RNA–Protein interactions for RNA: ENST00000253925.11

PPFIA1-201, Transcript of PTPRF interacting protein alpha 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PPFIA1, Length 5,234 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPFIA1-201ENST00000253925 SIN3AQ96ST3 1273 aa26.05■■□□□ 1.76
PPFIA1-201ENST00000253925 TSPY4P0CV99 314 aa26.04■■□□□ 1.76
PPFIA1-201ENST00000253925 TSPY10P0CW01 314 aa26.04■■□□□ 1.76
PPFIA1-201ENST00000253925 TIMELESSQ9UNS1 1208 aa26.04■■□□□ 1.76
PPFIA1-201ENST00000253925 CUX2O14529 1486 aa26.04■■□□□ 1.76
PPFIA1-201ENST00000253925 KANK4Q5T7N3 995 aaPredicted RBP26■■□□□ 1.75
PPFIA1-201ENST00000253925 CANXP27824 592 aaKnown RBP25.99■■□□□ 1.75
PPFIA1-201ENST00000253925 SMARCA4P51532 1647 aa25.98■■□□□ 1.75
PPFIA1-201ENST00000253925 CCDC136Q96JN2 1154 aa25.96■■□□□ 1.75
PPFIA1-201ENST00000253925 ANP32EQ9BTT0 268 aa25.96■■□□□ 1.75
PPFIA1-201ENST00000253925 CHMP7Q8WUX9 453 aaPredicted RBP25.93■■□□□ 1.74
PPFIA1-201ENST00000253925 SETD5Q9C0A6 1442 aa25.93■■□□□ 1.74
PPFIA1-201ENST00000253925 IRX6P78412 446 aaPredicted RBP25.9■■□□□ 1.74
PPFIA1-201ENST00000253925 NPM2Q86SE8 214 aaKnown RBP25.9■■□□□ 1.74
PPFIA1-201ENST00000253925 SUPT16HQ9Y5B9 1047 aaKnown RBP25.89■■□□□ 1.74
PPFIA1-201ENST00000253925 KDM2AQ9Y2K7 1162 aa25.89■■□□□ 1.73
PPFIA1-201ENST00000253925 RUSC2Q8N2Y8 1516 aa25.86■■□□□ 1.73
PPFIA1-201ENST00000253925 RAPGEF2Q9Y4G8 1499 aa25.85■■□□□ 1.73
PPFIA1-201ENST00000253925 SALL2Q9Y467 1007 aaPredicted RBP25.84■■□□□ 1.73
PPFIA1-201ENST00000253925 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.84■■□□□ 1.734e-7■■□□□ 14.4
PPFIA1-201ENST00000253925 ATAD2BQ9ULI0 1458 aa25.81■■□□□ 1.72
PPFIA1-201ENST00000253925 NBR1Q14596 966 aa25.81■■□□□ 1.72
PPFIA1-201ENST00000253925 RAB3GAP2Q9H2M9 1393 aa25.8■■□□□ 1.72
PPFIA1-201ENST00000253925 PLEKHD1A6NEE1 506 aa25.8■■□□□ 1.72
PPFIA1-201ENST00000253925 ARHGAP35Q9NRY4 1499 aa25.79■■□□□ 1.72
PPFIA1-201ENST00000253925 CFDP1Q9UEE9 299 aaPredicted RBP25.79■■□□□ 1.72
PPFIA1-201ENST00000253925 CCER2I3L3R5 266 aa25.78■■□□□ 1.72
PPFIA1-201ENST00000253925 BCL11AQ9H165 835 aa25.78■■□□□ 1.72
PPFIA1-201ENST00000253925 NEFMP07197 916 aa25.77■■□□□ 1.72
PPFIA1-201ENST00000253925 ZBTB47Q9UFB7 747 aaPredicted RBP25.75■■□□□ 1.71
PPFIA1-201ENST00000253925 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.71■■□□□ 1.71
PPFIA1-201ENST00000253925 WDR43Q15061 677 aaKnown RBP eCLIP25.7■■□□□ 1.7
PPFIA1-201ENST00000253925 CHGAP10645 457 aaKnown RBP25.67■■□□□ 1.7
PPFIA1-201ENST00000253925 GLIPR1L2Q4G1C9 344 aa25.66■■□□□ 1.7
PPFIA1-201ENST00000253925 DHX57Q6P158 1386 aaKnown RBP25.65■■□□□ 1.7
PPFIA1-201ENST00000253925 FMN1Q68DA7 1419 aa25.65■■□□□ 1.7
PPFIA1-201ENST00000253925 CARD11Q9BXL7 1154 aa25.62■■□□□ 1.69
PPFIA1-201ENST00000253925 PPP4R2Q9NY27 417 aa25.62■■□□□ 1.69
PPFIA1-201ENST00000253925 PPP1R15AO75807 674 aaPredicted RBP25.59■■□□□ 1.69
PPFIA1-201ENST00000253925 CADPSQ9ULU8 1353 aa25.58■■□□□ 1.69
PPFIA1-201ENST00000253925 EIF4G1Q04637 1599 aaKnown RBP25.57■■□□□ 1.68
PPFIA1-201ENST00000253925 RGL3Q3MIN7 710 aa25.55■■□□□ 1.68
PPFIA1-201ENST00000253925 UPF2Q9HAU5 1272 aaKnown RBP25.55■■□□□ 1.68
PPFIA1-201ENST00000253925 NPM1P06748 294 aaKnown RBP eCLIP25.53■■□□□ 1.68
PPFIA1-201ENST00000253925 HSPA5P11021 654 aaKnown RBP25.53■■□□□ 1.68
PPFIA1-201ENST00000253925 FHOD3Q2V2M9 1422 aa25.47■■□□□ 1.67
PPFIA1-201ENST00000253925 TDRD9Q8NDG6 1382 aaKnown RBP25.45■■□□□ 1.66
PPFIA1-201ENST00000253925 CDCA8Q53HL2 280 aa25.45■■□□□ 1.66
PPFIA1-201ENST00000253925 KCNH8Q96L42 1107 aa25.45■■□□□ 1.66
PPFIA1-201ENST00000253925 PDS5BQ9NTI5 1447 aa25.42■■□□□ 1.66
PPFIA1-201ENST00000253925 MPHOSPH9Q99550 1183 aa25.41■■□□□ 1.66
PPFIA1-201ENST00000253925 KNSTRNQ9Y448 316 aa25.4■■□□□ 1.66
PPFIA1-201ENST00000253925 STAG3Q9UJ98 1225 aa25.39■■□□□ 1.65
PPFIA1-201ENST00000253925 SENP3-EIF4A1A0A087X0R7 540 aa25.38■■□□□ 1.65
PPFIA1-201ENST00000253925 ERICH6BQ5W0A0 696 aa25.38■■□□□ 1.65
PPFIA1-201ENST00000253925 KIF21BO75037 1637 aa25.38■■□□□ 1.65
PPFIA1-201ENST00000253925 B4GALNT3Q6L9W6 998 aa25.35■■□□□ 1.65
PPFIA1-201ENST00000253925 DDRGK1Q96HY6 314 aa25.35■■□□□ 1.65
PPFIA1-201ENST00000253925 RBM19Q9Y4C8 960 aaKnown RBP25.33■■□□□ 1.65
PPFIA1-201ENST00000253925 FOXD1Q16676 465 aa25.32■■□□□ 1.64
PPFIA1-201ENST00000253925 DCAF11Q8TEB1 546 aa25.32■■□□□ 1.64
PPFIA1-201ENST00000253925 PKD2Q13563 968 aa25.3■■□□□ 1.64
PPFIA1-201ENST00000253925 IGF1RP08069 1367 aa25.29■■□□□ 1.64
PPFIA1-201ENST00000253925 ESF1Q9H501 851 aaKnown RBP25.29■■□□□ 1.64
PPFIA1-201ENST00000253925 HSP90AA1P07900 732 aaKnown RBP25.28■■□□□ 1.64
PPFIA1-201ENST00000253925 TSHZ2Q9NRE2 1034 aa25.28■■□□□ 1.64
PPFIA1-201ENST00000253925 ERCC6Q03468 1493 aa25.28■■□□□ 1.64
PPFIA1-201ENST00000253925 SLC24A1O60721 1099 aa25.27■■□□□ 1.64
PPFIA1-201ENST00000253925 L3MBTL2Q969R5 705 aa25.26■■□□□ 1.63
PPFIA1-201ENST00000253925 RTN4Q9NQC3 1192 aaKnown RBP25.24■■□□□ 1.63
PPFIA1-201ENST00000253925 TMF1P82094 1093 aa25.22■■□□□ 1.63
PPFIA1-201ENST00000253925 FANCD2Q9BXW9 1451 aa25.21■■□□□ 1.63
PPFIA1-201ENST00000253925 ERICH3Q5RHP9 1530 aa25.21■■□□□ 1.63
PPFIA1-201ENST00000253925 SYNJ1O43426 1573 aa25.21■■□□□ 1.63
PPFIA1-201ENST00000253925 CARMIL2Q6F5E8 1435 aa25.21■■□□□ 1.63
PPFIA1-201ENST00000253925 NOP58Q9Y2X3 529 aaKnown RBP25.2■■□□□ 1.63
PPFIA1-201ENST00000253925 NCAPD3P42695 1498 aa25.19■■□□□ 1.62
PPFIA1-201ENST00000253925 CC2D1BQ5T0F9 858 aaKnown RBP25.19■■□□□ 1.62
PPFIA1-201ENST00000253925 ANKRD30AQ9BXX3 1397 aa25.18■■□□□ 1.62
PPFIA1-201ENST00000253925 CFAP53Q96M91 514 aa25.18■■□□□ 1.62
PPFIA1-201ENST00000253925 ARXQ96QS3 562 aa25.18■■□□□ 1.62
PPFIA1-201ENST00000253925 CCDC18Q5T9S5 1454 aa25.17■■□□□ 1.62
PPFIA1-201ENST00000253925 FGD5Q6ZNL6 1462 aa25.16■■□□□ 1.62
PPFIA1-201ENST00000253925 PPM1GO15355 546 aaPredicted RBP25.15■■□□□ 1.62
PPFIA1-201ENST00000253925 BECN1Q14457 450 aa25.15■■□□□ 1.62
PPFIA1-201ENST00000253925 ANP32BQ92688 251 aaKnown RBP25.15■■□□□ 1.62
PPFIA1-201ENST00000253925 NUP155O75694 1391 aa25.14■■□□□ 1.62
PPFIA1-201ENST00000253925 RRBP1Q9P2E9 1410 aaKnown RBP25.11■■□□□ 1.61
PPFIA1-201ENST00000253925 RALBP1Q15311 655 aa25.11■■□□□ 1.61
PPFIA1-201ENST00000253925 ARAP1Q96P48 1450 aa25.1■■□□□ 1.61
PPFIA1-201ENST00000253925 KTN1Q86UP2 1357 aaKnown RBP25.1■■□□□ 1.61
PPFIA1-201ENST00000253925 LRRC9Q6ZRR7 1453 aa25.1■■□□□ 1.61
PPFIA1-201ENST00000253925 PHLDB1Q86UU1 1377 aa25.08■■□□□ 1.61
PPFIA1-201ENST00000253925 PRXQ9BXM0 1461 aa25.07■■□□□ 1.6
PPFIA1-201ENST00000253925 DEKP35659 375 aaKnown RBP25.07■■□□□ 1.6
PPFIA1-201ENST00000253925 FGD6Q6ZV73 1430 aa25.05■■□□□ 1.6
PPFIA1-201ENST00000253925 ROCK2O75116 1388 aaKnown RBP25.04■■□□□ 1.6
PPFIA1-201ENST00000253925 NUDCQ9Y266 331 aa25.03■■□□□ 1.6
PPFIA1-201ENST00000253925 MYH16Q9H6N6 1097 aa25.02■■□□□ 1.6
PPFIA1-201ENST00000253925 TOP2BQ02880 1626 aa25■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms