RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 H3BUA1 57 aa9.38□□□□□ -0.91
LIG1-221ENST00000613670 JMJD1CQ15652 2540 aa9.38□□□□□ -0.91
LIG1-221ENST00000613670 IGLV4-3A0A075B6K6 122 aa9.38□□□□□ -0.91
LIG1-221ENST00000613670 IGHV4OR15-8A0A075B7B6 117 aa9.38□□□□□ -0.91
LIG1-221ENST00000613670 A0A087WW49 117 aa9.38□□□□□ -0.91
LIG1-221ENST00000613670 TRBV7-9A0A0J9YWB2 115 aa9.38□□□□□ -0.91
LIG1-221ENST00000613670 LINC01619G3V211 115 aa9.38□□□□□ -0.91
LIG1-221ENST00000613670 RNASE1P07998 156 aaKnown RBP9.38□□□□□ -0.91
LIG1-221ENST00000613670 TRGV2A0A075B6R0 118 aa9.38□□□□□ -0.91
LIG1-221ENST00000613670 TRBV27A0A0K0K1C4 114 aa9.38□□□□□ -0.91
LIG1-221ENST00000613670 TMEM223A0PJW6 202 aa9.38□□□□□ -0.91
LIG1-221ENST00000613670 GAGE12JA6NER3 117 aa9.38□□□□□ -0.91
LIG1-221ENST00000613670 GAGE7O76087 117 aa9.38□□□□□ -0.91
LIG1-221ENST00000613670 GAGE12FP0CL80 117 aa9.38□□□□□ -0.91
LIG1-221ENST00000613670 GAGE12GP0CL81 117 aa9.38□□□□□ -0.91
LIG1-221ENST00000613670 GAGE12IP0CL82 117 aa9.38□□□□□ -0.91
LIG1-221ENST00000613670 GAGE4Q13068 117 aa9.38□□□□□ -0.91
LIG1-221ENST00000613670 PRRC2AP48634 2157 aaKnown RBP9.38□□□□□ -0.91
LIG1-221ENST00000613670 APRG1Q8IVJ8 170 aa9.37□□□□□ -0.91
LIG1-221ENST00000613670 ZNF575Q86XF7 245 aa9.37□□□□□ -0.91
LIG1-221ENST00000613670 Q9H8V8 135 aa9.37□□□□□ -0.91
LIG1-221ENST00000613670 STHQ8IWL8 128 aa9.37□□□□□ -0.91
LIG1-221ENST00000613670 ABCA12Q86UK0 2595 aa9.37□□□□□ -0.91
LIG1-221ENST00000613670 ZZEF1O43149 2961 aa9.37□□□□□ -0.91
LIG1-221ENST00000613670 TRIAP1O43715 76 aa9.37□□□□□ -0.91
LIG1-221ENST00000613670 UBE2D3P61077 147 aa9.37□□□□□ -0.91
LIG1-221ENST00000613670 UBE2D2P62837 147 aa9.37□□□□□ -0.91
LIG1-221ENST00000613670 SLURP1P55000 103 aa9.36□□□□□ -0.91
LIG1-221ENST00000613670 CFHR3Q02985 330 aa9.36□□□□□ -0.91
LIG1-221ENST00000613670 CDIP1Q9H305 208 aa9.36□□□□□ -0.91
LIG1-221ENST00000613670 C11orf68Q9H3H3 251 aaKnown RBP9.36□□□□□ -0.91
LIG1-221ENST00000613670 A6NDX4 124 aa9.36□□□□□ -0.91
LIG1-221ENST00000613670 KLLNB2CW77 178 aa9.36□□□□□ -0.91
LIG1-221ENST00000613670 TMEM101Q96IK0 257 aa9.36□□□□□ -0.91
LIG1-221ENST00000613670 LGALS9O00182 355 aa9.36□□□□□ -0.91
LIG1-221ENST00000613670 HIST2H2BDQ6DRA6 164 aa9.36□□□□□ -0.91
LIG1-221ENST00000613670 Q6ZSV7 163 aa9.36□□□□□ -0.91
LIG1-221ENST00000613670 LAMA5O15230 3695 aa9.35□□□□□ -0.91
LIG1-221ENST00000613670 TNRC18O15417 2968 aaPredicted RBP9.35□□□□□ -0.91
LIG1-221ENST00000613670 TRBV10-2A0A0K0K1G8 114 aa9.35□□□□□ -0.91
LIG1-221ENST00000613670 LINC00158P58513 81 aa9.35□□□□□ -0.91
LIG1-221ENST00000613670 TRAV4A0A0B4J268 109 aa9.35□□□□□ -0.91
LIG1-221ENST00000613670 RS1O15537 224 aa9.35□□□□□ -0.91
LIG1-221ENST00000613670 COX6B1P14854 86 aa9.35□□□□□ -0.91
LIG1-221ENST00000613670 RPL36AP83881 106 aaKnown RBP9.35□□□□□ -0.91
LIG1-221ENST00000613670 COPS9Q8WXC6 57 aa9.35□□□□□ -0.91
LIG1-221ENST00000613670 RPL36ALQ969Q0 106 aaKnown RBP9.35□□□□□ -0.91
LIG1-221ENST00000613670 PEMTQ9UBM1 199 aa9.35□□□□□ -0.91
LIG1-221ENST00000613670 K7EMT4 169 aa9.35□□□□□ -0.91
LIG1-221ENST00000613670 IGHV1-58A0A0C4DH39 117 aa9.34□□□□□ -0.91
LIG1-221ENST00000613670 SOCS3O14543 225 aa9.34□□□□□ -0.91
LIG1-221ENST00000613670 GAGE2AQ6NT46 116 aa9.34□□□□□ -0.91
LIG1-221ENST00000613670 C10orf105Q8TEF2 133 aa9.34□□□□□ -0.91
LIG1-221ENST00000613670 MTORP42345 2549 aa9.33□□□□□ -0.92
LIG1-221ENST00000613670 A0A0B4J2C4 111 aa9.33□□□□□ -0.92
LIG1-221ENST00000613670 DCANP1Q8TF63 244 aa9.33□□□□□ -0.92
LIG1-221ENST00000613670 INSP01308 110 aa9.33□□□□□ -0.92
LIG1-221ENST00000613670 HIVEP2P31629 2446 aa9.33□□□□□ -0.92
LIG1-221ENST00000613670 RNF223E7ERA6 249 aa9.33□□□□□ -0.92
LIG1-221ENST00000613670 CDKN2A-AS1Q9UH64 79 aa9.33□□□□□ -0.92
LIG1-221ENST00000613670 NSUN5P1Q3KNT7 163 aa9.32□□□□□ -0.92
LIG1-221ENST00000613670 K7EQG2 157 aa9.32□□□□□ -0.92
LIG1-221ENST00000613670 SMIM20Q8N5G0 67 aa9.32□□□□□ -0.92
LIG1-221ENST00000613670 TMEM263Q8WUH6 116 aaKnown RBP9.32□□□□□ -0.92
LIG1-221ENST00000613670 CHCHD5Q9BSY4 110 aa9.32□□□□□ -0.92
LIG1-221ENST00000613670 KIF25-AS1Q9Y6Z4 181 aa9.32□□□□□ -0.92
LIG1-221ENST00000613670 PKD1L2Q7Z442 2459 aa9.32□□□□□ -0.92
LIG1-221ENST00000613670 TRBV6-5A0A0K0K1A5 114 aa9.32□□□□□ -0.92
LIG1-221ENST00000613670 MUC4Q99102 2169 aa9.32□□□□□ -0.92
LIG1-221ENST00000613670 LINC00315P59091 139 aa9.31□□□□□ -0.92
LIG1-221ENST00000613670 CRPP02741 224 aa9.31□□□□□ -0.92
LIG1-221ENST00000613670 NDUFV3P56181 108 aaKnown RBP9.31□□□□□ -0.92
LIG1-221ENST00000613670 GATA3P23771 443 aa9.31□□□□□ -0.92
LIG1-221ENST00000613670 TRGV4A0A0C4DH28 118 aa9.3□□□□□ -0.92
LIG1-221ENST00000613670 PAX4O43316 350 aa9.3□□□□□ -0.92
LIG1-221ENST00000613670 LINC00467Q9BRT7 94 aa9.3□□□□□ -0.92
LIG1-221ENST00000613670 SPANXA1Q9NS26 97 aa9.3□□□□□ -0.92
LIG1-221ENST00000613670 PFN2P35080 140 aa9.3□□□□□ -0.92
LIG1-221ENST00000613670 RPL35AP18077 110 aaKnown RBP9.3□□□□□ -0.92
LIG1-221ENST00000613670 RPL32P62910 135 aaKnown RBP9.3□□□□□ -0.92
LIG1-221ENST00000613670 MIAQ16674 131 aa9.3□□□□□ -0.92
LIG1-221ENST00000613670 TMEM61Q8N0U2 210 aa9.3□□□□□ -0.92
LIG1-221ENST00000613670 LINC01356Q8N9X3 169 aa9.3□□□□□ -0.92
LIG1-221ENST00000613670 C9orf85Q96MD7 179 aa9.29□□□□□ -0.92
LIG1-221ENST00000613670 AVPP01185 164 aa9.29□□□□□ -0.92
LIG1-221ENST00000613670 SMG1Q96Q15 3661 aaKnown RBP9.29□□□□□ -0.92
LIG1-221ENST00000613670 VSIG2Q96IQ7 327 aa9.28□□□□□ -0.92
LIG1-221ENST00000613670 CRLF1O75462 422 aa9.28□□□□□ -0.92
LIG1-221ENST00000613670 ELANEP08246 267 aa9.28□□□□□ -0.92
LIG1-221ENST00000613670 BAALC-AS2P0C853 105 aa9.28□□□□□ -0.92
LIG1-221ENST00000613670 ADAMTSL4-AS1Q5T5F5 129 aa9.28□□□□□ -0.92
LIG1-221ENST00000613670 HERVK_113P63121 156 aa9.27□□□□□ -0.93
LIG1-221ENST00000613670 FHL3Q13643 280 aa9.27□□□□□ -0.93
LIG1-221ENST00000613670 TRBV30A0A0K0K1B3 111 aa9.26□□□□□ -0.93
LIG1-221ENST00000613670 FAM236AA0A1B0GUQ0 79 aa9.26□□□□□ -0.93
LIG1-221ENST00000613670 FAM236BA0A1B0GV22 79 aa9.26□□□□□ -0.93
LIG1-221ENST00000613670 H3BT86 120 aa9.26□□□□□ -0.93
LIG1-221ENST00000613670 CCDC179H3BU77 68 aa9.26□□□□□ -0.93
LIG1-221ENST00000613670 C9orf153Q5TBE3 101 aa9.26□□□□□ -0.93
LIG1-221ENST00000613670 POM121L12Q8N7R1 296 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms