RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 MTUS2Q5JR59 1369 aa6.3□□□□□ -1.4
VPS13C-201ENST00000249837 KIF27Q86VH2 1401 aa6.3□□□□□ -1.4
VPS13C-201ENST00000249837 ANP32AP39687 249 aaKnown RBP6.3□□□□□ -1.4
VPS13C-201ENST00000249837 KDM2AQ9Y2K7 1162 aa6.3□□□□□ -1.4
VPS13C-201ENST00000249837 KCNH8Q96L42 1107 aa6.3□□□□□ -1.4
VPS13C-201ENST00000249837 TOP2AP11388 1531 aaKnown RBP6.29□□□□□ -1.4
VPS13C-201ENST00000249837 TSHZ2Q9NRE2 1034 aa6.28□□□□□ -1.4
VPS13C-201ENST00000249837 EIF4G2P78344 907 aaKnown RBP eCLIP6.28□□□□□ -1.4
VPS13C-201ENST00000249837 CCDC136Q96JN2 1154 aa6.27□□□□□ -1.41
VPS13C-201ENST00000249837 RAPGEF2Q9Y4G8 1499 aa6.27□□□□□ -1.41
VPS13C-201ENST00000249837 TMC1Q8TDI8 760 aa6.26□□□□□ -1.41
VPS13C-201ENST00000249837 RAB3GAP2Q9H2M9 1393 aa6.25□□□□□ -1.41
VPS13C-201ENST00000249837 B4GALNT3Q6L9W6 998 aa6.25□□□□□ -1.41
VPS13C-201ENST00000249837 SMARCA4P51532 1647 aa6.25□□□□□ -1.41
VPS13C-201ENST00000249837 BCL11AQ9H165 835 aa6.24□□□□□ -1.41
VPS13C-201ENST00000249837 CUX2O14529 1486 aa6.24□□□□□ -1.41
VPS13C-201ENST00000249837 CANXP27824 592 aaKnown RBP6.24□□□□□ -1.41
VPS13C-201ENST00000249837 DHX57Q6P158 1386 aaKnown RBP6.24□□□□□ -1.41
VPS13C-201ENST00000249837 SETD5Q9C0A6 1442 aa6.24□□□□□ -1.41
VPS13C-201ENST00000249837 RBM19Q9Y4C8 960 aaKnown RBP6.23□□□□□ -1.41
VPS13C-201ENST00000249837 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.23□□□□□ -1.415e-7■■■□□ 15.9
VPS13C-201ENST00000249837 ZBTB47Q9UFB7 747 aaPredicted RBP6.23□□□□□ -1.41
VPS13C-201ENST00000249837 CARMIL1Q5VZK9 1371 aa6.23□□□□□ -1.41
VPS13C-201ENST00000249837 PPP4R2Q9NY27 417 aa6.22□□□□□ -1.41
VPS13C-201ENST00000249837 SMARCA2P51531 1590 aa6.22□□□□□ -1.41
VPS13C-201ENST00000249837 CCER2I3L3R5 266 aa6.22□□□□□ -1.41
VPS13C-201ENST00000249837 FOXD1Q16676 465 aa6.22□□□□□ -1.41
VPS13C-201ENST00000249837 PPP1R15AO75807 674 aaPredicted RBP6.19□□□□□ -1.42
VPS13C-201ENST00000249837 HSPA5P11021 654 aaKnown RBP6.19□□□□□ -1.42
VPS13C-201ENST00000249837 FHAD1B1AJZ9 1412 aa6.17□□□□□ -1.42
VPS13C-201ENST00000249837 RGL3Q3MIN7 710 aa6.17□□□□□ -1.42
VPS13C-201ENST00000249837 LAS1LQ9Y4W2 734 aaKnown RBP6.17□□□□□ -1.42
VPS13C-201ENST00000249837 ARHGAP35Q9NRY4 1499 aa6.16□□□□□ -1.42
VPS13C-201ENST00000249837 CHGAP10645 457 aaKnown RBP6.16□□□□□ -1.42
VPS13C-201ENST00000249837 TSPY4P0CV99 314 aa6.16□□□□□ -1.42
VPS13C-201ENST00000249837 TSPY10P0CW01 314 aa6.16□□□□□ -1.42
VPS13C-201ENST00000249837 NOP58Q9Y2X3 529 aaKnown RBP6.15□□□□□ -1.42
VPS13C-201ENST00000249837 SYNJ1O43426 1573 aa6.15□□□□□ -1.42
VPS13C-201ENST00000249837 ATAD2BQ9ULI0 1458 aa6.15□□□□□ -1.42
VPS13C-201ENST00000249837 EIF5BO60841 1220 aaKnown RBP6.15□□□□□ -1.42
VPS13C-201ENST00000249837 EIF4G1Q04637 1599 aaKnown RBP6.15□□□□□ -1.43
VPS13C-201ENST00000249837 CFDP1Q9UEE9 299 aaPredicted RBP6.15□□□□□ -1.43
VPS13C-201ENST00000249837 FHOD3Q2V2M9 1422 aa6.15□□□□□ -1.43
VPS13C-201ENST00000249837 ARXQ96QS3 562 aa6.14□□□□□ -1.43
VPS13C-201ENST00000249837 KIF21BO75037 1637 aa6.14□□□□□ -1.43
VPS13C-201ENST00000249837 WDR43Q15061 677 aaKnown RBP eCLIP6.14□□□□□ -1.43
VPS13C-201ENST00000249837 TIMELESSQ9UNS1 1208 aa6.14□□□□□ -1.43
VPS13C-201ENST00000249837 L3MBTL2Q969R5 705 aa6.13□□□□□ -1.43
VPS13C-201ENST00000249837 SENP3Q9H4L4 574 aaPredicted RBP6.13□□□□□ -1.43
VPS13C-201ENST00000249837 MPHOSPH9Q99550 1183 aa6.13□□□□□ -1.43
VPS13C-201ENST00000249837 CHMP7Q8WUX9 453 aaPredicted RBP6.12□□□□□ -1.43
VPS13C-201ENST00000249837 DEKP35659 375 aaKnown RBP6.12□□□□□ -1.43
VPS13C-201ENST00000249837 RTN4Q9NQC3 1192 aaKnown RBP6.12□□□□□ -1.43
VPS13C-201ENST00000249837 CARD11Q9BXL7 1154 aa6.12□□□□□ -1.43
VPS13C-201ENST00000249837 TDRD9Q8NDG6 1382 aaKnown RBP6.12□□□□□ -1.43
VPS13C-201ENST00000249837 PLEKHD1A6NEE1 506 aa6.11□□□□□ -1.43
VPS13C-201ENST00000249837 CC2D1BQ5T0F9 858 aaKnown RBP6.1□□□□□ -1.43
VPS13C-201ENST00000249837 DCAF11Q8TEB1 546 aa6.1□□□□□ -1.43
VPS13C-201ENST00000249837 RGS3P49796 1198 aa6.1□□□□□ -1.43
VPS13C-201ENST00000249837 PKD2Q13563 968 aa6.09□□□□□ -1.43
VPS13C-201ENST00000249837 NEFMP07197 916 aa6.09□□□□□ -1.43
VPS13C-201ENST00000249837 ARAP1Q96P48 1450 aa6.09□□□□□ -1.43
VPS13C-201ENST00000249837 PHLDB1Q86UU1 1377 aa6.09□□□□□ -1.44
VPS13C-201ENST00000249837 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.08□□□□□ -1.44
VPS13C-201ENST00000249837 DDRGK1Q96HY6 314 aa6.08□□□□□ -1.44
VPS13C-201ENST00000249837 CCDC18Q5T9S5 1454 aa6.08□□□□□ -1.44
VPS13C-201ENST00000249837 IGF1RP08069 1367 aa6.07□□□□□ -1.44
VPS13C-201ENST00000249837 SLC24A1O60721 1099 aa6.07□□□□□ -1.44
VPS13C-201ENST00000249837 UPF2Q9HAU5 1272 aaKnown RBP6.07□□□□□ -1.44
VPS13C-201ENST00000249837 RCAN3Q9UKA8 241 aa6.06□□□□□ -1.44
VPS13C-201ENST00000249837 FMN1Q68DA7 1419 aa6.06□□□□□ -1.44
VPS13C-201ENST00000249837 NUDCQ9Y266 331 aa6.06□□□□□ -1.44
VPS13C-201ENST00000249837 KNSTRNQ9Y448 316 aa6.06□□□□□ -1.44
VPS13C-201ENST00000249837 WDR97A6NE52 1622 aa6.06□□□□□ -1.44
VPS13C-201ENST00000249837 NEUROD2Q15784 382 aa6.06□□□□□ -1.44
VPS13C-201ENST00000249837 TNNT2P45379 298 aaPredicted RBP6.05□□□□□ -1.44
VPS13C-201ENST00000249837 PPM1GO15355 546 aaPredicted RBP6.05□□□□□ -1.44
VPS13C-201ENST00000249837 LRRC9Q6ZRR7 1453 aa6.05□□□□□ -1.44
VPS13C-201ENST00000249837 ERICH6BQ5W0A0 696 aa6.05□□□□□ -1.44
VPS13C-201ENST00000249837 PRKRIP1Q9H875 184 aaPredicted RBP6.04□□□□□ -1.44
VPS13C-201ENST00000249837 NUP155O75694 1391 aa6.04□□□□□ -1.44
VPS13C-201ENST00000249837 HSP90AA1P07900 732 aaKnown RBP6.04□□□□□ -1.44
VPS13C-201ENST00000249837 RAD54L2Q9Y4B4 1467 aa6.03□□□□□ -1.44
VPS13C-201ENST00000249837 CADPSQ9ULU8 1353 aa6.03□□□□□ -1.44
VPS13C-201ENST00000249837 WASHC2AQ641Q2 1341 aa6.03□□□□□ -1.44
VPS13C-201ENST00000249837 FGD5Q6ZNL6 1462 aa6.03□□□□□ -1.44
VPS13C-201ENST00000249837 RRBP1Q9P2E9 1410 aaKnown RBP6.02□□□□□ -1.45
VPS13C-201ENST00000249837 FRAT1Q92837 279 aaPredicted RBP6.02□□□□□ -1.45
VPS13C-201ENST00000249837 BECN1Q14457 450 aa6.02□□□□□ -1.45
VPS13C-201ENST00000249837 IPO9Q96P70 1041 aaKnown RBP6.02□□□□□ -1.45
VPS13C-201ENST00000249837 KTN1Q86UP2 1357 aaKnown RBP6.01□□□□□ -1.45
VPS13C-201ENST00000249837 TCERG1O14776 1098 aaKnown RBP6.01□□□□□ -1.45
VPS13C-201ENST00000249837 ERICH3Q5RHP9 1530 aa6.01□□□□□ -1.45
VPS13C-201ENST00000249837 TOP2BQ02880 1626 aa6.01□□□□□ -1.45
VPS13C-201ENST00000249837 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.01□□□□□ -1.45
VPS13C-201ENST00000249837 CUX1P39880 1505 aa6.01□□□□□ -1.45
VPS13C-201ENST00000249837 EXOC6Q8TAG9 804 aa6□□□□□ -1.45
VPS13C-201ENST00000249837 FANCIQ9NVI1 1328 aa6□□□□□ -1.45
VPS13C-201ENST00000249837 PRXQ9BXM0 1461 aa6□□□□□ -1.45
VPS13C-201ENST00000249837 STAG3Q9UJ98 1225 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms