RNA–Protein interactions for RNA: ENST00000230085.12

SNX3-201, Transcript of sorting nexin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-201ENST00000230085 RAPGEF2Q9Y4G8 1499 aa31.83■■■□□ 2.69
SNX3-201ENST00000230085 CEP170Q5SW79 1584 aa31.75■■■□□ 2.67
SNX3-201ENST00000230085 NUP160Q12769 1436 aa31.74■■■□□ 2.67
SNX3-201ENST00000230085 EHMT2Q96KQ7 1210 aa31.69■■■□□ 2.66
SNX3-201ENST00000230085 CLASP1Q7Z460 1538 aa31.65■■■□□ 2.66
SNX3-201ENST00000230085 KIF21BO75037 1637 aa31.65■■■□□ 2.66
SNX3-201ENST00000230085 DNAJC5Q9H3Z4 198 aa31.59■■■□□ 2.65
SNX3-201ENST00000230085 KIAA0586Q9BVV6 1533 aa31.57■■■□□ 2.64
SNX3-201ENST00000230085 GOLGA3Q08378 1498 aa31.52■■■□□ 2.64
SNX3-201ENST00000230085 JPH4Q96JJ6 628 aa31.51■■■□□ 2.63
SNX3-201ENST00000230085 UBTFP17480 764 aaKnown RBP31.49■■■□□ 2.63
SNX3-201ENST00000230085 CTTNBP2Q8WZ74 1663 aa31.47■■■□□ 2.63
SNX3-201ENST00000230085 IQGAP2Q13576 1575 aa31.46■■■□□ 2.63
SNX3-201ENST00000230085 SHROOM2Q13796 1616 aa31.42■■■□□ 2.62
SNX3-201ENST00000230085 SCAF1Q9H7N4 1312 aaKnown RBP31.41■■■□□ 2.62
SNX3-201ENST00000230085 ARHGEF11O15085 1522 aa31.37■■■□□ 2.61
SNX3-201ENST00000230085 PRG4Q92954 1404 aaPredicted RBP31.36■■■□□ 2.61
SNX3-201ENST00000230085 ERCC6L2Q5T890 1561 aa31.34■■■□□ 2.61
SNX3-201ENST00000230085 RANGAP1P46060 587 aaPredicted RBP31.33■■■□□ 2.61
SNX3-201ENST00000230085 RIMBP3CA6NJZ7 1639 aa31.31■■■□□ 2.6
SNX3-201ENST00000230085 RIMBP3BA6NNM3 1639 aa31.31■■■□□ 2.6
SNX3-201ENST00000230085 RIMBP3Q9UFD9 1639 aa31.31■■■□□ 2.6
SNX3-201ENST00000230085 UGGT2Q9NYU1 1516 aa31.29■■■□□ 2.6
SNX3-201ENST00000230085 DISP1Q96F81 1524 aa31.23■■■□□ 2.59
SNX3-201ENST00000230085 TNIKQ9UKE5 1360 aa31.23■■■□□ 2.59
SNX3-201ENST00000230085 CARMIL2Q6F5E8 1435 aa31.21■■■□□ 2.59
SNX3-201ENST00000230085 P3H3Q8IVL6 736 aa31.16■■■□□ 2.58
SNX3-201ENST00000230085 ARAP1Q96P48 1450 aa31.16■■■□□ 2.58
SNX3-201ENST00000230085 KIAA0556O60303 1618 aa31.16■■■□□ 2.58
SNX3-201ENST00000230085 CYB5RLQ6IPT4 315 aa31.14■■■□□ 2.58
SNX3-201ENST00000230085 TTBK1Q5TCY1 1321 aaPredicted RBP31.13■■■□□ 2.57
SNX3-201ENST00000230085 CEP162Q5TB80 1403 aa31.11■■■□□ 2.57
SNX3-201ENST00000230085 SAMD9Q5K651 1589 aa31.1■■■□□ 2.57
SNX3-201ENST00000230085 ACIN1Q9UKV3 1341 aaKnown RBP31.09■■■□□ 2.57
SNX3-201ENST00000230085 CCER1Q8TC90 406 aaPredicted RBP31.07■■■□□ 2.56
SNX3-201ENST00000230085 PTPRGP23470 1445 aa31.05■■■□□ 2.56
SNX3-201ENST00000230085 ARHGAP35Q9NRY4 1499 aa31.03■■■□□ 2.56
SNX3-201ENST00000230085 EFCAB5A4FU69 1503 aa31.02■■■□□ 2.56
SNX3-201ENST00000230085 FHOD3Q2V2M9 1422 aa31■■■□□ 2.55
SNX3-201ENST00000230085 CLIP1P30622 1438 aa31■■■□□ 2.55
SNX3-201ENST00000230085 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31■■■□□ 2.55
SNX3-201ENST00000230085 DIEXFQ68CQ4 756 aaKnown RBP30.87■■■□□ 2.53
SNX3-201ENST00000230085 CENPBP07199 599 aaPredicted RBP30.87■■■□□ 2.53
SNX3-201ENST00000230085 PLB1Q6P1J6 1458 aa30.87■■■□□ 2.53
SNX3-201ENST00000230085 UACAQ9BZF9 1416 aa30.84■■■□□ 2.53
SNX3-201ENST00000230085 NEUROD1Q13562 356 aa30.82■■■□□ 2.52
SNX3-201ENST00000230085 ADCY10Q96PN6 1610 aa30.81■■■□□ 2.52
SNX3-201ENST00000230085 ABCA8O94911 1581 aa30.78■■■□□ 2.52
SNX3-201ENST00000230085 FMN1Q68DA7 1419 aa30.77■■■□□ 2.52
SNX3-201ENST00000230085 ABCC2Q92887 1545 aa30.75■■■□□ 2.51
SNX3-201ENST00000230085 UHRF1BP1LA0JNW5 1464 aa30.74■■■□□ 2.51
SNX3-201ENST00000230085 RAPGEF6Q8TEU7 1601 aa30.72■■■□□ 2.51
SNX3-201ENST00000230085 ARID3CA6NKF2 412 aa30.69■■■□□ 2.5
SNX3-201ENST00000230085 NPM1P06748 294 aaKnown RBP eCLIP30.67■■■□□ 2.5
SNX3-201ENST00000230085 ATP1B4Q9UN42 357 aaPredicted RBP30.67■■■□□ 2.5
SNX3-201ENST00000230085 NUP153P49790 1475 aaKnown RBP30.64■■■□□ 2.49
SNX3-201ENST00000230085 KDM5BQ9UGL1 1544 aa30.62■■■□□ 2.49
SNX3-201ENST00000230085 ZNF316A6NFI3 1004 aaPredicted RBP30.62■■■□□ 2.49
SNX3-201ENST00000230085 MYT1Q01538 1121 aa30.62■■■□□ 2.49
SNX3-201ENST00000230085 PCF11O94913 1555 aaKnown RBP30.6■■■□□ 2.49
SNX3-201ENST00000230085 CASKIN1Q8WXD9 1431 aa30.59■■■□□ 2.49
SNX3-201ENST00000230085 ATP10BO94823 1461 aa30.58■■■□□ 2.49
SNX3-201ENST00000230085 ZCCHC11Q5TAX3 1644 aaKnown RBP30.57■■■□□ 2.48
SNX3-201ENST00000230085 VPS8Q8N3P4 1428 aa30.56■■■□□ 2.48
SNX3-201ENST00000230085 HECW1Q76N89 1606 aa30.55■■■□□ 2.48
SNX3-201ENST00000230085 HNRNPUL2Q1KMD3 747 aaKnown RBP30.54■■■□□ 2.48
SNX3-201ENST00000230085 GTF3C3Q9Y5Q9 886 aa30.54■■■□□ 2.48
SNX3-201ENST00000230085 FYCO1Q9BQS8 1478 aa30.53■■■□□ 2.48
SNX3-201ENST00000230085 EPRSP07814 1512 aaKnown RBP30.5■■■□□ 2.47
SNX3-201ENST00000230085 LRRIQ1Q96JM4 1722 aa30.49■■■□□ 2.47
SNX3-201ENST00000230085 CDK13Q14004 1512 aaKnown RBP30.49■■■□□ 2.47
SNX3-201ENST00000230085 MAPKBP1O60336 1514 aa30.47■■■□□ 2.47
SNX3-201ENST00000230085 ASXL2Q76L83 1435 aa30.46■■■□□ 2.47
SNX3-201ENST00000230085 CCDC18Q5T9S5 1454 aa30.39■■■□□ 2.46
SNX3-201ENST00000230085 PLEKHD1A6NEE1 506 aa30.37■■■□□ 2.45
SNX3-201ENST00000230085 WDR7Q9Y4E6 1490 aa30.36■■■□□ 2.45
SNX3-201ENST00000230085 KCNH8Q96L42 1107 aa30.35■■■□□ 2.45
SNX3-201ENST00000230085 CLSPNQ9HAW4 1339 aa30.34■■■□□ 2.45
SNX3-201ENST00000230085 TRHP20396 242 aaPredicted RBP30.33■■■□□ 2.45
SNX3-201ENST00000230085 CDK11AQ9UQ88 783 aaPredicted RBP30.33■■■□□ 2.45
SNX3-201ENST00000230085 ABCC10Q5T3U5 1492 aa30.3■■■□□ 2.44
SNX3-201ENST00000230085 FAM69CQ0P6D2 419 aa30.28■■■□□ 2.44
SNX3-201ENST00000230085 MAGI3Q5TCQ9 1506 aa30.26■■■□□ 2.43
SNX3-201ENST00000230085 DIP2BQ9P265 1576 aa30.25■■■□□ 2.43
SNX3-201ENST00000230085 APLP2Q06481 763 aa30.23■■■□□ 2.43
SNX3-201ENST00000230085 TIAM1Q13009 1591 aa30.23■■■□□ 2.43
SNX3-201ENST00000230085 KIF13AQ9H1H9 1805 aa30.23■■■□□ 2.43
SNX3-201ENST00000230085 TROQ12816 1431 aaPredicted RBP30.22■■■□□ 2.43
SNX3-201ENST00000230085 CFAP43Q8NDM7 1665 aa30.21■■■□□ 2.43
SNX3-201ENST00000230085 MTUS2Q5JR59 1369 aa30.19■■■□□ 2.42
SNX3-201ENST00000230085 MAP3K1Q13233 1512 aa30.18■■■□□ 2.42
SNX3-201ENST00000230085 KANK4Q5T7N3 995 aaPredicted RBP30.18■■■□□ 2.42
SNX3-201ENST00000230085 GLI2P10070 1586 aa30.16■■■□□ 2.42
SNX3-201ENST00000230085 KIF14Q15058 1648 aa30.13■■■□□ 2.41
SNX3-201ENST00000230085 LRRC9Q6ZRR7 1453 aa30.12■■■□□ 2.41
SNX3-201ENST00000230085 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.11■■■□□ 2.418e-7■□□□□ 8.5
SNX3-201ENST00000230085 EHBP1L1Q8N3D4 1523 aa30.09■■■□□ 2.41
SNX3-201ENST00000230085 ABCA9Q8IUA7 1624 aa30.08■■■□□ 2.41
SNX3-201ENST00000230085 MAP3K4Q9Y6R4 1608 aa30.06■■■□□ 2.4
SNX3-201ENST00000230085 MIER1Q8N108 512 aa30.06■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms