RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 CIRBPQ14011 172 aaKnown RBP10.28□□□□□ -0.76
CLN3-246ENST00000636228 MANBALQ9NQG1 85 aa10.28□□□□□ -0.76
CLN3-246ENST00000636228 IGHV3-64A0A075B6Q5 118 aa10.27□□□□□ -0.77
CLN3-246ENST00000636228 A0A1B0GUV1 79 aa10.27□□□□□ -0.77
CLN3-246ENST00000636228 NTF3P20783 257 aa10.27□□□□□ -0.77
CLN3-246ENST00000636228 GNG4P50150 75 aa10.27□□□□□ -0.77
CLN3-246ENST00000636228 IFITM2Q01629 132 aa10.27□□□□□ -0.77
CLN3-246ENST00000636228 LYPD6BQ8NI32 183 aa10.27□□□□□ -0.77
CLN3-246ENST00000636228 NIT2Q9NQR4 276 aa10.27□□□□□ -0.77
CLN3-246ENST00000636228 TRBV20OR9-2A0A075B6H5 130 aa10.26□□□□□ -0.77
CLN3-246ENST00000636228 A0A087WYN8 130 aa10.26□□□□□ -0.77
CLN3-246ENST00000636228 IGKV3OR2-268A0A0C4DH90 116 aa10.26□□□□□ -0.77
CLN3-246ENST00000636228 TEX46H3BTG2 121 aa10.26□□□□□ -0.77
CLN3-246ENST00000636228 IFNA1P01562 189 aa10.26□□□□□ -0.77
CLN3-246ENST00000636228 AP5S1Q9NUS5 200 aa10.26□□□□□ -0.77
CLN3-246ENST00000636228 GAGE12HA6NDE8 117 aa10.25□□□□□ -0.77
CLN3-246ENST00000636228 UBE2L6O14933 153 aa10.25□□□□□ -0.77
CLN3-246ENST00000636228 AMTP48728 403 aa10.25□□□□□ -0.77
CLN3-246ENST00000636228 DPH3P1Q9H4G8 78 aa10.25□□□□□ -0.77
CLN3-246ENST00000636228 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.24□□□□□ -0.77
CLN3-246ENST00000636228 F2Z2F3 143 aa10.24□□□□□ -0.77
CLN3-246ENST00000636228 TRGC1P0CF51 173 aa10.24□□□□□ -0.77
CLN3-246ENST00000636228 COTL1Q14019 142 aa10.24□□□□□ -0.77
CLN3-246ENST00000636228 SPACA4Q8TDM5 124 aa10.24□□□□□ -0.77
CLN3-246ENST00000636228 PGLYRP4Q96LB8 373 aa10.24□□□□□ -0.77
CLN3-246ENST00000636228 MED9Q9NWA0 146 aa10.24□□□□□ -0.77
CLN3-246ENST00000636228 TRAV26-2A0A0B4J265 109 aa10.23□□□□□ -0.77
CLN3-246ENST00000636228 XKRY2A2RUG3 117 aa10.23□□□□□ -0.77
CLN3-246ENST00000636228 HIGD2BQ4VC39 106 aa10.23□□□□□ -0.77
CLN3-246ENST00000636228 Q6ZRU5 148 aa10.23□□□□□ -0.77
CLN3-246ENST00000636228 C15orf56Q8N910 161 aa10.23□□□□□ -0.77
CLN3-246ENST00000636228 NUDT10Q8NFP7 164 aa10.23□□□□□ -0.77
CLN3-246ENST00000636228 NUDT11Q96G61 164 aa10.23□□□□□ -0.77
CLN3-246ENST00000636228 MEF2BQ02080 365 aaPredicted RBP10.22□□□□□ -0.77
CLN3-246ENST00000636228 COX6A2Q02221 97 aa10.22□□□□□ -0.77
CLN3-246ENST00000636228 TWIST1Q15672 202 aa10.22□□□□□ -0.77
CLN3-246ENST00000636228 WDR73Q6P4I2 378 aa10.22□□□□□ -0.77
CLN3-246ENST00000636228 GATD1Q8NB37 220 aa10.22□□□□□ -0.77
CLN3-246ENST00000636228 PHOX2AO14813 284 aa10.21□□□□□ -0.77
CLN3-246ENST00000636228 PDE6DO43924 150 aa10.21□□□□□ -0.77
CLN3-246ENST00000636228 FOXA3P55318 350 aaPredicted RBP10.21□□□□□ -0.77
CLN3-246ENST00000636228 RPL39LQ96EH5 51 aaKnown RBP10.21□□□□□ -0.77
CLN3-246ENST00000636228 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.2□□□□□ -0.78
CLN3-246ENST00000636228 IGKV2-29A2NJV5 120 aaPredicted RBP10.2□□□□□ -0.78
CLN3-246ENST00000636228 BCL2P10415 239 aa10.2□□□□□ -0.78
CLN3-246ENST00000636228 PRSS3P2Q8NHM4 247 aa10.2□□□□□ -0.78
CLN3-246ENST00000636228 SMIM12Q96EX1 92 aa10.2□□□□□ -0.78
CLN3-246ENST00000636228 RNF185Q96GF1 192 aa10.2□□□□□ -0.78
CLN3-246ENST00000636228 RNASE7Q9H1E1 156 aaKnown RBP10.2□□□□□ -0.78
CLN3-246ENST00000636228 PLAC8Q9NZF1 115 aa10.2□□□□□ -0.78
CLN3-246ENST00000636228 IGKV2-24A0A0C4DH68 120 aa10.19□□□□□ -0.78
CLN3-246ENST00000636228 CTRLP40313 264 aa10.19□□□□□ -0.78
CLN3-246ENST00000636228 MAJINQ3KP22 176 aa10.19□□□□□ -0.78
CLN3-246ENST00000636228 K7EN84 100 aa10.18□□□□□ -0.78
CLN3-246ENST00000636228 TAGLN2P37802 199 aaKnown RBP10.18□□□□□ -0.78
CLN3-246ENST00000636228 RPS10P46783 165 aaKnown RBP10.18□□□□□ -0.78
CLN3-246ENST00000636228 CLLU1Q5K131 121 aa10.18□□□□□ -0.78
CLN3-246ENST00000636228 AMMECR1LQ6DCA0 310 aa10.18□□□□□ -0.78
CLN3-246ENST00000636228 RNASEKQ6P5S7 137 aaKnown RBP10.18□□□□□ -0.78
CLN3-246ENST00000636228 CFAP161Q6P656 301 aa10.18□□□□□ -0.78
CLN3-246ENST00000636228 GTSF1Q8WW33 167 aa10.18□□□□□ -0.78
CLN3-246ENST00000636228 CHCHD10Q8WYQ3 142 aaPredicted RBP10.18□□□□□ -0.78
CLN3-246ENST00000636228 BIN3Q9NQY0 253 aa10.18□□□□□ -0.78
CLN3-246ENST00000636228 RAB14P61106 215 aa10.17□□□□□ -0.78
CLN3-246ENST00000636228 FAM210AQ96ND0 272 aa10.17□□□□□ -0.78
CLN3-246ENST00000636228 RPP21Q9H633 154 aaKnown RBP10.17□□□□□ -0.78
CLN3-246ENST00000636228 NDUFS6O75380 124 aaKnown RBP10.16□□□□□ -0.78
CLN3-246ENST00000636228 ODF1Q14990 250 aa10.16□□□□□ -0.78
CLN3-246ENST00000636228 OCC1Q8TAD7 63 aa10.16□□□□□ -0.78
CLN3-246ENST00000636228 C7orf33Q8WU49 177 aa10.16□□□□□ -0.78
CLN3-246ENST00000636228 TNXBP22105 4242 aa10.16□□□□□ -0.78
CLN3-246ENST00000636228 FGF6P10767 208 aa10.15□□□□□ -0.78
CLN3-246ENST00000636228 STPG4Q8N801 248 aa10.15□□□□□ -0.78
CLN3-246ENST00000636228 CNFNQ9BYD5 112 aa10.15□□□□□ -0.78
CLN3-246ENST00000636228 FOXI1Q12951 378 aa10.14□□□□□ -0.79
CLN3-246ENST00000636228 LINC00526Q96FQ7 95 aa10.14□□□□□ -0.79
CLN3-246ENST00000636228 A0A096LNI7 61 aa10.13□□□□□ -0.79
CLN3-246ENST00000636228 SDHAF1A6NFY7 115 aa10.13□□□□□ -0.79
CLN3-246ENST00000636228 GAS8-AS1O95177 125 aa10.13□□□□□ -0.79
CLN3-246ENST00000636228 APCSP02743 223 aa10.13□□□□□ -0.79
CLN3-246ENST00000636228 XCL1P47992 114 aa10.13□□□□□ -0.79
CLN3-246ENST00000636228 RNF213Q63HN8 5207 aa10.12□□□□□ -0.79
CLN3-246ENST00000636228 GVQW2A0A096LPI5 108 aaPredicted RBP10.12□□□□□ -0.79
CLN3-246ENST00000636228 TMEM250H0YL14 139 aa10.12□□□□□ -0.79
CLN3-246ENST00000636228 NCR2O95944 276 aa10.12□□□□□ -0.79
CLN3-246ENST00000636228 PMCHP20382 165 aa10.12□□□□□ -0.79
CLN3-246ENST00000636228 PRR3P79522 188 aaKnown RBP10.12□□□□□ -0.79
CLN3-246ENST00000636228 EIF5A2Q9GZV4 153 aaKnown RBP10.12□□□□□ -0.79
CLN3-246ENST00000636228 FAM231BA6NCW3 169 aa10.11□□□□□ -0.79
CLN3-246ENST00000636228 SMIM15Q7Z3B0 74 aa10.11□□□□□ -0.79
CLN3-246ENST00000636228 H7C423 109 aa10.1□□□□□ -0.79
CLN3-246ENST00000636228 CCL25O15444 150 aa10.1□□□□□ -0.79
CLN3-246ENST00000636228 GATCO43716 136 aaKnown RBP10.1□□□□□ -0.79
CLN3-246ENST00000636228 SRP19P09132 144 aaKnown RBP10.1□□□□□ -0.79
CLN3-246ENST00000636228 SRSF3P84103 164 aaKnown RBP10.1□□□□□ -0.79
CLN3-246ENST00000636228 OR5A1Q8NGJ0 315 aa10.1□□□□□ -0.79
CLN3-246ENST00000636228 LRP2P98164 4655 aa10.1□□□□□ -0.79
CLN3-246ENST00000636228 LINC00959A0A1B0GUT2 108 aa10.09□□□□□ -0.79
CLN3-246ENST00000636228 I3L3M4 83 aa10.09□□□□□ -0.79
CLN3-246ENST00000636228 LINC01600Q96MT4 127 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms