RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 MAGI1Q96QZ7 1491 aaPredicted RBP20.43■□□□□ 0.86
HIF3A-201ENST00000244302 ARHGAP35Q9NRY4 1499 aa20.42■□□□□ 0.86
HIF3A-201ENST00000244302 GRIN2AQ12879 1464 aa20.41■□□□□ 0.86
HIF3A-201ENST00000244302 SYNJ2O15056 1496 aa20.41■□□□□ 0.86
HIF3A-201ENST00000244302 ARAP1Q96P48 1450 aa20.41■□□□□ 0.86
HIF3A-201ENST00000244302 TTBK1Q5TCY1 1321 aaPredicted RBP20.39■□□□□ 0.85
HIF3A-201ENST00000244302 CTTNBP2Q8WZ74 1663 aa20.33■□□□□ 0.85
HIF3A-201ENST00000244302 CEP170Q5SW79 1584 aa20.32■□□□□ 0.84
HIF3A-201ENST00000244302 FHOD3Q2V2M9 1422 aa20.32■□□□□ 0.84
HIF3A-201ENST00000244302 VPS8Q8N3P4 1428 aa20.29■□□□□ 0.84
HIF3A-201ENST00000244302 KIAA0586Q9BVV6 1533 aa20.27■□□□□ 0.83
HIF3A-201ENST00000244302 NUP160Q12769 1436 aa20.26■□□□□ 0.83
HIF3A-201ENST00000244302 IQGAP2Q13576 1575 aa20.25■□□□□ 0.83
HIF3A-201ENST00000244302 CHD1O14646 1710 aa20.25■□□□□ 0.83
HIF3A-201ENST00000244302 JPH4Q96JJ6 628 aa20.24■□□□□ 0.83
HIF3A-201ENST00000244302 ATP1B4Q9UN42 357 aaPredicted RBP20.23■□□□□ 0.83
HIF3A-201ENST00000244302 SAMD9Q5K651 1589 aa20.17■□□□□ 0.82
HIF3A-201ENST00000244302 KANK4Q5T7N3 995 aaPredicted RBP20.17■□□□□ 0.82
HIF3A-201ENST00000244302 PCGF6Q9BYE7 350 aa20.17■□□□□ 0.82
HIF3A-201ENST00000244302 DISP1Q96F81 1524 aa20.17■□□□□ 0.82
HIF3A-201ENST00000244302 EFCAB5A4FU69 1503 aa20.15■□□□□ 0.82
HIF3A-201ENST00000244302 UGGT2Q9NYU1 1516 aa20.15■□□□□ 0.82
HIF3A-201ENST00000244302 ARID3CA6NKF2 412 aa20.14■□□□□ 0.81
HIF3A-201ENST00000244302 APLP2Q06481 763 aa20.11■□□□□ 0.81
HIF3A-201ENST00000244302 PRG4Q92954 1404 aaPredicted RBP20.07■□□□□ 0.8
HIF3A-201ENST00000244302 PCF11O94913 1555 aaKnown RBP20.07■□□□□ 0.8
HIF3A-201ENST00000244302 KIAA0556O60303 1618 aa20.06■□□□□ 0.8
HIF3A-201ENST00000244302 ERCC6L2Q5T890 1561 aa20.05■□□□□ 0.8
HIF3A-201ENST00000244302 TRIM26Q12899 539 aaPredicted RBP20.04■□□□□ 0.8
HIF3A-201ENST00000244302 FMN1Q68DA7 1419 aa20.03■□□□□ 0.8
HIF3A-201ENST00000244302 OSCARQ8IYS5 282 aa20.02■□□□□ 0.79
HIF3A-201ENST00000244302 CASKIN1Q8WXD9 1431 aa20.01■□□□□ 0.79
HIF3A-201ENST00000244302 CLASP1Q7Z460 1538 aa20■□□□□ 0.79
HIF3A-201ENST00000244302 CARMIL2Q6F5E8 1435 aa19.99■□□□□ 0.79
