RNA–Protein interactions for RNA: ENSMUST00000056508.11

Clcn3-202, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS P4 TSL 1 (best) BASIC

Gene Clcn3, Length 5,684 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-202ENSMUST00000056508 Dmrt2Q8BG36 561 aa12.6□□□□□ -0.39
Clcn3-202ENSMUST00000056508 Sparcl1P70663 650 aa12.57□□□□□ -0.4
Clcn3-202ENSMUST00000056508 MyclP10166 368 aa12.57□□□□□ -0.4
Clcn3-202ENSMUST00000056508 Atp1b4Q99ME6 356 aa12.57□□□□□ -0.4
Clcn3-202ENSMUST00000056508 Tmem132aQ922P8 1018 aa12.56□□□□□ -0.4
Clcn3-202ENSMUST00000056508 Irx6Q9ER75 438 aa12.54□□□□□ -0.4
Clcn3-202ENSMUST00000056508 Nop58Q6DFW4 536 aaKnown RBP12.53□□□□□ -0.4
Clcn3-202ENSMUST00000056508 Skida1Q80YR3 822 aa12.51□□□□□ -0.41
Clcn3-202ENSMUST00000056508 Ciz1Q8VEH2 845 aa12.5□□□□□ -0.41
Clcn3-202ENSMUST00000056508 Gtf3c6Q9D8P7 227 aa12.5□□□□□ -0.41
Clcn3-202ENSMUST00000056508 Nap1l5Q9JJF0 156 aa12.5□□□□□ -0.41
Clcn3-202ENSMUST00000056508 Apbb1Q9QXJ1 710 aa12.5□□□□□ -0.41
Clcn3-202ENSMUST00000056508 Styxl1Q9DAR2 321 aa12.44□□□□□ -0.42
Clcn3-202ENSMUST00000056508 Noc3lQ8VI84 807 aaKnown RBP12.44□□□□□ -0.42
Clcn3-202ENSMUST00000056508 Trim26Q99PN3 545 aa12.44□□□□□ -0.42
Clcn3-202ENSMUST00000056508 SafbD3YXK2 937 aaKnown RBP12.44□□□□□ -0.42
Clcn3-202ENSMUST00000056508 Gpatch11Q3UFS4 262 aa12.42□□□□□ -0.42
Clcn3-202ENSMUST00000056508 Fam50aQ9WV03 339 aaKnown RBP12.42□□□□□ -0.42
Clcn3-202ENSMUST00000056508 Safb2Q80YR5 991 aaKnown RBP12.38□□□□□ -0.43
Clcn3-202ENSMUST00000056508 Hdac6Q9Z2V5 1149 aa12.38□□□□□ -0.43
Clcn3-202ENSMUST00000056508 Stra8P70278 393 aa12.36□□□□□ -0.43
Clcn3-202ENSMUST00000056508 Hdac5Q9Z2V6 1113 aa12.36□□□□□ -0.43
Clcn3-202ENSMUST00000056508 Erich6D3Z6S9 713 aa12.35□□□□□ -0.43
Clcn3-202ENSMUST00000056508 Hsp90aa1P07901 733 aaKnown RBP12.35□□□□□ -0.43
Clcn3-202ENSMUST00000056508 Pde4cQ3UEI1 686 aa12.35□□□□□ -0.43
Clcn3-202ENSMUST00000056508 Aebp1Q640N1 1128 aa12.34□□□□□ -0.43
Clcn3-202ENSMUST00000056508 Brd2Q7JJ13 798 aaKnown RBP12.34□□□□□ -0.43
Clcn3-202ENSMUST00000056508 4933402E13RikQ9D4D2 429 aa12.34□□□□□ -0.43
Clcn3-202ENSMUST00000056508 Gm38655A0A286YDK6 273 aa12.31□□□□□ -0.44
Clcn3-202ENSMUST00000056508 Ube2q2Q8K2Z8 378 aa12.3□□□□□ -0.44
Clcn3-202ENSMUST00000056508 BcanQ61361 883 aa12.29□□□□□ -0.44
