RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 RUSC2Q8N2Y8 1516 aa36.54■■■■□ 3.44
NEDD8-201ENST00000250495 CUL7Q14999 1698 aa36.51■■■■□ 3.43
NEDD8-201ENST00000250495 KIAA0586Q9BVV6 1533 aa36.46■■■■□ 3.43
NEDD8-201ENST00000250495 CARMIL1Q5VZK9 1371 aa36.4■■■■□ 3.42
NEDD8-201ENST00000250495 NPM1P06748 294 aaKnown RBP eCLIP36.34■■■■□ 3.41
NEDD8-201ENST00000250495 KIF13AQ9H1H9 1805 aa36.16■■■■□ 3.38
NEDD8-201ENST00000250495 ADCY10Q96PN6 1610 aa36.14■■■■□ 3.38
NEDD8-201ENST00000250495 CARMIL2Q6F5E8 1435 aa36.14■■■■□ 3.38
NEDD8-201ENST00000250495 PTPRGP23470 1445 aa36.13■■■■□ 3.37
NEDD8-201ENST00000250495 FAM69CQ0P6D2 419 aa36.12■■■■□ 3.37
NEDD8-201ENST00000250495 MAPKBP1O60336 1514 aa36.11■■■■□ 3.37
NEDD8-201ENST00000250495 ABCC10Q5T3U5 1492 aa36.09■■■■□ 3.37
NEDD8-201ENST00000250495 IQGAP2Q13576 1575 aa36.08■■■■□ 3.37
NEDD8-201ENST00000250495 TNIKQ9UKE5 1360 aa36.07■■■■□ 3.36
NEDD8-201ENST00000250495 RAPGEF2Q9Y4G8 1499 aa36.06■■■■□ 3.36
NEDD8-201ENST00000250495 TTBK1Q5TCY1 1321 aaPredicted RBP36.05■■■■□ 3.36
NEDD8-201ENST00000250495 AEBP2Q6ZN18 517 aaPredicted RBP35.96■■■■□ 3.35
NEDD8-201ENST00000250495 DIP2BQ9P265 1576 aa35.94■■■■□ 3.34
NEDD8-201ENST00000250495 DISP1Q96F81 1524 aa35.9■■■■□ 3.34
NEDD8-201ENST00000250495 ABCC2Q92887 1545 aa35.88■■■■□ 3.33
NEDD8-201ENST00000250495 UGGT2Q9NYU1 1516 aa35.88■■■■□ 3.33
NEDD8-201ENST00000250495 UHRF1BP1LA0JNW5 1464 aa35.84■■■■□ 3.33
NEDD8-201ENST00000250495 UACAQ9BZF9 1416 aa35.83■■■■□ 3.33
NEDD8-201ENST00000250495 PLB1Q6P1J6 1458 aa35.75■■■■□ 3.31
NEDD8-201ENST00000250495 ASXL2Q76L83 1435 aa35.74■■■■□ 3.31
NEDD8-201ENST00000250495 KIAA0556O60303 1618 aa35.73■■■■□ 3.31
NEDD8-201ENST00000250495 TSPOAP1O95153 1857 aa35.72■■■■□ 3.31
NEDD8-201ENST00000250495 PRXQ9BXM0 1461 aa35.7■■■■□ 3.31
NEDD8-201ENST00000250495 CTTNBP2Q8WZ74 1663 aa35.69■■■■□ 3.3
NEDD8-201ENST00000250495 KDM5BQ9UGL1 1544 aa35.66■■■■□ 3.3
NEDD8-201ENST00000250495 GOLGA3Q08378 1498 aa35.65■■■■□ 3.3
NEDD8-201ENST00000250495 KDM6BO15054 1643 aa35.63■■■■□ 3.29
NEDD8-201ENST00000250495 GLI2P10070 1586 aa35.63■■■■□ 3.29
NEDD8-201ENST00000250495 CSRNP3Q8WYN3 585 aa35.55■■■■□ 3.28
NEDD8-201ENST00000250495 ZCCHC11Q5TAX3 1644 aaKnown RBP35.54■■■■□ 3.28
NEDD8-201ENST00000250495 EPRSP07814 1512 aaKnown RBP35.52■■■■□ 3.28
NEDD8-201ENST00000250495 FAM9AQ8IZU1 332 aaPredicted RBP35.5■■■■□ 3.27
NEDD8-201ENST00000250495 PPRC1Q5VV67 1664 aaKnown RBP35.44■■■■□ 3.26
NEDD8-201ENST00000250495 ABCA8O94911 1581 aa35.42■■■■□ 3.26
NEDD8-201ENST00000250495 WDR7Q9Y4E6 1490 aa35.41■■■■□ 3.26
NEDD8-201ENST00000250495 EEA1Q15075 1411 aa35.39■■■■□ 3.26
NEDD8-201ENST00000250495 MAP3K4Q9Y6R4 1608 aa35.39■■■■□ 3.26
NEDD8-201ENST00000250495 TEX14Q8IWB6 1497 aa35.36■■■■□ 3.25
NEDD8-201ENST00000250495 P3H3Q8IVL6 736 aa35.36■■■■□ 3.25
NEDD8-201ENST00000250495 KCNH8Q96L42 1107 aa35.31■■■■□ 3.24
NEDD8-201ENST00000250495 KDM4FA0A1W2PPD8 638 aa35.27■■■■□ 3.24
NEDD8-201ENST00000250495 COL17A1Q9UMD9 1497 aaPredicted RBP35.24■■■■□ 3.23
NEDD8-201ENST00000250495 CD109Q6YHK3 1445 aa35.22■■■■□ 3.23
NEDD8-201ENST00000250495 SAMD9Q5K651 1589 aa35.21■■■■□ 3.23
NEDD8-201ENST00000250495 CFAP43Q8NDM7 1665 aa35.17■■■■□ 3.22
NEDD8-201ENST00000250495 ARID3CA6NKF2 412 aa35.17■■■■□ 3.22
NEDD8-201ENST00000250495 MAGI3Q5TCQ9 1506 aa35.16■■■■□ 3.22
NEDD8-201ENST00000250495 ATP10BO94823 1461 aa35.16■■■■□ 3.22
NEDD8-201ENST00000250495 RANGAP1P46060 587 aaPredicted RBP35.12■■■■□ 3.21
NEDD8-201ENST00000250495 RAPGEF6Q8TEU7 1601 aa35.06■■■■□ 3.2
NEDD8-201ENST00000250495 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.05■■■■□ 3.2
NEDD8-201ENST00000250495 HNRNPUL2Q1KMD3 747 aaKnown RBP35.05■■■■□ 3.2
NEDD8-201ENST00000250495 KIF21BO75037 1637 aa35.02■■■■□ 3.2
NEDD8-201ENST00000250495 FHOD3Q2V2M9 1422 aa34.99■■■■□ 3.19
NEDD8-201ENST00000250495 ADGRL1O94910 1474 aa34.97■■■■□ 3.19
NEDD8-201ENST00000250495 CHIC1Q5VXU3 224 aa34.96■■■■□ 3.19
NEDD8-201ENST00000250495 NUP153P49790 1475 aaKnown RBP34.93■■■■□ 3.18
NEDD8-201ENST00000250495 ABCA9Q8IUA7 1624 aa34.92■■■■□ 3.18
NEDD8-201ENST00000250495 PHLDB1Q86UU1 1377 aa34.91■■■■□ 3.18
NEDD8-201ENST00000250495 EFCAB5A4FU69 1503 aa34.91■■■■□ 3.18
NEDD8-201ENST00000250495 ARAP3Q8WWN8 1544 aa34.89■■■■□ 3.18
NEDD8-201ENST00000250495 PLEKHD1A6NEE1 506 aa34.88■■■■□ 3.17
NEDD8-201ENST00000250495 UBTFP17480 764 aaKnown RBP34.88■■■■□ 3.17
NEDD8-201ENST00000250495 EHMT2Q96KQ7 1210 aa34.82■■■■□ 3.16
NEDD8-201ENST00000250495 NEO1Q92859 1461 aa34.78■■■■□ 3.16
NEDD8-201ENST00000250495 RAPGEF3O95398 923 aa34.71■■■■□ 3.15
NEDD8-201ENST00000250495 FMN1Q68DA7 1419 aa34.65■■■■□ 3.14
NEDD8-201ENST00000250495 ATP1B4Q9UN42 357 aaPredicted RBP34.63■■■■□ 3.13
NEDD8-201ENST00000250495 ARHGAP35Q9NRY4 1499 aa34.61■■■■□ 3.13
NEDD8-201ENST00000250495 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.6■■■■□ 3.13
NEDD8-201ENST00000250495 CDK13Q14004 1512 aaKnown RBP34.58■■■■□ 3.13
NEDD8-201ENST00000250495 AKNAQ7Z591 1439 aa34.57■■■■□ 3.13
NEDD8-201ENST00000250495 FANCAO15360 1455 aa34.55■■■■□ 3.12
NEDD8-201ENST00000250495 CDK11AQ9UQ88 783 aaPredicted RBP34.55■■■■□ 3.12
NEDD8-201ENST00000250495 DENND4BO75064 1496 aaPredicted RBP34.54■■■■□ 3.12
NEDD8-201ENST00000250495 CFAP74Q9C0B2 1584 aa34.53■■■■□ 3.12
NEDD8-201ENST00000250495 HECW1Q76N89 1606 aa34.52■■■■□ 3.12
NEDD8-201ENST00000250495 FRMPD1Q5SYB0 1578 aa34.51■■■■□ 3.12
NEDD8-201ENST00000250495 TTC37Q6PGP7 1564 aa34.5■■■■□ 3.11
NEDD8-201ENST00000250495 ARID4BQ4LE39 1312 aaPredicted RBP34.46■■■■□ 3.11
NEDD8-201ENST00000250495 PLCH2O75038 1416 aa34.44■■■■□ 3.1
NEDD8-201ENST00000250495 HECW2Q9P2P5 1572 aa34.43■■■■□ 3.1
NEDD8-201ENST00000250495 RICTORQ6R327 1708 aa34.43■■■■□ 3.1
NEDD8-201ENST00000250495 ADAMTSL3P82987 1691 aa34.39■■■■□ 3.1
NEDD8-201ENST00000250495 EFCAB2Q5VUJ9 269 aa34.37■■■■□ 3.09
NEDD8-201ENST00000250495 ARHGEF40Q8TER5 1519 aa34.35■■■■□ 3.09
NEDD8-201ENST00000250495 TROQ12816 1431 aaPredicted RBP34.34■■■■□ 3.09
NEDD8-201ENST00000250495 SCAPERQ9BY12 1400 aa34.34■■■■□ 3.09
NEDD8-201ENST00000250495 PTPRMP28827 1452 aa34.33■■■■□ 3.09
NEDD8-201ENST00000250495 BCORL1Q5H9F3 1711 aa34.33■■■■□ 3.09
NEDD8-201ENST00000250495 CLIP1P30622 1438 aa34.32■■■■□ 3.08
NEDD8-201ENST00000250495 MAGI2Q86UL8 1455 aa34.32■■■■□ 3.08
NEDD8-201ENST00000250495 ZMYM4Q5VZL5 1548 aa34.31■■■■□ 3.08
NEDD8-201ENST00000250495 MYO5CQ9NQX4 1742 aa34.3■■■■□ 3.08
NEDD8-201ENST00000250495 KIF14Q15058 1648 aa34.29■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms