RNA–Protein interactions for RNA: ENSMUST00000001147.4

Col6a1-201, Transcript of Collagen alpha-1(VI) chain, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Col6a1, Length 4,100 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1-201ENSMUST00000001147 Zbtb4Q5F293 982 aa13.12□□□□□ -0.31
Col6a1-201ENSMUST00000001147 Smarca4Q3TKT4 1613 aaKnown RBP13.12□□□□□ -0.31
Col6a1-201ENSMUST00000001147 Bcl11aQ9QYE3 773 aa13.09□□□□□ -0.31
Col6a1-201ENSMUST00000001147 Mrs2Q5NCE8 434 aa13.08□□□□□ -0.32
Col6a1-201ENSMUST00000001147 Ppp4r2Q0VGB7 417 aa13.05□□□□□ -0.32
Col6a1-201ENSMUST00000001147 Sin3aQ60520 1274 aaKnown RBP13.05□□□□□ -0.32
Col6a1-201ENSMUST00000001147 Ccdc18Q640L5 1455 aa13.04□□□□□ -0.32
Col6a1-201ENSMUST00000001147 Top2aQ01320 1528 aaKnown RBP13.04□□□□□ -0.32
Col6a1-201ENSMUST00000001147 BicraF8VPZ9 1578 aa13.04□□□□□ -0.32
Col6a1-201ENSMUST00000001147 P3h3Q8CG70 732 aa13.03□□□□□ -0.32
Col6a1-201ENSMUST00000001147 Baz1bQ9Z277 1479 aa13.01□□□□□ -0.33
Col6a1-201ENSMUST00000001147 Top2bQ64511 1612 aa13□□□□□ -0.33
Col6a1-201ENSMUST00000001147 Fkbp15Q6P9Q6 1216 aaKnown RBP13□□□□□ -0.33
Col6a1-201ENSMUST00000001147 Pds5bQ4VA53 1446 aaKnown RBP12.99□□□□□ -0.33
Col6a1-201ENSMUST00000001147 Anp32bQ9EST5 272 aaKnown RBP12.99□□□□□ -0.33
Col6a1-201ENSMUST00000001147 Ercc6F8VPZ5 1481 aa12.97□□□□□ -0.33
Col6a1-201ENSMUST00000001147 Iqgap2Q3UQ44 1575 aa12.97□□□□□ -0.33
Col6a1-201ENSMUST00000001147 Gm13697A2AK42 830 aa12.96□□□□□ -0.33
Col6a1-201ENSMUST00000001147 Atad2bE9Q166 1460 aaKnown RBP12.96□□□□□ -0.34
Col6a1-201ENSMUST00000001147 NeflP08551 543 aa12.95□□□□□ -0.34
Col6a1-201ENSMUST00000001147 Aebp1Q640N1 1128 aa12.95□□□□□ -0.34
Col6a1-201ENSMUST00000001147 Ncapd3Q6ZQK0 1506 aa12.95□□□□□ -0.34
Col6a1-201ENSMUST00000001147 Wdr43Q6ZQL4 677 aaKnown RBP12.94□□□□□ -0.34
Col6a1-201ENSMUST00000001147 Arhgap35Q91YM2 1499 aa12.93□□□□□ -0.34
Col6a1-201ENSMUST00000001147 Rgl3Q3UYI5 709 aa12.92□□□□□ -0.34
Col6a1-201ENSMUST00000001147 4933416C03RikQ3V063 378 aa12.92□□□□□ -0.34
Col6a1-201ENSMUST00000001147 PtprkP35822 1457 aa12.92□□□□□ -0.34
Col6a1-201ENSMUST00000001147 Mia2Q91ZV0 1396 aa12.91□□□□□ -0.34
Col6a1-201ENSMUST00000001147 Wwc2Q6NXJ0 1187 aa12.91□□□□□ -0.34
Col6a1-201ENSMUST00000001147 Os9Q8K2C7 672 aa12.91□□□□□ -0.34
Col6a1-201ENSMUST00000001147 Arap1Q4LDD4 1452 aa12.91□□□□□ -0.34
Col6a1-201ENSMUST00000001147 Ifnlr1Q8CGK5 535 aa12.87□□□□□ -0.35
Col6a1-201ENSMUST00000001147 CntlnA2AM05 1397 aa12.86□□□□□ -0.35
Col6a1-201ENSMUST00000001147 Fyco1Q8VDC1 1437 aa12.85□□□□□ -0.35
Col6a1-201ENSMUST00000001147 Cux2P70298 1426 aa12.85□□□□□ -0.35
Col6a1-201ENSMUST00000001147 Grwd1Q810D6 446 aaKnown RBP12.85□□□□□ -0.35
Col6a1-201ENSMUST00000001147 Rad21Q61550 635 aaKnown RBP12.84□□□□□ -0.35
Col6a1-201ENSMUST00000001147 Prdm10Q3UTQ7 1184 aa12.83□□□□□ -0.36
Col6a1-201ENSMUST00000001147 Erich6D3Z6S9 713 aa12.82□□□□□ -0.36
Col6a1-201ENSMUST00000001147 Cabp1Q9JLK7 227 aa12.82□□□□□ -0.36
Col6a1-201ENSMUST00000001147 Mphosph9A6H5Y1 991 aa12.81□□□□□ -0.36
Col6a1-201ENSMUST00000001147 Pkd2O35245 966 aa12.81□□□□□ -0.36
Col6a1-201ENSMUST00000001147 Naip1Q9QWK5 1403 aa12.81□□□□□ -0.36
Col6a1-201ENSMUST00000001147 Shroom4Q1W617 1475 aa12.81□□□□□ -0.36
Col6a1-201ENSMUST00000001147 Ofd1Q80Z25 1017 aa12.8□□□□□ -0.36
Col6a1-201ENSMUST00000001147 Carmil1Q6EDY6 1374 aa12.8□□□□□ -0.36
Col6a1-201ENSMUST00000001147 Slc4a3P16283 1227 aa12.8□□□□□ -0.36
Col6a1-201ENSMUST00000001147 Nolc1E9Q5C9 702 aaKnown RBP12.79□□□□□ -0.36
Col6a1-201ENSMUST00000001147 Arhgap27A2AB59 869 aa12.79□□□□□ -0.36
Col6a1-201ENSMUST00000001147 Znf710Q3U288 666 aa12.79□□□□□ -0.36
Col6a1-201ENSMUST00000001147 Exoc6Q8R313 802 aa12.79□□□□□ -0.36
Col6a1-201ENSMUST00000001147 Kif27Q7M6Z4 1394 aa12.79□□□□□ -0.36
Col6a1-201ENSMUST00000001147 Arhgef5E9Q7D5 1581 aa12.77□□□□□ -0.36
Col6a1-201ENSMUST00000001147 Ccnb3Q810T2 1396 aa12.75□□□□□ -0.37
Col6a1-201ENSMUST00000001147 Card11Q8CIS0 1159 aa12.74□□□□□ -0.37
Col6a1-201ENSMUST00000001147 LrpprcQ6PB66 1392 aaKnown RBP12.73□□□□□ -0.37
Col6a1-201ENSMUST00000001147 Supt16hQ920B9 1047 aa12.73□□□□□ -0.37
Col6a1-201ENSMUST00000001147 Smg6P61406 1418 aaKnown RBP12.72□□□□□ -0.37
Col6a1-201ENSMUST00000001147 Rpap1Q80TE0 1409 aa12.72□□□□□ -0.37
Col6a1-201ENSMUST00000001147 Mtus2Q3UHD3 1353 aa12.71□□□□□ -0.37
Col6a1-201ENSMUST00000001147 DaxxO35613 739 aa12.71□□□□□ -0.38
Col6a1-201ENSMUST00000001147 AqrQ8CFQ3 1481 aaKnown RBP12.7□□□□□ -0.38
Col6a1-201ENSMUST00000001147 NrkQ9R0G8 1455 aa12.7□□□□□ -0.38
Col6a1-201ENSMUST00000001147 Frmpd1A2AKB4 1549 aa12.7□□□□□ -0.38
Col6a1-201ENSMUST00000001147 Rundc1Q0VDN7 615 aa12.69□□□□□ -0.38
Col6a1-201ENSMUST00000001147 Phldb1Q6PDH0 1371 aaKnown RBP12.69□□□□□ -0.38
Col6a1-201ENSMUST00000001147 Tiam1Q60610 1591 aa12.68□□□□□ -0.38
Col6a1-201ENSMUST00000001147 Trak1Q6PD31 939 aa12.68□□□□□ -0.38
Col6a1-201ENSMUST00000001147 Mroh2bQ7M6Y6 1581 aa12.67□□□□□ -0.38
Col6a1-201ENSMUST00000001147 Fhad1A6PWD2 1420 aa12.67□□□□□ -0.38
Col6a1-201ENSMUST00000001147 Cwc22Q8C5N3 908 aaKnown RBP12.67□□□□□ -0.38
Col6a1-201ENSMUST00000001147 Nlrp6Q91WS2 869 aa12.66□□□□□ -0.38
Col6a1-201ENSMUST00000001147 Zfp644E9QA22 1323 aa12.66□□□□□ -0.38
Col6a1-201ENSMUST00000001147 Grin2bQ01097 1482 aa12.65□□□□□ -0.38
Col6a1-201ENSMUST00000001147 ArxO35085 564 aa12.65□□□□□ -0.38
Col6a1-201ENSMUST00000001147 Map3k1P53349 1493 aa12.64□□□□□ -0.39
Col6a1-201ENSMUST00000001147 Usp47Q8BY87 1376 aa12.64□□□□□ -0.39
Col6a1-201ENSMUST00000001147 Dhx29Q6PGC1 1365 aaKnown RBP12.64□□□□□ -0.39
Col6a1-201ENSMUST00000001147 Gm13695A2AK44 830 aa12.64□□□□□ -0.39
Col6a1-201ENSMUST00000001147 Polr3glQ8R0C0 218 aa12.63□□□□□ -0.39
Col6a1-201ENSMUST00000001147 Ankrd36D3Z4K0 1415 aa12.62□□□□□ -0.39
Col6a1-201ENSMUST00000001147 Rad54l2Q99NG0 1466 aa12.62□□□□□ -0.39
Col6a1-201ENSMUST00000001147 Rrp7aQ9D1C9 280 aaKnown RBP12.62□□□□□ -0.39
Col6a1-201ENSMUST00000001147 Efcab5A0JP43 1406 aa12.61□□□□□ -0.39
Col6a1-201ENSMUST00000001147 Vps8Q0P5W1 1427 aa12.61□□□□□ -0.39
Col6a1-201ENSMUST00000001147 Kdm2aP59997 1161 aa12.6□□□□□ -0.39
Col6a1-201ENSMUST00000001147 Map4P27546 1125 aaKnown RBP12.59□□□□□ -0.39
Col6a1-201ENSMUST00000001147 Ccdc9Q8VC31 543 aaKnown RBP12.59□□□□□ -0.39
Col6a1-201ENSMUST00000001147 Apbb1Q9QXJ1 710 aa12.59□□□□□ -0.39
Col6a1-201ENSMUST00000001147 Upf2A2AT37 1269 aaKnown RBP12.59□□□□□ -0.39
Col6a1-201ENSMUST00000001147 Clstn2Q9ER65 966 aa12.59□□□□□ -0.39
Col6a1-201ENSMUST00000001147 Camsap1A2AHC3 1581 aa12.58□□□□□ -0.4
Col6a1-201ENSMUST00000001147 UacaQ8CGB3 1411 aa12.58□□□□□ -0.4
Col6a1-201ENSMUST00000001147 Duox2A2AQ99 1517 aa12.57□□□□□ -0.4
Col6a1-201ENSMUST00000001147 Plppr3Q7TPB0 716 aa12.57□□□□□ -0.4
Col6a1-201ENSMUST00000001147 Pcf11G3X9Z4 1553 aa12.57□□□□□ -0.4
Col6a1-201ENSMUST00000001147 PrkcshO08795 521 aa12.57□□□□□ -0.4
Col6a1-201ENSMUST00000001147 Slc4a2P13808 1237 aaKnown RBP12.57□□□□□ -0.4
Col6a1-201ENSMUST00000001147 Rangap1P46061 589 aaKnown RBP12.56□□□□□ -0.4
Col6a1-201ENSMUST00000001147 Mroh3A0A1D5RM54 893 aa12.54□□□□□ -0.4
Retrieved 100 of 22,080 RNA–protein pairs in 119.7 ms