RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 STRCP1A6NGW2 1772 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 GAPVD1Q14C86 1478 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 TEX14Q8IWB6 1497 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 CPSF1Q10570 1443 aaKnown RBP0.98□□□□□ -2.25
CD44-239ENST00000639002 TROQ12816 1431 aaPredicted RBP0.98□□□□□ -2.25
CD44-239ENST00000639002 COL4A5P29400 1685 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 ZNF142P52746 1687 aaPredicted RBP0.97□□□□□ -2.25
CD44-239ENST00000639002 ROBO1Q9Y6N7 1651 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 KMT2DO14686 5537 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 RNF213Q63HN8 5207 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 CC2D2AQ9P2K1 1620 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 KIAA2026Q5HYC2 2103 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 MED12LQ86YW9 2145 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 PATJQ8NI35 1801 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 MPDZO75970 2070 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 TRGV2A0A075B6R0 118 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 NAP1L6A6NFF2 107 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 HIGD1CA8MV81 97 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 JMJD7-PLA2G4BH0Y9G9 81 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 ARL14EPLP0DKL9 152 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 SNCAP37840 140 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 RBM3P98179 157 aaKnown RBP0.97□□□□□ -2.25
CD44-239ENST00000639002 INSL4Q14641 139 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 TPRXLQ17RH7 258 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 KRTAP26-1Q6PEX3 210 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 LYPD5Q6UWN5 251 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 CYP2G1PQ6ZSU1 146 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 COMMD6Q7Z4G1 85 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 Q8N8P6 123 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 SPTSSBQ8NFR3 76 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 SNHG12Q9BXW3 62 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 REG4Q9BYZ8 158 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 MED9Q9NWA0 146 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 SCP2D1Q9UJQ7 156 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 C22orf24Q9Y442 160 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 MCM3APO60318 1980 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 IFT140Q96RY7 1462 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 CDK12Q9NYV4 1490 aaPredicted RBP0.97□□□□□ -2.25
CD44-239ENST00000639002 TENM3Q9P273 2699 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 PPRC1Q5VV67 1664 aaKnown RBP0.97□□□□□ -2.25
CD44-239ENST00000639002 FLG2Q5D862 2391 aaPredicted RBP0.97□□□□□ -2.25
CD44-239ENST00000639002 TANC1Q9C0D5 1861 aa0.97□□□□□ -2.25
CD44-239ENST00000639002 RGPD4Q7Z3J3 1758 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 ARAP2Q8WZ64 1704 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 TRAV23DV6A0A075B6W5 121 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 TRAV13-2A0A0B4J235 113 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 A0A0J9YY99 117 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 NUPR2A6NF83 97 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 MPC2O95563 127 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 IGKCP01834 107 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 CCKP06307 115 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 IL9P15248 144 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 CCL8P80075 99 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 SPATA45Q537H7 98 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 SBSPONQ8IVN8 264 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 SPACA4Q8TDM5 124 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 DSCR8Q96T75 97 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 CYP4F30PQ9H0H9 118 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 WFDC10AQ9H1F0 79 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 DPH3P1Q9H4G8 78 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 PTPRZ1P23471 2315 aaPredicted RBP0.96□□□□□ -2.26
CD44-239ENST00000639002 TOPAZ1Q8N9V7 1692 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 NINQ8N4C6 2090 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 ICE1Q9Y2F5 2266 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 CHD3Q12873 2000 aaKnown RBP0.96□□□□□ -2.26
CD44-239ENST00000639002 NF1P21359 2839 aa0.96□□□□□ -2.26
CD44-239ENST00000639002 MUC22E2RYF6 1773 aaPredicted RBP0.96□□□□□ -2.26
CD44-239ENST00000639002 HEATR5BQ9P2D3 2071 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 ADGRL2O95490 1459 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 MAGI1Q96QZ7 1491 aaPredicted RBP0.95□□□□□ -2.26
CD44-239ENST00000639002 TRAV12-3A0A0B4J271 114 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 TEX49A0A1B0GTD5 131 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 CXorf51AA0A1B0GTR3 108 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 GNGT2O14610 69 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 MRPS14O60783 128 aaKnown RBP0.95□□□□□ -2.26
CD44-239ENST00000639002 IGHV3-30P01768 117 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 GYPAP02724 150 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 IGHV3-30-5P0DP03 117 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 GNG11P61952 73 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 FAM74A4Q5TZK3 123 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 CSAG1Q6PB30 78 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 LINC00322Q6ZN03 302 aaPredicted RBP0.95□□□□□ -2.26
CD44-239ENST00000639002 ZNF818PQ6ZRF7 136 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 C15orf53Q8NAA6 179 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 IFI27L1Q96BM0 104 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 MGST2Q99735 147 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 PMCHL2Q9BQD1 86 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 FAIMQ9NVQ4 179 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 C10orf71Q711Q0 1435 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 SCAPERQ9BY12 1400 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 HEATR1Q9H583 2144 aaKnown RBP0.95□□□□□ -2.26
CD44-239ENST00000639002 CRYBG3Q68DQ2 2970 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 DLG5Q8TDM6 1919 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 CHD1O14646 1710 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 SUPT6HQ7KZ85 1726 aaKnown RBP0.95□□□□□ -2.26
CD44-239ENST00000639002 NRXN2Q9P2S2 1712 aa0.95□□□□□ -2.26
CD44-239ENST00000639002 ABCC3O15438 1527 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 PRRC2CQ9Y520 2896 aaKnown RBP0.94□□□□□ -2.26
CD44-239ENST00000639002 TET3O43151 1660 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 MYO9BQ13459 2157 aa0.94□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 119.2 ms