RNA–Protein interactions for RNA: ENSMUST00000035283.10

Nup88-201, Transcript of Nuclear pore complex protein Nup88, mousemouse

TSL 1 (best) BASIC

Gene Nup88, Length 2,450 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-201ENSMUST00000035283 Naip1Q9QWK5 1403 aa19.15■□□□□ 0.66
Nup88-201ENSMUST00000035283 NclP09405 707 aaKnown RBP19.14■□□□□ 0.65
Nup88-201ENSMUST00000035283 Fam50aQ9WV03 339 aaKnown RBP19.14■□□□□ 0.65
Nup88-201ENSMUST00000035283 Znf710Q3U288 666 aa19.13■□□□□ 0.65
Nup88-201ENSMUST00000035283 Map3k1P53349 1493 aa19.11■□□□□ 0.65
Nup88-201ENSMUST00000035283 Kif15Q6P9L6 1387 aa19.08■□□□□ 0.65
Nup88-201ENSMUST00000035283 Lamc3Q9R0B6 1581 aa19.07■□□□□ 0.64
Nup88-201ENSMUST00000035283 Frmpd1A2AKB4 1549 aa19.07■□□□□ 0.64
Nup88-201ENSMUST00000035283 Camsap1A2AHC3 1581 aa19.05■□□□□ 0.64
Nup88-201ENSMUST00000035283 Lmod2Q3UHZ5 550 aa19.05■□□□□ 0.64
Nup88-201ENSMUST00000035283 Slx4Q6P1D7 1565 aa19.04■□□□□ 0.64
Nup88-201ENSMUST00000035283 Ankrd26Q811D2 1581 aa19.03■□□□□ 0.64
Nup88-201ENSMUST00000035283 Hspa5P20029 655 aaKnown RBP19.02■□□□□ 0.64
Nup88-201ENSMUST00000035283 Mroh2bQ7M6Y6 1581 aa19.01■□□□□ 0.63
Nup88-201ENSMUST00000035283 Pds5bQ4VA53 1446 aaKnown RBP19.01■□□□□ 0.63
Nup88-201ENSMUST00000035283 Pcf11G3X9Z4 1553 aa19■□□□□ 0.63
Nup88-201ENSMUST00000035283 Erich3F6QRE9 1637 aa18.99■□□□□ 0.63
Nup88-201ENSMUST00000035283 Wdr62Q3U3T8 1523 aa18.99■□□□□ 0.63
Nup88-201ENSMUST00000035283 3425401B19RikD3Z1D3 1412 aa18.98■□□□□ 0.63
Nup88-201ENSMUST00000035283 Stra8P70278 393 aa18.97■□□□□ 0.63
Nup88-201ENSMUST00000035283 UacaQ8CGB3 1411 aa18.97■□□□□ 0.63
Nup88-201ENSMUST00000035283 Grin2bQ01097 1482 aa18.96■□□□□ 0.63
Nup88-201ENSMUST00000035283 Gm13697A2AK42 830 aa18.93■□□□□ 0.62
Nup88-201ENSMUST00000035283 Anp32aO35381 247 aa18.91■□□□□ 0.62
Nup88-201ENSMUST00000035283 Dhx29Q6PGC1 1365 aaKnown RBP18.9■□□□□ 0.62
Nup88-201ENSMUST00000035283 Sin3aQ60520 1274 aaKnown RBP18.87■□□□□ 0.61
Nup88-201ENSMUST00000035283 Fhad1A6PWD2 1420 aa18.87■□□□□ 0.61
Nup88-201ENSMUST00000035283 Ankrd36D3Z4K0 1415 aa18.87■□□□□ 0.61
Nup88-201ENSMUST00000035283 CntlnA2AM05 1397 aa18.86■□□□□ 0.61
Nup88-201ENSMUST00000035283 Lmo7E9PYF4 1699 aaKnown RBP18.86■□□□□ 0.61
Nup88-201ENSMUST00000035283 Calr4Q3TQS0 420 aa18.86■□□□□ 0.61
Nup88-201ENSMUST00000035283 Cux1P53564 1515 aa18.85■□□□□ 0.61
Nup88-201ENSMUST00000035283 Nolc1E9Q5C9 702 aaKnown RBP18.85■□□□□ 0.61
Nup88-201ENSMUST00000035283 Slc24a1Q91WD8 1130 aa18.83■□□□□ 0.61
Nup88-201ENSMUST00000035283 Ccer2J3QPU5 274 aa18.82■□□□□ 0.6
Nup88-201ENSMUST00000035283 Mia2Q91ZV0 1396 aa18.82■□□□□ 0.6
Nup88-201ENSMUST00000035283 Unc13aQ4KUS2 1712 aa18.82■□□□□ 0.6
Nup88-201ENSMUST00000035283 Fyco1Q8VDC1 1437 aa18.81■□□□□ 0.6
Nup88-201ENSMUST00000035283 Vps8Q0P5W1 1427 aa18.8■□□□□ 0.6
Nup88-201ENSMUST00000035283 Smg6P61406 1418 aaKnown RBP18.78■□□□□ 0.6
Nup88-201ENSMUST00000035283 Carmil1Q6EDY6 1374 aa18.77■□□□□ 0.6
Nup88-201ENSMUST00000035283 Naip2Q9QUK4 1447 aa18.77■□□□□ 0.6
Nup88-201ENSMUST00000035283 Bcl11aQ9QYE3 773 aa18.75■□□□□ 0.59
Nup88-201ENSMUST00000035283 Efcab5A0JP43 1406 aa18.75■□□□□ 0.59
Nup88-201ENSMUST00000035283 Ube2uB1AUC4 352 aa18.74■□□□□ 0.59
Nup88-201ENSMUST00000035283 DiexfQ8BTT6 772 aaKnown RBP18.73■□□□□ 0.59
Nup88-201ENSMUST00000035283 Gm7298A0A0N4SVU1 1476 aa18.73■□□□□ 0.59
Nup88-201ENSMUST00000035283 Aebp1Q640N1 1128 aa18.72■□□□□ 0.59
Nup88-201ENSMUST00000035283 Ercc6F8VPZ5 1481 aa18.72■□□□□ 0.59
Nup88-201ENSMUST00000035283 Urb2E9Q7L1 1524 aaKnown RBP18.71■□□□□ 0.59
Nup88-201ENSMUST00000035283 Naip5Q9R016 1403 aa18.71■□□□□ 0.59
Nup88-201ENSMUST00000035283 Gm1043A0A140LJC2 1431 aa18.7■□□□□ 0.58
Nup88-201ENSMUST00000035283 Chic2Q9D9G3 165 aa18.7■□□□□ 0.58
Nup88-201ENSMUST00000035283 Crocc2F6XLV1 1638 aa18.69■□□□□ 0.58
Nup88-201ENSMUST00000035283 Ncoa2Q61026 1462 aa18.69■□□□□ 0.58
Nup88-201ENSMUST00000035283 Peg3Q3URU2 1571 aa18.69■□□□□ 0.58
Nup88-201ENSMUST00000035283 Camsap2Q8C1B1 1461 aa18.68■□□□□ 0.58
Nup88-201ENSMUST00000035283 A2mQ6GQT1 1474 aa18.68■□□□□ 0.58
Nup88-201ENSMUST00000035283 Dennd4bQ3U1Y4 1499 aa18.67■□□□□ 0.58
Nup88-201ENSMUST00000035283 Supt16hQ920B9 1047 aa18.65■□□□□ 0.58
Nup88-201ENSMUST00000035283 Cux2P70298 1426 aa18.64■□□□□ 0.58
Nup88-201ENSMUST00000035283 Eif5bQ05D44 1216 aaKnown RBP18.63■□□□□ 0.57
Nup88-201ENSMUST00000035283 Npm1Q61937 292 aaKnown RBP18.63■□□□□ 0.57
Nup88-201ENSMUST00000035283 Washc2Q6PGL7 1334 aa18.6■□□□□ 0.57
Nup88-201ENSMUST00000035283 Ppp4r2Q0VGB7 417 aa18.6■□□□□ 0.57
Nup88-201ENSMUST00000035283 Duox2A2AQ99 1517 aa18.59■□□□□ 0.57
Nup88-201ENSMUST00000035283 Ccnb3Q810T2 1396 aa18.59■□□□□ 0.57
Nup88-201ENSMUST00000035283 LrpprcQ6PB66 1392 aaKnown RBP18.58■□□□□ 0.57
Nup88-201ENSMUST00000035283 Ifnlr1Q8CGK5 535 aa18.58■□□□□ 0.56
Nup88-201ENSMUST00000035283 Mrs2Q5NCE8 434 aa18.56■□□□□ 0.56
Nup88-201ENSMUST00000035283 PogzQ8BZH4 1409 aaKnown RBP18.56■□□□□ 0.56
Nup88-201ENSMUST00000035283 Cul7Q8VE73 1689 aa18.56■□□□□ 0.56
Nup88-201ENSMUST00000035283 Wdr43Q6ZQL4 677 aaKnown RBP18.55■□□□□ 0.56
Nup88-201ENSMUST00000035283 P3h3Q8CG70 732 aa18.54■□□□□ 0.56
Nup88-201ENSMUST00000035283 Mphosph9A6H5Y1 991 aa18.53■□□□□ 0.56
Nup88-201ENSMUST00000035283 Slc4a2P13808 1237 aaKnown RBP18.53■□□□□ 0.56
Nup88-201ENSMUST00000035283 Rtl5Q5DTT4 599 aa18.52■□□□□ 0.56
Nup88-201ENSMUST00000035283 Wwc2Q6NXJ0 1187 aa18.51■□□□□ 0.55
Nup88-201ENSMUST00000035283 Pprc1Q6NZN1 1644 aa18.51■□□□□ 0.55
Nup88-201ENSMUST00000035283 SynmQ70IV5 1561 aa18.51■□□□□ 0.55
Nup88-201ENSMUST00000035283 Ubl4bQ9CQ84 188 aa18.5■□□□□ 0.55
Nup88-201ENSMUST00000035283 Rad54l2Q99NG0 1466 aa18.48■□□□□ 0.55
Nup88-201ENSMUST00000035283 Thoc2B1AZI6 1594 aaKnown RBP18.48■□□□□ 0.55
Nup88-201ENSMUST00000035283 Samd9lQ69Z37 1561 aa18.48■□□□□ 0.55
Nup88-201ENSMUST00000035283 Phldb1Q6PDH0 1371 aaKnown RBP18.48■□□□□ 0.55
Nup88-201ENSMUST00000035283 Lmtk2Q3TYD6 1471 aa18.46■□□□□ 0.55
Nup88-201ENSMUST00000035283 Ncoa1P70365 1447 aa18.46■□□□□ 0.54
Nup88-201ENSMUST00000035283 Exoc6Q8R313 802 aa18.45■□□□□ 0.54
Nup88-201ENSMUST00000035283 Fhod3Q76LL6 1578 aa18.45■□□□□ 0.54
Nup88-201ENSMUST00000035283 Pak3Q61036 559 aa18.44■□□□□ 0.54
Nup88-201ENSMUST00000035283 Polr1aO35134 1717 aaKnown RBP18.44■□□□□ 0.54
Nup88-201ENSMUST00000035283 Zfp644E9QA22 1323 aa18.43■□□□□ 0.54
Nup88-201ENSMUST00000035283 Gm13695A2AK44 830 aa18.42■□□□□ 0.54
Nup88-201ENSMUST00000035283 Pelp1Q9DBD5 1123 aaKnown RBP18.42■□□□□ 0.54
Nup88-201ENSMUST00000035283 Usp47Q8BY87 1376 aa18.42■□□□□ 0.54
Nup88-201ENSMUST00000035283 Liat1Q810M6 228 aa18.41■□□□□ 0.54
Nup88-201ENSMUST00000035283 Pkd2O35245 966 aa18.4■□□□□ 0.54
Nup88-201ENSMUST00000035283 NrdcQ8BHG1 1161 aa18.4■□□□□ 0.54
Nup88-201ENSMUST00000035283 Cabp1Q9JLK7 227 aa18.4■□□□□ 0.54
Nup88-201ENSMUST00000035283 Gpatch8A2A6A1 1505 aa18.39■□□□□ 0.53
Retrieved 100 of 22,080 RNA–protein pairs in 8.5 ms