RNA–Protein interactions for RNA: ENSMUST00000110301.1

Clcn3-204, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,099 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-204ENSMUST00000110301 Ccer2J3QPU5 274 aa18.9■□□□□ 0.62
Clcn3-204ENSMUST00000110301 Dnajc5bQ9CQ94 199 aa18.89■□□□□ 0.61
Clcn3-204ENSMUST00000110301 Stra8P70278 393 aa18.88■□□□□ 0.61
Clcn3-204ENSMUST00000110301 Rpap1Q80TE0 1409 aa18.87■□□□□ 0.61
Clcn3-204ENSMUST00000110301 Aebp2Q9Z248 504 aaKnown RBP18.85■□□□□ 0.61
Clcn3-204ENSMUST00000110301 Plppr3Q7TPB0 716 aa18.84■□□□□ 0.61
Clcn3-204ENSMUST00000110301 Kif27Q7M6Z4 1394 aa18.84■□□□□ 0.61
Clcn3-204ENSMUST00000110301 Carmil1Q6EDY6 1374 aa18.82■□□□□ 0.6
Clcn3-204ENSMUST00000110301 NrdcQ8BHG1 1161 aa18.82■□□□□ 0.6
Clcn3-204ENSMUST00000110301 Top2aQ01320 1528 aaKnown RBP18.81■□□□□ 0.6
Clcn3-204ENSMUST00000110301 Wdr62Q3U3T8 1523 aa18.79■□□□□ 0.6
Clcn3-204ENSMUST00000110301 CenpbP27790 599 aa18.77■□□□□ 0.6
Clcn3-204ENSMUST00000110301 AknaQ80VW7 1404 aa18.76■□□□□ 0.59
Clcn3-204ENSMUST00000110301 PtprkP35822 1457 aa18.76■□□□□ 0.59
Clcn3-204ENSMUST00000110301 Top2bQ64511 1612 aa18.75■□□□□ 0.59
Clcn3-204ENSMUST00000110301 Ttbk1Q6PCN3 1308 aa18.75■□□□□ 0.59
Clcn3-204ENSMUST00000110301 Gm13697A2AK42 830 aa18.72■□□□□ 0.59
Clcn3-204ENSMUST00000110301 Eif5bQ05D44 1216 aaKnown RBP18.72■□□□□ 0.59
Clcn3-204ENSMUST00000110301 Shroom4Q1W617 1475 aa18.72■□□□□ 0.59
Clcn3-204ENSMUST00000110301 Rad54l2Q99NG0 1466 aa18.71■□□□□ 0.59
Clcn3-204ENSMUST00000110301 Efcab5A0JP43 1406 aa18.7■□□□□ 0.58
Clcn3-204ENSMUST00000110301 Anp32bQ9EST5 272 aaKnown RBP18.7■□□□□ 0.58
Clcn3-204ENSMUST00000110301 CntlnA2AM05 1397 aa18.69■□□□□ 0.58
Clcn3-204ENSMUST00000110301 Duox2A2AQ99 1517 aa18.68■□□□□ 0.58
Clcn3-204ENSMUST00000110301 Rgl3Q3UYI5 709 aa18.66■□□□□ 0.58
Clcn3-204ENSMUST00000110301 Arhgap35Q91YM2 1499 aa18.66■□□□□ 0.58
Clcn3-204ENSMUST00000110301 Prdm10Q3UTQ7 1184 aa18.65■□□□□ 0.58
Clcn3-204ENSMUST00000110301 Atp1b4Q99ME6 356 aa18.65■□□□□ 0.58
Clcn3-204ENSMUST00000110301 Rrp7aQ9D1C9 280 aaKnown RBP18.65■□□□□ 0.58
Clcn3-204ENSMUST00000110301 Myt1Q8CFC2 1127 aa18.64■□□□□ 0.57
Clcn3-204ENSMUST00000110301 Hspa5P20029 655 aaKnown RBP18.64■□□□□ 0.57
Clcn3-204ENSMUST00000110301 Arid3cA6PWV5 409 aa18.64■□□□□ 0.57
Clcn3-204ENSMUST00000110301 Cabp1Q9JLK7 227 aa18.63■□□□□ 0.57
Clcn3-204ENSMUST00000110301 Mtus2Q3UHD3 1353 aa18.63■□□□□ 0.57
Clcn3-204ENSMUST00000110301 Grin2bQ01097 1482 aa18.62■□□□□ 0.57
Clcn3-204ENSMUST00000110301 NrkQ9R0G8 1455 aa18.6■□□□□ 0.57
Clcn3-204ENSMUST00000110301 PogzQ8BZH4 1409 aaKnown RBP18.6■□□□□ 0.57
Clcn3-204ENSMUST00000110301 Fyco1Q8VDC1 1437 aa18.59■□□□□ 0.57
Clcn3-204ENSMUST00000110301 Clstn2Q9ER65 966 aa18.59■□□□□ 0.57
Clcn3-204ENSMUST00000110301 Urb2E9Q7L1 1524 aaKnown RBP18.58■□□□□ 0.57
Clcn3-204ENSMUST00000110301 Mrc2Q64449 1479 aa18.58■□□□□ 0.56
Clcn3-204ENSMUST00000110301 WrnO09053 1401 aa18.57■□□□□ 0.56
Clcn3-204ENSMUST00000110301 Grwd1Q810D6 446 aaKnown RBP18.55■□□□□ 0.56
Clcn3-204ENSMUST00000110301 Mia2Q91ZV0 1396 aa18.55■□□□□ 0.56
Clcn3-204ENSMUST00000110301 Camsap1A2AHC3 1581 aa18.53■□□□□ 0.56
Clcn3-204ENSMUST00000110301 Bcl11aQ9QYE3 773 aa18.53■□□□□ 0.56
Clcn3-204ENSMUST00000110301 Ccnb3Q810T2 1396 aa18.52■□□□□ 0.56
Clcn3-204ENSMUST00000110301 Lamc3Q9R0B6 1581 aa18.5■□□□□ 0.55
Clcn3-204ENSMUST00000110301 Mroh2bQ7M6Y6 1581 aa18.48■□□□□ 0.55
Clcn3-204ENSMUST00000110301 Plb1Q3TTY0 1478 aa18.46■□□□□ 0.55
Clcn3-204ENSMUST00000110301 Arap1Q4LDD4 1452 aa18.44■□□□□ 0.54
Clcn3-204ENSMUST00000110301 Pkd2O35245 966 aa18.44■□□□□ 0.54
Clcn3-204ENSMUST00000110301 Gm13695A2AK44 830 aa18.43■□□□□ 0.54
Clcn3-204ENSMUST00000110301 Tnnt3Q9QZ47 272 aa18.42■□□□□ 0.54
Clcn3-204ENSMUST00000110301 Kdm2aP59997 1161 aa18.42■□□□□ 0.54
Clcn3-204ENSMUST00000110301 Map4P27546 1125 aaKnown RBP18.41■□□□□ 0.54
Clcn3-204ENSMUST00000110301 Trak1Q6PD31 939 aa18.41■□□□□ 0.54
Clcn3-204ENSMUST00000110301 Mphosph9A6H5Y1 991 aa18.41■□□□□ 0.54
Clcn3-204ENSMUST00000110301 Jph4Q80WT0 628 aa18.41■□□□□ 0.54
Clcn3-204ENSMUST00000110301 Hdac5Q9Z2V6 1113 aa18.4■□□□□ 0.54
Clcn3-204ENSMUST00000110301 Naip1Q9QWK5 1403 aa18.39■□□□□ 0.53
Clcn3-204ENSMUST00000110301 Mroh3A0A1D5RM54 893 aa18.37■□□□□ 0.53
Clcn3-204ENSMUST00000110301 Mrs2Q5NCE8 434 aa18.36■□□□□ 0.53
Clcn3-204ENSMUST00000110301 Map3k1P53349 1493 aa18.35■□□□□ 0.53
Clcn3-204ENSMUST00000110301 Sin3aQ60520 1274 aaKnown RBP18.35■□□□□ 0.53
Clcn3-204ENSMUST00000110301 Ppp1r18Q8BQ30 594 aa18.33■□□□□ 0.52
Clcn3-204ENSMUST00000110301 Stk24Q99KH8 431 aa18.32■□□□□ 0.52
Clcn3-204ENSMUST00000110301 Sart1Q9Z315 806 aaKnown RBP18.32■□□□□ 0.52
Clcn3-204ENSMUST00000110301 P3h3Q8CG70 732 aa18.31■□□□□ 0.52
Clcn3-204ENSMUST00000110301 Gm7298A0A0N4SVU1 1476 aa18.3■□□□□ 0.52
Clcn3-204ENSMUST00000110301 Card11Q8CIS0 1159 aa18.3■□□□□ 0.52
Clcn3-204ENSMUST00000110301 EprsQ8CGC7 1512 aaKnown RBP18.3■□□□□ 0.52
Clcn3-204ENSMUST00000110301 Soga1E1U8D0 1418 aa18.29■□□□□ 0.52
Clcn3-204ENSMUST00000110301 Tdrd9Q14BI7 1383 aa18.29■□□□□ 0.52
Clcn3-204ENSMUST00000110301 CadpsQ80TJ1 1355 aa18.29■□□□□ 0.52
Clcn3-204ENSMUST00000110301 Safb2Q80YR5 991 aaKnown RBP18.28■□□□□ 0.52
Clcn3-204ENSMUST00000110301 Dhx57Q6P5D3 1388 aaKnown RBP18.28■□□□□ 0.52
Clcn3-204ENSMUST00000110301 Nlrp6Q91WS2 869 aa18.27■□□□□ 0.52
Clcn3-204ENSMUST00000110301 Lemd3Q9WU40 921 aa18.27■□□□□ 0.52
Clcn3-204ENSMUST00000110301 Gm38655A0A286YDK6 273 aa18.27■□□□□ 0.51
Clcn3-204ENSMUST00000110301 Plekhh2Q8C115 1491 aa18.26■□□□□ 0.51
Clcn3-204ENSMUST00000110301 Csrnp3P59055 597 aa18.25■□□□□ 0.51
Clcn3-204ENSMUST00000110301 Crocc2F6XLV1 1638 aa18.25■□□□□ 0.51
Clcn3-204ENSMUST00000110301 Arhgef5E9Q7D5 1581 aa18.25■□□□□ 0.51
Clcn3-204ENSMUST00000110301 Pabpn1Q8CCS6 302 aaKnown RBP18.24■□□□□ 0.51
Clcn3-204ENSMUST00000110301 Cc2d2bA0A286YDU8 1405 aa18.24■□□□□ 0.51
Clcn3-204ENSMUST00000110301 Polr1aO35134 1717 aaKnown RBP18.24■□□□□ 0.51
Clcn3-204ENSMUST00000110301 PrkcshO08795 521 aa18.22■□□□□ 0.51
Clcn3-204ENSMUST00000110301 Arhgap31A6X8Z5 1425 aa18.21■□□□□ 0.51
Clcn3-204ENSMUST00000110301 NeflP08551 543 aa18.2■□□□□ 0.5
Clcn3-204ENSMUST00000110301 Zfp644E9QA22 1323 aa18.2■□□□□ 0.5
Clcn3-204ENSMUST00000110301 Kif3bQ61771 747 aa18.2■□□□□ 0.5
Clcn3-204ENSMUST00000110301 Anks4bQ8K3X6 423 aa18.2■□□□□ 0.5
Clcn3-204ENSMUST00000110301 Gm20521D3Z5F7 333 aa18.19■□□□□ 0.5
Clcn3-204ENSMUST00000110301 Nup155Q99P88 1391 aaKnown RBP18.19■□□□□ 0.5
Clcn3-204ENSMUST00000110301 Ift140E9PY46 1464 aa18.19■□□□□ 0.5
Clcn3-204ENSMUST00000110301 SynmQ70IV5 1561 aa18.18■□□□□ 0.5
Clcn3-204ENSMUST00000110301 Cux1P53564 1515 aa18.18■□□□□ 0.5
Clcn3-204ENSMUST00000110301 AqrQ8CFQ3 1481 aaKnown RBP18.17■□□□□ 0.5
Clcn3-204ENSMUST00000110301 Rundc1Q0VDN7 615 aa18.17■□□□□ 0.5
Retrieved 100 of 22,080 RNA–protein pairs in 117.7 ms