0.5
PRPF38A-201ENST00000257181 CFTRP13569 1480 aa18.18■□□□□ 0.5
PRPF38A-201ENST00000257181 ANKRD30AQ9BXX3 1397 aa18.18■□□□□ 0.5
PRPF38A-201ENST00000257181 CLSPNQ9HAW4 1339 aa18.16■□□□□ 0.5
PRPF38A-201ENST00000257181 POGKQ9P215 609 aa18.15■□□□□ 0.5
PRPF38A-201ENST00000257181 HRCP23327 699 aa18.14■□□□□ 0.5
PRPF38A-201ENST00000257181 FGD5Q6ZNL6 1462 aa18.14■□□□□ 0.5
PRPF38A-201ENST00000257181 CFAP53Q96M91 514 aa18.14■□□□□ 0.49
PRPF38A-201ENST00000257181 CNGB1Q14028 1251 aaPredicted RBP18.13■□□□□ 0.49
PRPF38A-201ENST00000257181 CYB5RLQ6IPT4 315 aa18.12■□□□□ 0.49
PRPF38A-201ENST00000257181 SPAG9O60271 1321 aaKnown RBP18.1■□□□□ 0.49
PRPF38A-201ENST00000257181 PNNQ9H307 717 aaKnown RBP18.1■□□□□ 0.49
PRPF38A-201ENST00000257181 RRP7BPQ9NSQ0 103 aa18.09■□□□□ 0.49
PRPF38A-201ENST00000257181 YTHDC1Q96MU7 727 aaKnown RBP18.06■□□□□ 0.48
PRPF38A-201ENST00000257181 WDR43Q15061 677 aaKnown RBP eCLIP18.05■□□□□ 0.48
PRPF38A-201ENST00000257181 UACAQ9BZF9 1416 aa18.05■□□□□ 0.48
PRPF38A-201ENST00000257181 VPS8Q8N3P4 1428 aa18.04■□□□□ 0.48
PRPF38A-201ENST00000257181 MLECQ14165 292 aa18.04■□□□□ 0.48
PRPF38A-201ENST00000257181 EIF4G2P78344 907 aaKnown RBP eCLIP18.04■□□□□ 0.48
PRPF38A-201ENST00000257181 DNMBPQ6XZF7 1577 aa18.03■□□□□ 0.48
PRPF38A-201ENST00000257181 TIMELESSQ9UNS1 1208 aa18.03■□□□□ 0.48
PRPF38A-201ENST00000257181 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.01■□□□□ 0.47
PRPF38A-201ENST00000257181 KDM2AQ9Y2K7 1162 aa18.01■□□□□ 0.47
PRPF38A-201ENST00000257181 POGZQ7Z3K3 1410 aa18.01■□□□□ 0.47
PRPF38A-201ENST00000257181 GGT6Q6P531 493 aa17.99■□□□□ 0.47
PRPF38A-201ENST00000257181 ZNF316A6NFI3 1004 aaPredicted RBP17.99■□□□□ 0.47
PRPF38A-201ENST00000257181 CHMP4AQ9BY43 222 aa17.99■□□□□ 0.47
PRPF38A-201ENST00000257181 FAM69CQ0P6D2 419 aa17.98■□□□□ 0.47
PRPF38A-201ENST00000257181 EIF3AQ14152 1382 aaKnown RBP17.98■□□□□ 0.47
PRPF38A-201ENST00000257181 NUDCQ9Y266 331 aa17.98■□□□□ 0.47
PRPF38A-201ENST00000257181 FOXD1Q16676 465 aa17.97■□□□□ 0.47
PRPF38A-201ENST00000257181 SYNJ2O15056 1496 aa17.96■□□□□ 0.47
PRPF38A-201ENST00000257181 PLEKHH2Q8IVE3 1493 aa17.96■□□□□ 0.47
PRPF38A-201ENST00000257181 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.96■□□□□ 0.47
PRPF38A-201ENST00000257181 DIEXFQ68CQ4 756 aaKnown RBP17.95■□□□□ 0.46
PRPF38A-201ENST00000257181 WASHC2CQ9Y4E1 1318 aa17.94■□□□□ 0.46
PRPF38A-201ENST00000257181 EIF5BO60841 1220 aaKnown RBP17.93■□□□□ 0.46
PRPF38A-201ENST00000257181 TOPBP1Q92547 1522 aa17.92■□□□□ 0.46
PRPF38A-201ENST00000257181 BICRAQ9NZM4 1560 aa17.91■□□□□ 0.46
PRPF38A-201ENST00000257181 MAGI1Q96QZ7 1491 aaPredicted RBP17.91■□□□□ 0.46
PRPF38A-201ENST00000257181 STAC3Q96MF2 364 aa17.91■□□□□ 0.46
PRPF38A-201ENST00000257181 TMC1Q8TDI8 760 aa17.9■□□□□ 0.46
PRPF38A-201ENST00000257181 KNSTRNQ9Y448 316 aa17.9■□□□□ 0.46
PRPF38A-201ENST00000257181 SYNJ1O43426 1573 aa17.89■□□□□ 0.46
PRPF38A-201ENST00000257181 A0A0G2JS52 829 aa17.89■□□□□ 0.45
PRPF38A-201ENST00000257181 ZBTB7CA1YPR0 619 aa17.89■□□□□ 0.45
PRPF38A-201ENST00000257181 HDGFL2Q7Z4V5 671 aaPredicted RBP17.88■□□□□ 0.45
PRPF38A-201ENST00000257181 CUX1P39880 1505 aa17.87■□□□□ 0.45
PRPF38A-201ENST00000257181 KIF3BO15066 747 aa17.87■□□□□ 0.45
PRPF38A-201ENST00000257181 EFCAB5A4FU69 1503 aa17.86■□□□□ 0.45
PRPF38A-201ENST00000257181 TMF1P82094 1093 aa17.86■□□□□ 0.45
PRPF38A-201ENST00000257181 CHMP4BQ9H444 224 aaKnown RBP17.86■□□□□ 0.45
PRPF38A-201ENST00000257181 AQRO60306 1485 aaKnown RBP eCLIP17.86■□□□□ 0.452e-8■■■■□ 20.3
PRPF38A-201ENST00000257181 PRG4Q92954 1404 aaPredicted RBP17.86■□□□□ 0.45
PRPF38A-201ENST00000257181 CARD11Q9BXL7 1154 aa17.85■□□□□ 0.45
PRPF38A-201ENST00000257181 RGL3Q3MIN7 710 aa17.85■□□□□ 0.45
PRPF38A-201ENST00000257181 HMGB2P26583 209 aaKnown RBP17.84■□□□□ 0.45
PRPF38A-201ENST00000257181 RAD54L2Q9Y4B4 1467 aa17.84■□□□□ 0.45
PRPF38A-201ENST00000257181 IGF1RP08069 1367 aa17.84■□□□□ 0.45
PRPF38A-201ENST00000257181 MYH16Q9H6N6 1097 aa17.83■□□□□ 0.45
PRPF38A-201ENST00000257181 PEG3Q9GZU2 1588 aa17.83■□□□□ 0.45
PRPF38A-201ENST00000257181 LMOD2Q6P5Q4 547 aa17.83■□□□□ 0.44
PRPF38A-201ENST00000257181 MYT1Q01538 1121 aa17.82■□□□□ 0.44
PRPF38A-201ENST00000257181 FHOD3Q2V2M9 1422 aa17.82■□□□□ 0.44
PRPF38A-201ENST00000257181 ERICH3Q5RHP9 1530 aa17.81■□□□□ 0.44
PRPF38A-201ENST00000257181 SNAPC4Q5SXM2 1469 aa17.81■□□□□ 0.44
PRPF38A-201ENST00000257181 SETD5Q9C0A6 1442 aa17.79■□□□□ 0.44
PRPF38A-201ENST00000257181 MAPK8IP3Q9UPT6 1336 aa17.78■□□□□ 0.44
PRPF38A-201ENST00000257181 NUP155O75694 1391 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms