RNA–Protein interactions for RNA: ENST00000256552.10

TRPM1-201, Transcript of transient receptor potential cation channel subfamily M member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRPM1, Length 5,514 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRPM1-201ENST00000256552 FANCIQ9NVI1 1328 aa13.64□□□□□ -0.23
TRPM1-201ENST00000256552 TRIM44Q96DX7 344 aaPredicted RBP13.63□□□□□ -0.23
TRPM1-201ENST00000256552 B4GALNT3Q6L9W6 998 aa13.61□□□□□ -0.23
TRPM1-201ENST00000256552 A0A0U1RQG5 324 aaPredicted RBP13.61□□□□□ -0.23
TRPM1-201ENST00000256552 CDK11BP21127 795 aaKnown RBP13.61□□□□□ -0.23
TRPM1-201ENST00000256552 HSP90AA2PQ14568 343 aaPredicted RBP13.6□□□□□ -0.23
TRPM1-201ENST00000256552 TMC1Q8TDI8 760 aa13.55□□□□□ -0.24
TRPM1-201ENST00000256552 TIMELESSQ9UNS1 1208 aa13.53□□□□□ -0.24
TRPM1-201ENST00000256552 BECN1Q14457 450 aa13.52□□□□□ -0.24
TRPM1-201ENST00000256552 USP35Q9P2H5 1018 aa13.48□□□□□ -0.25
TRPM1-201ENST00000256552 CEP162Q5TB80 1403 aa13.48□□□□□ -0.25
TRPM1-201ENST00000256552 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.47□□□□□ -0.25
TRPM1-201ENST00000256552 PNNQ9H307 717 aaKnown RBP13.47□□□□□ -0.25
TRPM1-201ENST00000256552 SENP3-EIF4A1A0A087X0R7 540 aa13.46□□□□□ -0.25
TRPM1-201ENST00000256552 IL27Q8NEV9 243 aa13.44□□□□□ -0.26
TRPM1-201ENST00000256552 L1TD1Q5T7N2 865 aaKnown RBP13.44□□□□□ -0.26
TRPM1-201ENST00000256552 ARID4BQ4LE39 1312 aaPredicted RBP13.43□□□□□ -0.26
TRPM1-201ENST00000256552 P3H3Q8IVL6 736 aa13.43□□□□□ -0.26
TRPM1-201ENST00000256552 IPO9Q96P70 1041 aaKnown RBP13.43□□□□□ -0.26
TRPM1-201ENST00000256552 PDE4CQ08493 712 aa13.43□□□□□ -0.26
TRPM1-201ENST00000256552 CCER2I3L3R5 266 aa13.43□□□□□ -0.26
TRPM1-201ENST00000256552 EIF4G2P78344 907 aaKnown RBP eCLIP13.41□□□□□ -0.26
TRPM1-201ENST00000256552 ZCCHC6Q5VYS8 1495 aaKnown RBP13.4□□□□□ -0.26
TRPM1-201ENST00000256552 PLEKHG5O94827 1062 aa13.39□□□□□ -0.27
TRPM1-201ENST00000256552 CLIP1P30622 1438 aa13.39□□□□□ -0.27
TRPM1-201ENST00000256552 DNTTIP2Q5QJE6 756 aaKnown RBP13.34□□□□□ -0.27
TRPM1-201ENST00000256552 SIN3AQ96ST3 1273 aa13.34□□□□□ -0.27
TRPM1-201ENST00000256552 GOLGA6L22H0YM25 854 aa13.34□□□□□ -0.27
TRPM1-201ENST00000256552 ZMYND15Q9H091 742 aa13.33□□□□□ -0.27
TRPM1-201ENST00000256552 GSE1Q14687 1217 aa13.33□□□□□ -0.28
TRPM1-201ENST00000256552 RGS3P49796 1198 aa13.33□□□□□ -0.28
TRPM1-201ENST00000256552 KCNH8Q96L42 1107 aa13.32□□□□□ -0.28
TRPM1-201ENST00000256552 PTMAP06454 111 aaKnown RBP13.32□□□□□ -0.28
TRPM1-201ENST00000256552 WDR43Q15061 677 aaKnown RBP eCLIP13.3□□□□□ -0.28
TRPM1-201ENST00000256552 AMER1Q5JTC6 1135 aaPredicted RBP13.3□□□□□ -0.28
TRPM1-201ENST00000256552 TNIKQ9UKE5 1360 aa13.3□□□□□ -0.28
TRPM1-201ENST00000256552 GOLGA3Q08378 1498 aa13.27□□□□□ -0.29
TRPM1-201ENST00000256552 RRP9O43818 475 aaKnown RBP13.27□□□□□ -0.29
TRPM1-201ENST00000256552 CHIC2Q9UKJ5 165 aa13.27□□□□□ -0.29
TRPM1-201ENST00000256552 MSNP26038 577 aaKnown RBP13.26□□□□□ -0.29
TRPM1-201ENST00000256552 TCERG1O14776 1098 aaKnown RBP13.25□□□□□ -0.29
TRPM1-201ENST00000256552 ARID3AQ99856 593 aa13.25□□□□□ -0.29
TRPM1-201ENST00000256552 FAM43AQ8N2R8 423 aa13.25□□□□□ -0.29
TRPM1-201ENST00000256552 MSH5O43196 834 aa13.25□□□□□ -0.29
TRPM1-201ENST00000256552 ARID3CA6NKF2 412 aa13.23□□□□□ -0.29
TRPM1-201ENST00000256552 GZF1Q9H116 711 aaPredicted RBP13.21□□□□□ -0.29
TRPM1-201ENST00000256552 PDIA4P13667 645 aaKnown RBP13.2□□□□□ -0.3
TRPM1-201ENST00000256552 SPRYD3Q8NCJ5 442 aa13.2□□□□□ -0.3
TRPM1-201ENST00000256552 GOLGA6L3A6NEY3 463 aa13.19□□□□□ -0.3
TRPM1-201ENST00000256552 BRPF3Q9ULD4 1205 aa13.19□□□□□ -0.3
TRPM1-201ENST00000256552 EEA1Q15075 1411 aa13.18□□□□□ -0.3
TRPM1-201ENST00000256552 SLKQ9H2G2 1235 aaPredicted RBP13.17□□□□□ -0.3
TRPM1-201ENST00000256552 KDM2AQ9Y2K7 1162 aa13.16□□□□□ -0.3
TRPM1-201ENST00000256552 ZNF777Q9ULD5 760 aaPredicted RBP13.16□□□□□ -0.3
TRPM1-201ENST00000256552 RSF1Q96T23 1441 aaPredicted RBP13.15□□□□□ -0.3
TRPM1-201ENST00000256552 HSP90AB1P08238 724 aaKnown RBP13.14□□□□□ -0.31
TRPM1-201ENST00000256552 CHAF1AQ13111 956 aaPredicted RBP13.14□□□□□ -0.31
TRPM1-201ENST00000256552 PTMSP20962 102 aa13.13□□□□□ -0.31
TRPM1-201ENST00000256552 TNNT3P45378 269 aaPredicted RBP13.13□□□□□ -0.31
TRPM1-201ENST00000256552 RRP7BPQ9NSQ0 103 aa13.13□□□□□ -0.31
TRPM1-201ENST00000256552 GOLGA6L6A8MZA4 724 aa13.13□□□□□ -0.31
TRPM1-201ENST00000256552 SCRIBQ14160 1630 aa13.12□□□□□ -0.31
TRPM1-201ENST00000256552 HSCBQ8IWL3 235 aa13.12□□□□□ -0.31
TRPM1-201ENST00000256552 SLC4A3P48751 1232 aa13.11□□□□□ -0.31
TRPM1-201ENST00000256552 ZRSR1Q15695 479 aaKnown RBP13.11□□□□□ -0.31
TRPM1-201ENST00000256552 MAP7D2Q96T17 732 aa13.11□□□□□ -0.31
TRPM1-201ENST00000256552 PDE4AP27815 886 aa13.11□□□□□ -0.31
TRPM1-201ENST00000256552 ZBTB7CA1YPR0 619 aa13.1□□□□□ -0.31
TRPM1-201ENST00000256552 TPRNQ4KMQ1 711 aa13.1□□□□□ -0.31
TRPM1-201ENST00000256552 PABPN1Q86U42 306 aaKnown RBP eCLIP13.1□□□□□ -0.31
TRPM1-201ENST00000256552 NUDCQ9Y266 331 aa13.1□□□□□ -0.31
TRPM1-201ENST00000256552 PLCB2Q00722 1185 aa13.1□□□□□ -0.31
TRPM1-201ENST00000256552 NRDCO43847 1150 aa13.09□□□□□ -0.31
TRPM1-201ENST00000256552 RBM10P98175 930 aaKnown RBP13.09□□□□□ -0.31
TRPM1-201ENST00000256552 CCNB3Q8WWL7 1395 aa13.09□□□□□ -0.31
TRPM1-201ENST00000256552 HSPA5P11021 654 aaKnown RBP13.09□□□□□ -0.31
TRPM1-201ENST00000256552 RCAN3Q9UKA8 241 aa13.09□□□□□ -0.31
TRPM1-201ENST00000256552 TPM2P07951 284 aa13.08□□□□□ -0.32
TRPM1-201ENST00000256552 MYH16Q9H6N6 1097 aa13.08□□□□□ -0.32
TRPM1-201ENST00000256552 TAF7LQ5H9L4 462 aa13.08□□□□□ -0.32
TRPM1-201ENST00000256552 MTUS2Q5JR59 1369 aa13.06□□□□□ -0.32
TRPM1-201ENST00000256552 CALRP27797 417 aaKnown RBP13.06□□□□□ -0.32
TRPM1-201ENST00000256552 CEP164Q9UPV0 1460 aa13.06□□□□□ -0.32
TRPM1-201ENST00000256552 PAK3O75914 559 aaPredicted RBP13.05□□□□□ -0.32
TRPM1-201ENST00000256552 FRAT1Q92837 279 aaPredicted RBP13.05□□□□□ -0.32
TRPM1-201ENST00000256552 MTERF4Q7Z6M4 381 aaKnown RBP13.03□□□□□ -0.32
TRPM1-201ENST00000256552 GBP4Q96PP9 640 aa13.03□□□□□ -0.32
TRPM1-201ENST00000256552 FTSJ3Q8IY81 847 aaKnown RBP13.03□□□□□ -0.32
TRPM1-201ENST00000256552 APPP05067 770 aa13.02□□□□□ -0.32
TRPM1-201ENST00000256552 SETD5Q9C0A6 1442 aa13.02□□□□□ -0.33
TRPM1-201ENST00000256552 CARD11Q9BXL7 1154 aa13.01□□□□□ -0.33
TRPM1-201ENST00000256552 DHX57Q6P158 1386 aaKnown RBP13.01□□□□□ -0.33
TRPM1-201ENST00000256552 PPP1R15AO75807 674 aaPredicted RBP13□□□□□ -0.33
TRPM1-201ENST00000256552 NFKBIBQ15653 356 aa13□□□□□ -0.33
TRPM1-201ENST00000256552 RAB3GAP2Q9H2M9 1393 aa12.99□□□□□ -0.33
TRPM1-201ENST00000256552 VPS8Q8N3P4 1428 aa12.99□□□□□ -0.33
TRPM1-201ENST00000256552 BAZ1BQ9UIG0 1483 aaKnown RBP12.98□□□□□ -0.33
TRPM1-201ENST00000256552 BBXQ8WY36 941 aaPredicted RBP12.98□□□□□ -0.33
TRPM1-201ENST00000256552 CC2D1BQ5T0F9 858 aaKnown RBP12.98□□□□□ -0.33
TRPM1-201ENST00000256552 FAM13BQ9NYF5 915 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms