RNA–Protein interactions for RNA: ENSMUST00000005705.7

Trim28-201, Transcript of Transcription intermediary factor 1-beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim28, Length 3,245 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28-201ENSMUST00000005705 Camsap1A2AHC3 1581 aa23.28■■□□□ 1.32
Trim28-201ENSMUST00000005705 Shroom4Q1W617 1475 aa23.28■■□□□ 1.32
Trim28-201ENSMUST00000005705 Unc13aQ4KUS2 1712 aa23.28■■□□□ 1.32
Trim28-201ENSMUST00000005705 Ccdc18Q640L5 1455 aa23.26■■□□□ 1.31
Trim28-201ENSMUST00000005705 Ubl4bQ9CQ84 188 aa23.26■■□□□ 1.31
Trim28-201ENSMUST00000005705 Npm1Q61937 292 aaKnown RBP23.23■■□□□ 1.31
Trim28-201ENSMUST00000005705 Ncapd3Q6ZQK0 1506 aa23.23■■□□□ 1.31
Trim28-201ENSMUST00000005705 Fam71e1A1L3C1 212 aa23.21■■□□□ 1.31
Trim28-201ENSMUST00000005705 BlmO88700 1416 aa23.2■■□□□ 1.31
Trim28-201ENSMUST00000005705 Baz1bQ9Z277 1479 aa23.18■■□□□ 1.3
Trim28-201ENSMUST00000005705 Grin2bQ01097 1482 aa23.17■■□□□ 1.3
Trim28-201ENSMUST00000005705 Cux2P70298 1426 aa23.16■■□□□ 1.3
Trim28-201ENSMUST00000005705 Chic2Q9D9G3 165 aa23.14■■□□□ 1.3
Trim28-201ENSMUST00000005705 Arhgef5E9Q7D5 1581 aa23.12■■□□□ 1.29
Trim28-201ENSMUST00000005705 Hspa5P20029 655 aaKnown RBP23.1■■□□□ 1.29
Trim28-201ENSMUST00000005705 Phldb1Q6PDH0 1371 aaKnown RBP23.1■■□□□ 1.29
Trim28-201ENSMUST00000005705 Mroh2bQ7M6Y6 1581 aa23.08■■□□□ 1.28
Trim28-201ENSMUST00000005705 Map3k1P53349 1493 aa23.05■■□□□ 1.28
Trim28-201ENSMUST00000005705 AqrQ8CFQ3 1481 aaKnown RBP23.05■■□□□ 1.28
Trim28-201ENSMUST00000005705 Sin3aQ60520 1274 aaKnown RBP23.04■■□□□ 1.28
Trim28-201ENSMUST00000005705 Tnnt3Q9QZ47 272 aa22.99■■□□□ 1.27
Trim28-201ENSMUST00000005705 Eif5bQ05D44 1216 aaKnown RBP22.99■■□□□ 1.27
Trim28-201ENSMUST00000005705 Naip1Q9QWK5 1403 aa22.98■■□□□ 1.27
Trim28-201ENSMUST00000005705 Tiam1Q60610 1591 aa22.97■■□□□ 1.27
Trim28-201ENSMUST00000005705 Ankrd26Q811D2 1581 aa22.95■■□□□ 1.26
Trim28-201ENSMUST00000005705 PrkcshO08795 521 aa22.95■■□□□ 1.26
Trim28-201ENSMUST00000005705 LrpprcQ6PB66 1392 aaKnown RBP22.94■■□□□ 1.26
Trim28-201ENSMUST00000005705 Pcf11G3X9Z4 1553 aa22.9■■□□□ 1.26
Trim28-201ENSMUST00000005705 Slx4Q6P1D7 1565 aa22.88■■□□□ 1.25
Trim28-201ENSMUST00000005705 Duox2A2AQ99 1517 aa22.88■■□□□ 1.25
Trim28-201ENSMUST00000005705 Cux1P53564 1515 aa22.87■■□□□ 1.25
Trim28-201ENSMUST00000005705 Thoc2B1AZI6 1594 aaKnown RBP22.86■■□□□ 1.25
Trim28-201ENSMUST00000005705 Carmil1Q6EDY6 1374 aa22.86■■□□□ 1.25
Trim28-201ENSMUST00000005705 Efcab5A0JP43 1406 aa22.85■■□□□ 1.25
Trim28-201ENSMUST00000005705 PogzQ8BZH4 1409 aaKnown RBP22.83■■□□□ 1.25
Trim28-201ENSMUST00000005705 Kdm5bQ80Y84 1544 aa22.81■■□□□ 1.24
Trim28-201ENSMUST00000005705 Erich3F6QRE9 1637 aa22.8■■□□□ 1.24
Trim28-201ENSMUST00000005705 Ifnlr1Q8CGK5 535 aa22.8■■□□□ 1.24
Trim28-201ENSMUST00000005705 Zbtb7cQ8VCZ7 619 aa22.8■■□□□ 1.24
Trim28-201ENSMUST00000005705 P3h3Q8CG70 732 aa22.78■■□□□ 1.24
Trim28-201ENSMUST00000005705 Rad54l2Q99NG0 1466 aa22.78■■□□□ 1.24
Trim28-201ENSMUST00000005705 Zbtb4Q5F293 982 aa22.78■■□□□ 1.24
Trim28-201ENSMUST00000005705 Aebp1Q640N1 1128 aa22.78■■□□□ 1.24
Trim28-201ENSMUST00000005705 Dhx29Q6PGC1 1365 aaKnown RBP22.77■■□□□ 1.24
Trim28-201ENSMUST00000005705 CntlnA2AM05 1397 aa22.75■■□□□ 1.23
Trim28-201ENSMUST00000005705 Znf710Q3U288 666 aa22.72■■□□□ 1.23
Trim28-201ENSMUST00000005705 Anp32aO35381 247 aa22.7■■□□□ 1.23
Trim28-201ENSMUST00000005705 Samd9lQ69Z37 1561 aa22.7■■□□□ 1.22
Trim28-201ENSMUST00000005705 3425401B19RikD3Z1D3 1412 aa22.69■■□□□ 1.22
Trim28-201ENSMUST00000005705 Stra8P70278 393 aa22.69■■□□□ 1.22
Trim28-201ENSMUST00000005705 Rpap1Q80TE0 1409 aa22.69■■□□□ 1.22
Trim28-201ENSMUST00000005705 Lmo7E9PYF4 1699 aaKnown RBP22.69■■□□□ 1.22
Trim28-201ENSMUST00000005705 Calr4Q3TQS0 420 aa22.66■■□□□ 1.22
Trim28-201ENSMUST00000005705 Urb2E9Q7L1 1524 aaKnown RBP22.66■■□□□ 1.22
Trim28-201ENSMUST00000005705 Fyco1Q8VDC1 1437 aa22.65■■□□□ 1.22
Trim28-201ENSMUST00000005705 SynmQ70IV5 1561 aa22.64■■□□□ 1.21
Trim28-201ENSMUST00000005705 Fam135aQ6NS59 1506 aa22.64■■□□□ 1.21
Trim28-201ENSMUST00000005705 Nolc1E9Q5C9 702 aaKnown RBP22.64■■□□□ 1.21
Trim28-201ENSMUST00000005705 TchhA0A0B4J1F9 1599 aa22.61■■□□□ 1.21
Trim28-201ENSMUST00000005705 Amer1Q7TS75 1132 aa22.57■■□□□ 1.2
Trim28-201ENSMUST00000005705 Fkbp15Q6P9Q6 1216 aaKnown RBP22.57■■□□□ 1.2
Trim28-201ENSMUST00000005705 Wwc2Q6NXJ0 1187 aa22.54■■□□□ 1.2
Trim28-201ENSMUST00000005705 Gm1043A0A140LJC2 1431 aa22.53■■□□□ 1.2
Trim28-201ENSMUST00000005705 Dnajc5bQ9CQ94 199 aa22.53■■□□□ 1.2
Trim28-201ENSMUST00000005705 Zfp644E9QA22 1323 aa22.52■■□□□ 1.2
Trim28-201ENSMUST00000005705 Mrs2Q5NCE8 434 aa22.52■■□□□ 1.19
Trim28-201ENSMUST00000005705 Gm7298A0A0N4SVU1 1476 aa22.51■■□□□ 1.19
Trim28-201ENSMUST00000005705 Crocc2F6XLV1 1638 aa22.49■■□□□ 1.19
Trim28-201ENSMUST00000005705 Ccnb3Q810T2 1396 aa22.49■■□□□ 1.19
Trim28-201ENSMUST00000005705 Mia2Q91ZV0 1396 aa22.48■■□□□ 1.19
Trim28-201ENSMUST00000005705 EprsQ8CGC7 1512 aaKnown RBP22.48■■□□□ 1.19
Trim28-201ENSMUST00000005705 Ppp4r2Q0VGB7 417 aa22.47■■□□□ 1.19
Trim28-201ENSMUST00000005705 Polr1aO35134 1717 aaKnown RBP22.46■■□□□ 1.19
Trim28-201ENSMUST00000005705 Kif21aQ9QXL2 1672 aa22.46■■□□□ 1.19
Trim28-201ENSMUST00000005705 Fhad1A6PWD2 1420 aa22.46■■□□□ 1.19
Trim28-201ENSMUST00000005705 Kif27Q7M6Z4 1394 aa22.44■■□□□ 1.18
Trim28-201ENSMUST00000005705 Slc4a3P16283 1227 aa22.43■■□□□ 1.18
Trim28-201ENSMUST00000005705 Ccer2J3QPU5 274 aa22.42■■□□□ 1.18
Trim28-201ENSMUST00000005705 Naip2Q9QUK4 1447 aa22.42■■□□□ 1.18
Trim28-201ENSMUST00000005705 Pla2r1Q62028 1487 aa22.42■■□□□ 1.18
Trim28-201ENSMUST00000005705 CadpsQ80TJ1 1355 aa22.42■■□□□ 1.18
Trim28-201ENSMUST00000005705 Cabp1Q9JLK7 227 aa22.42■■□□□ 1.18
Trim28-201ENSMUST00000005705 A2mQ6GQT1 1474 aa22.41■■□□□ 1.18
Trim28-201ENSMUST00000005705 Peg3Q3URU2 1571 aa22.41■■□□□ 1.18
Trim28-201ENSMUST00000005705 Ttbk1Q6PCN3 1308 aa22.4■■□□□ 1.18
Trim28-201ENSMUST00000005705 Gm13697A2AK42 830 aa22.4■■□□□ 1.18
Trim28-201ENSMUST00000005705 Vps8Q0P5W1 1427 aa22.39■■□□□ 1.17
Trim28-201ENSMUST00000005705 Mrc2Q64449 1479 aa22.38■■□□□ 1.17
Trim28-201ENSMUST00000005705 Plb1Q3TTY0 1478 aa22.38■■□□□ 1.17
Trim28-201ENSMUST00000005705 Rgl3Q3UYI5 709 aa22.38■■□□□ 1.17
Trim28-201ENSMUST00000005705 Gpatch8A2A6A1 1505 aa22.37■■□□□ 1.17
Trim28-201ENSMUST00000005705 Supt16hQ920B9 1047 aa22.36■■□□□ 1.17
Trim28-201ENSMUST00000005705 NrdcQ8BHG1 1161 aa22.33■■□□□ 1.17
Trim28-201ENSMUST00000005705 Magi3Q9EQJ9 1476 aa22.33■■□□□ 1.17
Trim28-201ENSMUST00000005705 Grin2aP35436 1464 aa22.33■■□□□ 1.16
Trim28-201ENSMUST00000005705 Grwd1Q810D6 446 aaKnown RBP22.32■■□□□ 1.16
Trim28-201ENSMUST00000005705 Mphosph9A6H5Y1 991 aa22.32■■□□□ 1.16
Trim28-201ENSMUST00000005705 Ankrd36D3Z4K0 1415 aa22.31■■□□□ 1.16
Trim28-201ENSMUST00000005705 Arhgap27A2AB59 869 aa22.29■■□□□ 1.16
Trim28-201ENSMUST00000005705 WizO88286 1684 aaKnown RBP22.29■■□□□ 1.16
Retrieved 100 of 22,080 RNA–protein pairs in 20.8 ms