Clcn3-202ENSMUST00000056508 Trim41Q5NCC3 630 aa12.28□□□□□ -0.44
Clcn3-202ENSMUST00000056508 Znf526Q8BI66 675 aa12.28□□□□□ -0.44
Clcn3-202ENSMUST00000056508 Cnksr2Q80YA9 1032 aa12.26□□□□□ -0.45
Clcn3-202ENSMUST00000056508 Ppm1fQ8CGA0 452 aa12.25□□□□□ -0.45
Clcn3-202ENSMUST00000056508 B4galnt3Q6L8S8 986 aa12.22□□□□□ -0.45
Clcn3-202ENSMUST00000056508 BbxQ8VBW5 907 aa12.22□□□□□ -0.45
Clcn3-202ENSMUST00000056508 AppP12023 770 aa12.2□□□□□ -0.46
Clcn3-202ENSMUST00000056508 Mak16Q8BGS0 296 aaKnown RBP12.2□□□□□ -0.46
Clcn3-202ENSMUST00000056508 Rsph4aQ8BYM7 716 aa12.19□□□□□ -0.46
Clcn3-202ENSMUST00000056508 Ggt6Q6PDE7 497 aa12.18□□□□□ -0.46
Clcn3-202ENSMUST00000056508 Cdca7Q9D0M2 382 aa12.18□□□□□ -0.46
Clcn3-202ENSMUST00000056508 Cers3Q1A3B0 383 aa12.14□□□□□ -0.47
Clcn3-202ENSMUST00000056508 P3h3Q8CG70 732 aa12.12□□□□□ -0.47
Clcn3-202ENSMUST00000056508 CanxP35564 591 aaKnown RBP12.11□□□□□ -0.47
Clcn3-202ENSMUST00000056508 NrdcQ8BHG1 1161 aa12.11□□□□□ -0.47
Clcn3-202ENSMUST00000056508 ErmnQ5EBJ4 281 aa12.09□□□□□ -0.47
Clcn3-202ENSMUST00000056508 Samd1D3YXK1 519 aa12.07□□□□□ -0.48
Clcn3-202ENSMUST00000056508 Arid4aF8VPQ2 1261 aaKnown RBP12.06□□□□□ -0.48
Clcn3-202ENSMUST00000056508 PtmsQ9D0J8 101 aaKnown RBP12.05□□□□□ -0.48
Clcn3-202ENSMUST00000056508 Rsph6aQ8CDR2 708 aa12.04□□□□□ -0.48
Clcn3-202ENSMUST00000056508 Ccdc136Q3TVA9 1136 aa12.03□□□□□ -0.48
Clcn3-202ENSMUST00000056508 Znf622Q91VY9 476 aa12.02□□□□□ -0.48
Clcn3-202ENSMUST00000056508 Trim44Q9QXA7 346 aa12.02□□□□□ -0.49
Clcn3-202ENSMUST00000056508 Npm1Q61937 292 aaKnown RBP12.02□□□□□ -0.49
Clcn3-202ENSMUST00000056508 Pcgf6Q99NA9 353 aa12.02□□□□□ -0.49
Clcn3-202ENSMUST00000056508 DekQ7TNV0 380 aaKnown RBP12□□□□□ -0.49
Clcn3-202ENSMUST00000056508 ChgaP26339 463 aaKnown RBP12□□□□□ -0.49
Clcn3-202ENSMUST00000056508 Ccdc9Q8VC31 543 aaKnown RBP12□□□□□ -0.49
Clcn3-202ENSMUST00000056508 Paf1Q8K2T8 535 aa11.99□□□□□ -0.49
Clcn3-202ENSMUST00000056508 Ppm1gQ61074 542 aa11.98□□□□□ -0.49
Clcn3-202ENSMUST00000056508 VaspP70460 375 aaKnown RBP11.96□□□□□ -0.49
Clcn3-202ENSMUST00000056508 Ccdc85aQ5SP85 500 aa11.96□□□□□ -0.5
Clcn3-202ENSMUST00000056508 MccE9PWI3 1003 aa11.95□□□□□ -0.5
Clcn3-202ENSMUST00000056508 Cnga1P29974 684 aa11.95□□□□□ -0.5
Clcn3-202ENSMUST00000056508 Slc24a3Q99PD7 645 aa11.95□□□□□ -0.5
Clcn3-202ENSMUST00000056508 Wwc1Q5SXA9 1104 aa11.94□□□□□ -0.5
Clcn3-202ENSMUST00000056508 Hs6st3Q9QYK4 470 aa11.92□□□□□ -0.5
Clcn3-202ENSMUST00000056508 Ifnlr1Q8CGK5 535 aa11.91□□□□□ -0.5
Clcn3-202ENSMUST00000056508 Stk3Q9JI10 497 aa11.91□□□□□ -0.5
Clcn3-202ENSMUST00000056508 Spock2Q9ER58 423 aa11.91□□□□□ -0.5
Clcn3-202ENSMUST00000056508 Mfap1aC0HKD8 439 aaKnown RBP11.91□□□□□ -0.5
Clcn3-202ENSMUST00000056508 Mfap1bC0HKD9 439 aaKnown RBP11.91□□□□□ -0.5
Clcn3-202ENSMUST00000056508 Plagl1Q9JLQ4 704 aa11.91□□□□□ -0.5
Clcn3-202ENSMUST00000056508 NeflP08551 543 aa11.9□□□□□ -0.5
Clcn3-202ENSMUST00000056508 FosbP13346 338 aa11.89□□□□□ -0.51
Clcn3-202ENSMUST00000056508 Zbtb4Q5F293 982 aa11.89□□□□□ -0.51
Clcn3-202ENSMUST00000056508 Trim30cD3YVI9 513 aa11.87□□□□□ -0.51
Clcn3-202ENSMUST00000056508 Mier1Q5UAK0 511 aa11.87□□□□□ -0.51
Clcn3-202ENSMUST00000056508 Chrna2Q91X60 512 aa11.87□□□□□ -0.51
Clcn3-202ENSMUST00000056508 Slc7a3P70423 618 aa11.87□□□□□ -0.51
Clcn3-202ENSMUST00000056508 Tomm22Q9CPQ3 142 aa11.87□□□□□ -0.51
Clcn3-202ENSMUST00000056508 Ap3b1Q9Z1T1 1105 aa11.86□□□□□ -0.51
Clcn3-202ENSMUST00000056508 SetQ9EQU5 289 aaKnown RBP11.86□□□□□ -0.51
Clcn3-202ENSMUST00000056508 Zbtb38Q3LR78 1197 aa11.85□□□□□ -0.51
Clcn3-202ENSMUST00000056508 Anp32aO35381 247 aa11.85□□□□□ -0.51
Clcn3-202ENSMUST00000056508 Hap1O35668 628 aa11.84□□□□□ -0.51
Clcn3-202ENSMUST00000056508 Zfp91Q62511 572 aa11.84□□□□□ -0.51
Clcn3-202ENSMUST00000056508 Pcmtd1P59913 357 aa11.83□□□□□ -0.52
Clcn3-202ENSMUST00000056508 Pes1Q9EQ61 584 aaKnown RBP11.83□□□□□ -0.52
Clcn3-202ENSMUST00000056508 Kdm2aP59997 1161 aa11.83□□□□□ -0.52
Clcn3-202ENSMUST00000056508 Zrsr2Q62377 462 aaKnown RBP11.83□□□□□ -0.52
Clcn3-202ENSMUST00000056508 MpndQ3TV65 487 aa11.81□□□□□ -0.52
Clcn3-202ENSMUST00000056508 Tmco4Q91WU4 631 aa11.8□□□□□ -0.52
Clcn3-202ENSMUST00000056508 Tnnt2P50752 301 aa11.79□□□□□ -0.52
Clcn3-202ENSMUST00000056508 Hdgfl1Q2VPR5 283 aa11.77□□□□□ -0.52
Clcn3-202ENSMUST00000056508 Znf704Q9ERQ3 566 aa11.77□□□□□ -0.52
Clcn3-202ENSMUST00000056508 Fkbp15Q6P9Q6 1216 aaKnown RBP11.77□□□□□ -0.52
Clcn3-202ENSMUST00000056508 Igsf3Q6ZQA6 1194 aa11.77□□□□□ -0.52
Clcn3-202ENSMUST00000056508 Nbr1P97432 988 aa11.77□□□□□ -0.53
Retrieved 100 of 22,080 RNA–protein pairs in 18.1 ms