HIF3A-201ENST00000244302 PLB1Q6P1J6 1458 aa19.97■□□□□ 0.79
HIF3A-201ENST00000244302 FYCO1Q9BQS8 1478 aa19.95■□□□□ 0.78
HIF3A-201ENST00000244302 LRRIQ1Q96JM4 1722 aa19.94■□□□□ 0.78
HIF3A-201ENST00000244302 SHROOM2Q13796 1616 aa19.93■□□□□ 0.78
HIF3A-201ENST00000244302 TIAM1Q13009 1591 aa19.92■□□□□ 0.78
HIF3A-201ENST00000244302 PTPRGP23470 1445 aa19.92■□□□□ 0.78
HIF3A-201ENST00000244302 CDK13Q14004 1512 aaKnown RBP19.9■□□□□ 0.78
HIF3A-201ENST00000244302 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.89■□□□□ 0.77
HIF3A-201ENST00000244302 HNRNPUL2Q1KMD3 747 aaKnown RBP19.89■□□□□ 0.77
HIF3A-201ENST00000244302 LRRC9Q6ZRR7 1453 aa19.88■□□□□ 0.77
HIF3A-201ENST00000244302 NUP153P49790 1475 aaKnown RBP19.88■□□□□ 0.77
HIF3A-201ENST00000244302 HRCP23327 699 aa19.88■□□□□ 0.77
HIF3A-201ENST00000244302 EPRSP07814 1512 aaKnown RBP19.86■□□□□ 0.77
HIF3A-201ENST00000244302 MAGI3Q5TCQ9 1506 aa19.84■□□□□ 0.77
HIF3A-201ENST00000244302 RAPGEF6Q8TEU7 1601 aa19.83■□□□□ 0.77
HIF3A-201ENST00000244302 MAP3K1Q13233 1512 aa19.83■□□□□ 0.76
HIF3A-201ENST00000244302 CFAP43Q8NDM7 1665 aa19.81■□□□□ 0.76
HIF3A-201ENST00000244302 MTUS2Q5JR59 1369 aa19.81■□□□□ 0.76
HIF3A-201ENST00000244302 PHLDB1Q86UU1 1377 aa19.81■□□□□ 0.76
HIF3A-201ENST00000244302 HECW1Q76N89 1606 aa19.81■□□□□ 0.76
HIF3A-201ENST00000244302 ABCA8O94911 1581 aa19.79■□□□□ 0.76
HIF3A-201ENST00000244302 UACAQ9BZF9 1416 aa19.76■□□□□ 0.75
HIF3A-201ENST00000244302 ATP10BO94823 1461 aa19.76■□□□□ 0.75
HIF3A-201ENST00000244302 CCDC18Q5T9S5 1454 aa19.73■□□□□ 0.75
HIF3A-201ENST00000244302 ITGAEP38570 1179 aa19.71■□□□□ 0.75
HIF3A-201ENST00000244302 NCOA2Q15596 1464 aa19.69■□□□□ 0.74
HIF3A-201ENST00000244302 PLEKHD1A6NEE1 506 aa19.66■□□□□ 0.74
HIF3A-201ENST00000244302 FAM50AQ14320 339 aaKnown RBP19.66■□□□□ 0.74
HIF3A-201ENST00000244302 CDK11AQ9UQ88 783 aaPredicted RBP19.65■□□□□ 0.74
HIF3A-201ENST00000244302 CCNB3Q8WWL7 1395 aa19.65■□□□□ 0.74
HIF3A-201ENST00000244302 ABCC2Q92887 1545 aa19.64■□□□□ 0.74
HIF3A-201ENST00000244302 CYB5RLQ6IPT4 315 aa19.64■□□□□ 0.74
HIF3A-201ENST00000244302 RRBP1Q9P2E9 1410 aaKnown RBP19.64■□□□□ 0.74
HIF3A-201ENST00000244302 EHBP1L1Q8N3D4 1523 aa19.64■□□□□ 0.73
HIF3A-201ENST00000244302 ARHGEF11O15085 1522 aa19.63■□□□□ 0.73
HIF3A-201ENST00000244302 KCNH8Q96L42 1107 aa19.63■□□□□ 0.73
HIF3A-201ENST00000244302 TROQ12816 1431 aaPredicted RBP19.61■□□□□ 0.73
HIF3A-201ENST00000244302 ADCY10Q96PN6 1610 aa19.6■□□□□ 0.73
HIF3A-201ENST00000244302 KIF14Q15058 1648 aa19.59■□□□□ 0.73
HIF3A-201ENST00000244302 SUPT6HQ7KZ85 1726 aaKnown RBP19.59■□□□□ 0.73
HIF3A-201ENST00000244302 ZNF644Q9H582 1327 aaPredicted RBP19.58■□□□□ 0.73
HIF3A-201ENST00000244302 FGD6Q6ZV73 1430 aa19.57■□□□□ 0.72
HIF3A-201ENST00000244302 UHRF1BP1LA0JNW5 1464 aa19.56■□□□□ 0.72
HIF3A-201ENST00000244302 MYOM3Q5VTT5 1437 aa19.56■□□□□ 0.72
HIF3A-201ENST00000244302 KDM5BQ9UGL1 1544 aa19.54■□□□□ 0.72
HIF3A-201ENST00000244302 ZCCHC11Q5TAX3 1644 aaKnown RBP19.54■□□□□ 0.72
HIF3A-201ENST00000244302 RIMBP3CA6NJZ7 1639 aa19.53■□□□□ 0.72
HIF3A-201ENST00000244302 RIMBP3BA6NNM3 1639 aa19.53■□□□□ 0.72
HIF3A-201ENST00000244302 RIMBP3Q9UFD9 1639 aa19.53■□□□□ 0.72
HIF3A-201ENST00000244302 ZNF777Q9ULD5 760 aaPredicted RBP19.52■□□□□ 0.72
HIF3A-201ENST00000244302 GPATCH8Q9UKJ3 1502 aaKnown RBP19.49■□□□□ 0.71
HIF3A-201ENST00000244302 PTPRKQ15262 1439 aa19.48■□□□□ 0.71
HIF3A-201ENST00000244302 CFDP1Q9UEE9 299 aaPredicted RBP19.48■□□□□ 0.71
HIF3A-201ENST00000244302 ABCC10Q5T3U5 1492 aa19.48■□□□□ 0.71
HIF3A-201ENST00000244302 CHIC2Q9UKJ5 165 aa19.46■□□□□ 0.71
HIF3A-201ENST00000244302 NPM1P06748 294 aaKnown RBP eCLIP19.45■□□□□ 0.7
HIF3A-201ENST00000244302 PTPN23Q9H3S7 1636 aa19.44■□□□□ 0.7
HIF3A-201ENST00000244302 ASXL2Q76L83 1435 aa19.43■□□□□ 0.7
HIF3A-201ENST00000244302 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.42■□□□□ 0.7
HIF3A-201ENST00000244302 TTC37Q6PGP7 1564 aa19.4■□□□□ 0.7
HIF3A-201ENST00000244302 MIA2Q96PC5 1412 aa19.4■□□□□ 0.7
HIF3A-201ENST00000244302 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.38■□□□□ 0.69
HIF3A-201ENST00000244302 TCOF1Q13428 1488 aaKnown RBP19.38■□□□□ 0.69
HIF3A-201ENST00000244302 WDR7Q9Y4E6 1490 aa19.38■□□□□ 0.69
HIF3A-201ENST00000244302 CDC42BPAQ5VT25 1732 aa19.38■□□□□ 0.69
HIF3A-201ENST00000244302 HNRNPMP52272 730 aaKnown RBP eCLIP19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms