RNA–Protein interactions for RNA: ENST00000621897.1

BRCA1-229, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-229ENST00000621897 TOP2BQ02880 1626 aa1.88□□□□□ -2.11
BRCA1-229ENST00000621897 ABCA9Q8IUA7 1624 aa1.88□□□□□ -2.11
BRCA1-229ENST00000621897 RP1P56715 2156 aa1.88□□□□□ -2.11
BRCA1-229ENST00000621897 EFCAB5A4FU69 1503 aa1.88□□□□□ -2.11
BRCA1-229ENST00000621897 DUOX2Q9NRD8 1548 aa1.88□□□□□ -2.11
BRCA1-229ENST00000621897 TMEM30CPA0ZSE6 113 aa1.88□□□□□ -2.11
BRCA1-229ENST00000621897 UBE2D3P61077 147 aa1.88□□□□□ -2.11
BRCA1-229ENST00000621897 SNRPFP62306 86 aaKnown RBP1.88□□□□□ -2.11
BRCA1-229ENST00000621897 UBE2D2P62837 147 aa1.88□□□□□ -2.11
BRCA1-229ENST00000621897 KLKP1Q107X0 134 aa1.88□□□□□ -2.11
BRCA1-229ENST00000621897 SPATA45Q537H7 98 aa1.88□□□□□ -2.11
BRCA1-229ENST00000621897 C1orf137Q5JT78 98 aa1.88□□□□□ -2.11
BRCA1-229ENST00000621897 CYP2G1PQ6ZSU1 146 aa1.88□□□□□ -2.11
BRCA1-229ENST00000621897 C18orf32Q8TCD1 76 aa1.88□□□□□ -2.11
BRCA1-229ENST00000621897 C4orf3Q8WVX3 66 aa1.88□□□□□ -2.11
BRCA1-229ENST00000621897 ZGRF1Q86YA3 2104 aa1.88□□□□□ -2.11
BRCA1-229ENST00000621897 CACNA1DQ01668 2161 aa1.88□□□□□ -2.11
BRCA1-229ENST00000621897 OTOGLQ3ZCN5 2332 aa1.88□□□□□ -2.11
BRCA1-229ENST00000621897 ZFHX2Q9C0A1 2572 aaPredicted RBP1.87□□□□□ -2.11
BRCA1-229ENST00000621897 TRAV23DV6A0A075B6W5 121 aa1.87□□□□□ -2.11
BRCA1-229ENST00000621897 TRAV12-3A0A0B4J271 114 aa1.87□□□□□ -2.11
BRCA1-229ENST00000621897 F2Z2F3 143 aa1.87□□□□□ -2.11
BRCA1-229ENST00000621897 ACYP1P07311 99 aa1.87□□□□□ -2.11
BRCA1-229ENST00000621897 RGPD1P0DJD0 1748 aa1.87□□□□□ -2.11
BRCA1-229ENST00000621897 PRB4P10163 310 aaPredicted RBP1.87□□□□□ -2.11
BRCA1-229ENST00000621897 HRES1P13985 223 aa1.87□□□□□ -2.11
BRCA1-229ENST00000621897 SMIM11AP58511 58 aa1.87□□□□□ -2.11
BRCA1-229ENST00000621897 CNBPP62633 177 aaKnown RBP1.87□□□□□ -2.11
BRCA1-229ENST00000621897 TIAM1Q13009 1591 aa1.87□□□□□ -2.11
BRCA1-229ENST00000621897 PMCHL1Q16048 86 aa1.87□□□□□ -2.11
BRCA1-229ENST00000621897 CLECL1Q8IZS7 167 aa1.87□□□□□ -2.11
BRCA1-229ENST00000621897 ODF3Q96PU9 254 aa1.87□□□□□ -2.11
BRCA1-229ENST00000621897 HIGD1BQ9P298 99 aa1.87□□□□□ -2.11
BRCA1-229ENST00000621897 PRO1854Q9UHT4 67 aa1.87□□□□□ -2.11
BRCA1-229ENST00000621897 ARFGEF2Q9Y6D5 1785 aa1.87□□□□□ -2.11
BRCA1-229ENST00000621897 MADDQ8WXG6 1647 aa1.87□□□□□ -2.11
BRCA1-229ENST00000621897 HEATR1Q9H583 2144 aaKnown RBP1.87□□□□□ -2.11
BRCA1-229ENST00000621897 LMTK2Q8IWU2 1503 aa1.86□□□□□ -2.11
BRCA1-229ENST00000621897 SEC16AO15027 2179 aa1.86□□□□□ -2.11
BRCA1-229ENST00000621897 BAZ2BQ9UIF8 2168 aaKnown RBP1.86□□□□□ -2.11
BRCA1-229ENST00000621897 TRBV7-3A0A075B6L6 115 aa1.86□□□□□ -2.11
BRCA1-229ENST00000621897 H3BUT2 72 aa1.86□□□□□ -2.11
BRCA1-229ENST00000621897 UBE2D1P51668 147 aa1.86□□□□□ -2.11
BRCA1-229ENST00000621897 ELOBQ15370 118 aa1.86□□□□□ -2.11
BRCA1-229ENST00000621897 CFAP126Q5VTH2 177 aa1.86□□□□□ -2.11
BRCA1-229ENST00000621897 Q5VV11 94 aa1.86□□□□□ -2.11
BRCA1-229ENST00000621897 IFI27L1Q96BM0 104 aa1.86□□□□□ -2.11
BRCA1-229ENST00000621897 DMAC1Q96GE9 116 aa1.86□□□□□ -2.11
BRCA1-229ENST00000621897 CCL26Q9Y258 94 aa1.86□□□□□ -2.11
BRCA1-229ENST00000621897 MED13Q9UHV7 2174 aa1.86□□□□□ -2.11
BRCA1-229ENST00000621897 DOCK11Q5JSL3 2073 aa1.86□□□□□ -2.11
BRCA1-229ENST00000621897 A0A0G2JND7 137 aa1.85□□□□□ -2.11
BRCA1-229ENST00000621897 A0A0J9YY99 117 aa1.85□□□□□ -2.11
BRCA1-229ENST00000621897 CTSGP08311 255 aa1.85□□□□□ -2.11
BRCA1-229ENST00000621897 COX6CP09669 75 aa1.85□□□□□ -2.11
BRCA1-229ENST00000621897 Q8N6K4 173 aa1.85□□□□□ -2.11
BRCA1-229ENST00000621897 PATE1Q8WXA2 126 aa1.85□□□□□ -2.11
BRCA1-229ENST00000621897 LIMD2Q9BT23 127 aa1.85□□□□□ -2.11
BRCA1-229ENST00000621897 MANBALQ9NQG1 85 aa1.85□□□□□ -2.11
BRCA1-229ENST00000621897 ORMDL1Q9P0S3 153 aa1.85□□□□□ -2.11
BRCA1-229ENST00000621897 DLG5Q8TDM6 1919 aa1.85□□□□□ -2.11
BRCA1-229ENST00000621897 PDCD11Q14690 1871 aaKnown RBP1.84□□□□□ -2.11
BRCA1-229ENST00000621897 BRWD1Q9NSI6 2320 aa1.84□□□□□ -2.11
BRCA1-229ENST00000621897 MYOM1P52179 1685 aa1.84□□□□□ -2.11
BRCA1-229ENST00000621897 ITSN1Q15811 1721 aa1.84□□□□□ -2.11
BRCA1-229ENST00000621897 A0A087WWC5 75 aa1.84□□□□□ -2.11
BRCA1-229ENST00000621897 TRAV22A0A0B4J277 110 aa1.84□□□□□ -2.11
BRCA1-229ENST00000621897 NUPR2A6NF83 97 aa1.84□□□□□ -2.11
BRCA1-229ENST00000621897 EFNA4P52798 201 aa1.84□□□□□ -2.11
BRCA1-229ENST00000621897 TMEM170BQ5T4T1 132 aa1.84□□□□□ -2.11
BRCA1-229ENST00000621897 CSAG1Q6PB30 78 aa1.84□□□□□ -2.11
BRCA1-229ENST00000621897 LINC00643Q86TS7 51 aa1.84□□□□□ -2.11
BRCA1-229ENST00000621897 AFDNP55196 1824 aaKnown RBP1.84□□□□□ -2.12
BRCA1-229ENST00000621897 LRRC37A3O60309 1634 aa1.84□□□□□ -2.12
BRCA1-229ENST00000621897 RAPGEF6Q8TEU7 1601 aa1.84□□□□□ -2.12
BRCA1-229ENST00000621897 MED12Q93074 2177 aa1.83□□□□□ -2.12
BRCA1-229ENST00000621897 SPAG17Q6Q759 2223 aa1.83□□□□□ -2.12
BRCA1-229ENST00000621897 NRXN2Q9P2S2 1712 aa1.83□□□□□ -2.12
BRCA1-229ENST00000621897 CR1P17927 2039 aa1.83□□□□□ -2.12
BRCA1-229ENST00000621897 HMGXB3Q12766 1538 aa1.83□□□□□ -2.12
BRCA1-229ENST00000621897 TRBV25-1A0A075B6N4 114 aa1.83□□□□□ -2.12
BRCA1-229ENST00000621897 SDHAF1A6NFY7 115 aa1.83□□□□□ -2.12
BRCA1-229ENST00000621897 IGHV3-30P01768 117 aa1.83□□□□□ -2.12
BRCA1-229ENST00000621897 TFF1P04155 84 aa1.83□□□□□ -2.12
BRCA1-229ENST00000621897 IGHV3-30-5P0DP03 117 aa1.83□□□□□ -2.12
BRCA1-229ENST00000621897 GNGT1P63211 74 aa1.83□□□□□ -2.12
BRCA1-229ENST00000621897 PYDC2Q56P42 97 aa1.83□□□□□ -2.12
BRCA1-229ENST00000621897 C10orf128Q5T292 105 aa1.83□□□□□ -2.12
BRCA1-229ENST00000621897 BPESC1Q9GZL8 116 aa1.83□□□□□ -2.12
BRCA1-229ENST00000621897 KIF1AQ12756 1690 aa1.83□□□□□ -2.12
BRCA1-229ENST00000621897 COL5A3P25940 1745 aaPredicted RBP1.83□□□□□ -2.12
BRCA1-229ENST00000621897 PI4KAP42356 2102 aa1.82□□□□□ -2.12
BRCA1-229ENST00000621897 MAP2P11137 1827 aaKnown RBP1.82□□□□□ -2.12
BRCA1-229ENST00000621897 SIP14410 1827 aa1.82□□□□□ -2.12
BRCA1-229ENST00000621897 LAMA4Q16363 1823 aa1.82□□□□□ -2.12
BRCA1-229ENST00000621897 URB2Q14146 1524 aaKnown RBP1.82□□□□□ -2.12
BRCA1-229ENST00000621897 IGKV3-7A0A075B6H7 116 aa1.82□□□□□ -2.12
BRCA1-229ENST00000621897 TEX49A0A1B0GTD5 131 aa1.82□□□□□ -2.12
BRCA1-229ENST00000621897 TMEM14DPA8MWL7 114 aa1.82□□□□□ -2.12
BRCA1-229ENST00000621897 EDDM3BP56851 147 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 125.1 ms