RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 DUX3Q96PT4 197 aa8.07□□□□□ -1.12
UPF3A-212ENST00000619079 GNRH2O43555 120 aa8.07□□□□□ -1.12
UPF3A-212ENST00000619079 PRSS2P07478 247 aa8.07□□□□□ -1.12
UPF3A-212ENST00000619079 C5orf47Q569G3 176 aa8.07□□□□□ -1.12
UPF3A-212ENST00000619079 LINC00643Q86TS7 51 aa8.07□□□□□ -1.12
UPF3A-212ENST00000619079 LRRC75A-AS1Q8N1F1 130 aa8.07□□□□□ -1.12
UPF3A-212ENST00000619079 ANKRD17O75179 2603 aaKnown RBP8.06□□□□□ -1.12
UPF3A-212ENST00000619079 SETXQ7Z333 2677 aaKnown RBP8.06□□□□□ -1.12
UPF3A-212ENST00000619079 A0A1B0GX51 115 aa8.06□□□□□ -1.12
UPF3A-212ENST00000619079 MIAQ16674 131 aa8.06□□□□□ -1.12
UPF3A-212ENST00000619079 LINC00526Q96FQ7 95 aa8.06□□□□□ -1.12
UPF3A-212ENST00000619079 LITAFQ99732 161 aa8.06□□□□□ -1.12
UPF3A-212ENST00000619079 TIMM21Q9BVV7 248 aa8.06□□□□□ -1.12
UPF3A-212ENST00000619079 CSDC2Q9Y534 153 aaKnown RBP8.06□□□□□ -1.12
UPF3A-212ENST00000619079 CCDC168Q8NDH2 2452 aa8.06□□□□□ -1.12
UPF3A-212ENST00000619079 J3KT08 172 aa8.05□□□□□ -1.12
UPF3A-212ENST00000619079 IGHV3-64A0A075B6Q5 118 aa8.05□□□□□ -1.12
UPF3A-212ENST00000619079 IGHV3-30-3P0DP02 117 aa8.05□□□□□ -1.12
UPF3A-212ENST00000619079 ID1P41134 155 aa8.05□□□□□ -1.12
UPF3A-212ENST00000619079 WNK2Q9Y3S1 2297 aa8.05□□□□□ -1.12
UPF3A-212ENST00000619079 ATP6V0E1O15342 81 aa8.04□□□□□ -1.12
UPF3A-212ENST00000619079 LINC00694P0DN24 101 aa8.04□□□□□ -1.12
UPF3A-212ENST00000619079 TMEM61Q8N0U2 210 aa8.04□□□□□ -1.12
UPF3A-212ENST00000619079 C20orf203Q8NBC4 194 aa8.04□□□□□ -1.12
UPF3A-212ENST00000619079 NPFFO15130 113 aa8.04□□□□□ -1.12
UPF3A-212ENST00000619079 CXCL5P42830 114 aa8.04□□□□□ -1.12
UPF3A-212ENST00000619079 CLEC2BQ92478 149 aa8.04□□□□□ -1.12
UPF3A-212ENST00000619079 A0A087WWL8 130 aa8.03□□□□□ -1.12
UPF3A-212ENST00000619079 A0A0J9YXV3 536 aa8.03□□□□□ -1.12
UPF3A-212ENST00000619079 I3L3M4 83 aa8.03□□□□□ -1.12
UPF3A-212ENST00000619079 SOCS3O14543 225 aa8.03□□□□□ -1.12
UPF3A-212ENST00000619079 MAP1AP78559 2803 aaPredicted RBP8.03□□□□□ -1.12
UPF3A-212ENST00000619079 TIMM17BO60830 172 aa8.03□□□□□ -1.12
UPF3A-212ENST00000619079 C3orf56Q8N813 242 aa8.03□□□□□ -1.12
UPF3A-212ENST00000619079 IGLV4-3A0A075B6K6 122 aa8.02□□□□□ -1.13
UPF3A-212ENST00000619079 IGHV1-58A0A0C4DH39 117 aa8.02□□□□□ -1.13
UPF3A-212ENST00000619079 HERVK_113P63121 156 aa8.02□□□□□ -1.13
UPF3A-212ENST00000619079 NDUFA12Q9UI09 145 aa8.02□□□□□ -1.13
UPF3A-212ENST00000619079 TRAV8-3A0A0A6YYJ7 113 aa8.02□□□□□ -1.13
UPF3A-212ENST00000619079 FAM223BA6NKX1 122 aa8.02□□□□□ -1.13
UPF3A-212ENST00000619079 RPS28P62857 69 aaKnown RBP8.02□□□□□ -1.13
UPF3A-212ENST00000619079 MRPS36P82909 103 aaKnown RBP8.02□□□□□ -1.13
UPF3A-212ENST00000619079 FAM223AQ8IWN6 122 aa8.02□□□□□ -1.13
UPF3A-212ENST00000619079 OPRPNQ99935 248 aaPredicted RBP8.02□□□□□ -1.13
UPF3A-212ENST00000619079 PIMREGQ9BSJ6 248 aa8.02□□□□□ -1.13
UPF3A-212ENST00000619079 KLLNB2CW77 178 aa8.01□□□□□ -1.13
UPF3A-212ENST00000619079 M0QY20 66 aa8.01□□□□□ -1.13
UPF3A-212ENST00000619079 DEFB104AQ8WTQ1 72 aa8.01□□□□□ -1.13
UPF3A-212ENST00000619079 Q96MF0 132 aa8.01□□□□□ -1.13
UPF3A-212ENST00000619079 SPXQ9BT56 116 aa8.01□□□□□ -1.13
UPF3A-212ENST00000619079 BPESC1Q9GZL8 116 aa8.01□□□□□ -1.13
UPF3A-212ENST00000619079 PYGO1Q9Y3Y4 419 aa8.01□□□□□ -1.13
UPF3A-212ENST00000619079 DSCR9P59020 149 aa8.01□□□□□ -1.13
UPF3A-212ENST00000619079 DCANP1Q8TF63 244 aa8.01□□□□□ -1.13
UPF3A-212ENST00000619079 JPT2Q9H910 190 aa8.01□□□□□ -1.13
UPF3A-212ENST00000619079 LINC00527Q9UJ94 153 aa8.01□□□□□ -1.13
UPF3A-212ENST00000619079 PDZD2O15018 2839 aa8.01□□□□□ -1.13
UPF3A-212ENST00000619079 IGHV4-30-2A0A087WSY4 118 aa8□□□□□ -1.13
UPF3A-212ENST00000619079 CYSRT1A8MQ03 144 aa8□□□□□ -1.13
UPF3A-212ENST00000619079 NDUFA4O00483 81 aa8□□□□□ -1.13
UPF3A-212ENST00000619079 COX7CP15954 63 aa8□□□□□ -1.13
UPF3A-212ENST00000619079 FAM74A4Q5TZK3 123 aa8□□□□□ -1.13
UPF3A-212ENST00000619079 SDIM1Q6ZPB5 146 aa8□□□□□ -1.13
UPF3A-212ENST00000619079 TMEM219Q86XT9 240 aa8□□□□□ -1.13
UPF3A-212ENST00000619079 WFDC11Q8NEX6 87 aa8□□□□□ -1.13
UPF3A-212ENST00000619079 AKAP9Q99996 3911 aa8□□□□□ -1.13
UPF3A-212ENST00000619079 ADARB2-AS1A8MUL3 147 aa8□□□□□ -1.13
UPF3A-212ENST00000619079 G3V318 75 aa8□□□□□ -1.13
UPF3A-212ENST00000619079 ADAMTSL4-AS1Q5T5F5 129 aa8□□□□□ -1.13
UPF3A-212ENST00000619079 PEMTQ9UBM1 199 aa8□□□□□ -1.13
UPF3A-212ENST00000619079 PRRC2AP48634 2157 aaKnown RBP8□□□□□ -1.13
UPF3A-212ENST00000619079 SMIM9A6NGZ8 99 aa7.99□□□□□ -1.13
UPF3A-212ENST00000619079 CD28P10747 220 aa7.99□□□□□ -1.13
UPF3A-212ENST00000619079 CEMP1Q6PRD7 247 aaPredicted RBP7.99□□□□□ -1.13
UPF3A-212ENST00000619079 OR13C6PQ8NH95 151 aa7.99□□□□□ -1.13
UPF3A-212ENST00000619079 C10orf105Q8TEF2 133 aa7.99□□□□□ -1.13
UPF3A-212ENST00000619079 VSIG2Q96IQ7 327 aa7.99□□□□□ -1.13
UPF3A-212ENST00000619079 ZNF580Q9UK33 172 aa7.99□□□□□ -1.13
UPF3A-212ENST00000619079 MUC4Q99102 2169 aa7.99□□□□□ -1.13
UPF3A-212ENST00000619079 ATOX1O00244 68 aa7.99□□□□□ -1.13
UPF3A-212ENST00000619079 CRYGAP11844 174 aa7.99□□□□□ -1.13
UPF3A-212ENST00000619079 RPL11P62913 178 aaKnown RBP7.99□□□□□ -1.13
UPF3A-212ENST00000619079 C5orf38Q86SI9 138 aa7.99□□□□□ -1.13
UPF3A-212ENST00000619079 DAND5Q8N907 189 aa7.99□□□□□ -1.13
UPF3A-212ENST00000619079 COPS9Q8WXC6 57 aa7.99□□□□□ -1.13
UPF3A-212ENST00000619079 COX7A2LO14548 114 aa7.98□□□□□ -1.13
UPF3A-212ENST00000619079 GAGE2AQ6NT46 116 aa7.98□□□□□ -1.13
UPF3A-212ENST00000619079 C9orf85Q96MD7 179 aa7.98□□□□□ -1.13
UPF3A-212ENST00000619079 CREBBPQ92793 2442 aa7.98□□□□□ -1.13
UPF3A-212ENST00000619079 TEX15Q9BXT5 2789 aa7.98□□□□□ -1.13
UPF3A-212ENST00000619079 F6UB75 175 aa7.98□□□□□ -1.13
UPF3A-212ENST00000619079 INAFM2P0DMQ5 153 aa7.98□□□□□ -1.13
UPF3A-212ENST00000619079 MAPK1IP1LQ8NDC0 245 aa7.98□□□□□ -1.13
UPF3A-212ENST00000619079 MYO9AB2RTY4 2548 aa7.98□□□□□ -1.13
UPF3A-212ENST00000619079 TINCRA0A1B0GVN0 87 aa7.97□□□□□ -1.13
UPF3A-212ENST00000619079 CIRBPQ14011 172 aaKnown RBP7.97□□□□□ -1.13
UPF3A-212ENST00000619079 KRTAP1-3Q8IUG1 177 aa7.97□□□□□ -1.13
UPF3A-212ENST00000619079 SMCR5Q8TEV8 140 aa7.97□□□□□ -1.13
UPF3A-212ENST00000619079 ARHGAP32A7KAX9 2087 aa7.97□□□□□ -1.13
UPF3A-212ENST00000619079 ZNF469Q96JG9 3925 aaPredicted RBP7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms