RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 IGKV2D-26A0A0A0MRZ7 120 aa10.58□□□□□ -0.72
CPSF1-212ENST00000616140 LGALS9O00182 355 aa10.58□□□□□ -0.72
CPSF1-212ENST00000616140 LECT2O14960 151 aa10.58□□□□□ -0.72
CPSF1-212ENST00000616140 EBI3Q14213 229 aa10.58□□□□□ -0.72
CPSF1-212ENST00000616140 DEFB135Q30KP9 77 aa10.58□□□□□ -0.72
CPSF1-212ENST00000616140 MRAPQ8TCY5 172 aa10.58□□□□□ -0.72
CPSF1-212ENST00000616140 FLNBO75369 2602 aaKnown RBP10.58□□□□□ -0.72
CPSF1-212ENST00000616140 POLQO75417 2590 aa10.57□□□□□ -0.72
CPSF1-212ENST00000616140 IGHV3-30P01768 117 aa10.57□□□□□ -0.72
CPSF1-212ENST00000616140 IGHV3-33P01772 117 aa10.57□□□□□ -0.72
CPSF1-212ENST00000616140 IGHV3-30-5P0DP03 117 aa10.57□□□□□ -0.72
CPSF1-212ENST00000616140 hADV29S1A0JD25 119 aa10.57□□□□□ -0.72
CPSF1-212ENST00000616140 IGKV3D-7A0A0C4DH55 119 aa10.56□□□□□ -0.72
CPSF1-212ENST00000616140 TRBV10-2A0A0K0K1G8 114 aa10.56□□□□□ -0.72
CPSF1-212ENST00000616140 K7EQG2 157 aa10.56□□□□□ -0.72
CPSF1-212ENST00000616140 MAP6D1Q9H9H5 199 aa10.56□□□□□ -0.72
CPSF1-212ENST00000616140 NUP210LQ5VU65 1888 aa10.56□□□□□ -0.72
CPSF1-212ENST00000616140 G3V4G9 280 aa10.56□□□□□ -0.72
CPSF1-212ENST00000616140 FSTL3O95633 263 aa10.56□□□□□ -0.72
CPSF1-212ENST00000616140 ZFAND2AQ8N6M9 145 aa10.56□□□□□ -0.72
CPSF1-212ENST00000616140 TRBV10-1A0A0K0K1A3 114 aa10.56□□□□□ -0.72
CPSF1-212ENST00000616140 IGLV2-11P01706 119 aa10.56□□□□□ -0.72
CPSF1-212ENST00000616140 C20orf173Q96LM9 149 aa10.56□□□□□ -0.72
CPSF1-212ENST00000616140 H3BT86 120 aa10.56□□□□□ -0.72
CPSF1-212ENST00000616140 SMAD5-AS1Q9Y6J3 95 aa10.56□□□□□ -0.72
CPSF1-212ENST00000616140 TMEM263Q8WUH6 116 aaKnown RBP10.55□□□□□ -0.72
CPSF1-212ENST00000616140 C4orf3Q8WVX3 66 aa10.55□□□□□ -0.72
CPSF1-212ENST00000616140 Q6ZTI0 123 aa10.54□□□□□ -0.72
CPSF1-212ENST00000616140 FAM236AA0A1B0GUQ0 79 aa10.54□□□□□ -0.72
CPSF1-212ENST00000616140 FAM236BA0A1B0GV22 79 aa10.54□□□□□ -0.72
CPSF1-212ENST00000616140 SS18L2Q9UHA2 77 aa10.54□□□□□ -0.72
CPSF1-212ENST00000616140 NEXN-AS1Q8NBZ9 246 aa10.54□□□□□ -0.72
CPSF1-212ENST00000616140 CEP350Q5VT06 3117 aa10.54□□□□□ -0.72
CPSF1-212ENST00000616140 UBE2BP63146 152 aa10.54□□□□□ -0.72
CPSF1-212ENST00000616140 KLK12Q9UKR0 248 aa10.54□□□□□ -0.72
CPSF1-212ENST00000616140 A0A0J9YXY3 114 aa10.53□□□□□ -0.72
CPSF1-212ENST00000616140 TCL1BO95988 128 aa10.53□□□□□ -0.72
CPSF1-212ENST00000616140 TM2D2Q9BX73 214 aa10.53□□□□□ -0.72
CPSF1-212ENST00000616140 CDKN2A-AS1Q9UH64 79 aa10.53□□□□□ -0.72
CPSF1-212ENST00000616140 MAPKAPK5-AS1Q8N8E1 139 aa10.53□□□□□ -0.72
CPSF1-212ENST00000616140 RNF185Q96GF1 192 aa10.52□□□□□ -0.72
CPSF1-212ENST00000616140 A0A0B4J2C4 111 aa10.52□□□□□ -0.73
CPSF1-212ENST00000616140 SPAG11BQ08648 103 aa10.52□□□□□ -0.73
CPSF1-212ENST00000616140 PRO0255Q9UI72 69 aa10.52□□□□□ -0.73
CPSF1-212ENST00000616140 ETDCA0A1B0GVM5 59 aa10.52□□□□□ -0.73
CPSF1-212ENST00000616140 RPL18AQ02543 176 aaKnown RBP10.51□□□□□ -0.73
CPSF1-212ENST00000616140 C10orf99Q6UWK7 81 aa10.51□□□□□ -0.73
CPSF1-212ENST00000616140 NFE4Q86UQ8 179 aa10.51□□□□□ -0.73
CPSF1-212ENST00000616140 MIAQ16674 131 aa10.51□□□□□ -0.73
CPSF1-212ENST00000616140 TNRC6BQ9UPQ9 1833 aaKnown RBP10.51□□□□□ -0.73
CPSF1-212ENST00000616140 MUC22E2RYF6 1773 aaPredicted RBP10.51□□□□□ -0.73
CPSF1-212ENST00000616140 CEP192Q8TEP8 1941 aa10.5□□□□□ -0.73
CPSF1-212ENST00000616140 A0A1B0GX51 115 aa10.5□□□□□ -0.73
CPSF1-212ENST00000616140 RBM3P98179 157 aaKnown RBP10.5□□□□□ -0.73
CPSF1-212ENST00000616140 ODF3Q96PU9 254 aa10.5□□□□□ -0.73
CPSF1-212ENST00000616140 DNAJC9-AS1A6NH13 148 aa10.5□□□□□ -0.73
CPSF1-212ENST00000616140 ZNF22P17026 224 aaPredicted RBP10.5□□□□□ -0.73
CPSF1-212ENST00000616140 CLPSL1A2RUU4 121 aa10.5□□□□□ -0.73
CPSF1-212ENST00000616140 NDUFA1O15239 70 aa10.5□□□□□ -0.73
CPSF1-212ENST00000616140 ZMAT4Q9H898 229 aa10.5□□□□□ -0.73
CPSF1-212ENST00000616140 FUSP35637 526 aaKnown RBP eCLIP10.49□□□□□ -0.73
CPSF1-212ENST00000616140 LINC00467Q9BRT7 94 aa10.49□□□□□ -0.73
CPSF1-212ENST00000616140 IGLV4-3A0A075B6K6 122 aa10.49□□□□□ -0.73
CPSF1-212ENST00000616140 SMIM20Q8N5G0 67 aa10.49□□□□□ -0.73
CPSF1-212ENST00000616140 C11orf21Q9P2W6 132 aa10.49□□□□□ -0.73
CPSF1-212ENST00000616140 IGHV4-28A0A0C4DH34 117 aa10.49□□□□□ -0.73
CPSF1-212ENST00000616140 NCR3O14931 201 aa10.49□□□□□ -0.73
CPSF1-212ENST00000616140 C11orf71Q6IPW1 123 aa10.49□□□□□ -0.73
CPSF1-212ENST00000616140 CITED1Q99966 193 aa10.49□□□□□ -0.73
CPSF1-212ENST00000616140 TRAV26-1A0A087WT03 109 aa10.48□□□□□ -0.73
CPSF1-212ENST00000616140 M0QY20 66 aa10.48□□□□□ -0.73
CPSF1-212ENST00000616140 U3KQK5 164 aa10.48□□□□□ -0.73
CPSF1-212ENST00000616140 DEFB114Q30KQ6 69 aa10.48□□□□□ -0.73
CPSF1-212ENST00000616140 ACANP16112 2415 aa10.48□□□□□ -0.73
CPSF1-212ENST00000616140 LINC00310P59036 64 aa10.48□□□□□ -0.73
CPSF1-212ENST00000616140 CCL18P55774 89 aa10.47□□□□□ -0.73
CPSF1-212ENST00000616140 JMJD7-PLA2G4BH0Y9G9 81 aa10.47□□□□□ -0.73
CPSF1-212ENST00000616140 GAS8-AS1O95177 125 aa10.47□□□□□ -0.73
CPSF1-212ENST00000616140 CXCL5P42830 114 aa10.47□□□□□ -0.73
CPSF1-212ENST00000616140 ATOX1O00244 68 aa10.47□□□□□ -0.73
CPSF1-212ENST00000616140 Q8N6K4 173 aa10.47□□□□□ -0.73
CPSF1-212ENST00000616140 DNAH12Q6ZR08 3092 aa10.46□□□□□ -0.73
CPSF1-212ENST00000616140 SPANXCQ9NY87 97 aa10.46□□□□□ -0.74
CPSF1-212ENST00000616140 PROK1P58294 105 aa10.45□□□□□ -0.74
CPSF1-212ENST00000616140 PRR9Q5T870 116 aa10.45□□□□□ -0.74
CPSF1-212ENST00000616140 Q6YL49 198 aa10.45□□□□□ -0.74
CPSF1-212ENST00000616140 C2orf91Q6ZV80 131 aa10.45□□□□□ -0.74
CPSF1-212ENST00000616140 TRBV27A0A0K0K1C4 114 aa10.45□□□□□ -0.74
CPSF1-212ENST00000616140 TEX49A0A1B0GTD5 131 aa10.45□□□□□ -0.74
CPSF1-212ENST00000616140 RNASE3P12724 160 aaKnown RBP10.45□□□□□ -0.74
CPSF1-212ENST00000616140 HIST2H2BDQ6DRA6 164 aa10.45□□□□□ -0.74
CPSF1-212ENST00000616140 NRACQ8N912 160 aa10.45□□□□□ -0.74
CPSF1-212ENST00000616140 ATG2AQ2TAZ0 1938 aa10.44□□□□□ -0.74
CPSF1-212ENST00000616140 NREPQ16612 68 aa10.44□□□□□ -0.74
CPSF1-212ENST00000616140 WFDC11Q8NEX6 87 aa10.44□□□□□ -0.74
CPSF1-212ENST00000616140 C14orf132Q9NPU4 83 aa10.44□□□□□ -0.74
CPSF1-212ENST00000616140 EPG5Q9HCE0 2579 aa10.44□□□□□ -0.74
CPSF1-212ENST00000616140 SPANXB1Q9NS25 103 aaPredicted RBP10.44□□□□□ -0.74
CPSF1-212ENST00000616140 TMEM223A0PJW6 202 aa10.43□□□□□ -0.74
CPSF1-212ENST00000616140 IGHV4-31P0DP07 118 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms