RNA–Protein interactions for RNA: ENST00000590541.1

RETREG3-210, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 409 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-210ENST00000590541 C15orf54Q8N8G6 183 aa11.16□□□□□ -0.62
RETREG3-210ENST00000590541 NIT2Q9NQR4 276 aa11.16□□□□□ -0.62
RETREG3-210ENST00000590541 K7EN84 100 aa11.15□□□□□ -0.62
RETREG3-210ENST00000590541 ENHOQ6UWT2 76 aa11.15□□□□□ -0.62
RETREG3-210ENST00000590541 PGLYRP4Q96LB8 373 aa11.15□□□□□ -0.62
RETREG3-210ENST00000590541 RNASE7Q9H1E1 156 aaKnown RBP11.15□□□□□ -0.62
RETREG3-210ENST00000590541 TWIST1Q15672 202 aa11.14□□□□□ -0.63
RETREG3-210ENST00000590541 FAM231DQ6ZW35 169 aa11.14□□□□□ -0.63
RETREG3-210ENST00000590541 SMIM15Q7Z3B0 74 aa11.14□□□□□ -0.63
RETREG3-210ENST00000590541 PRR34Q9NV39 138 aa11.14□□□□□ -0.63
RETREG3-210ENST00000590541 A8MWL6 223 aa11.13□□□□□ -0.63
RETREG3-210ENST00000590541 GATCO43716 136 aaKnown RBP11.12□□□□□ -0.63
RETREG3-210ENST00000590541 NKX2-5P52952 324 aaPredicted RBP11.12□□□□□ -0.63
RETREG3-210ENST00000590541 RBX1P62877 108 aa11.12□□□□□ -0.63
RETREG3-210ENST00000590541 CT83Q5H943 113 aa11.12□□□□□ -0.63
RETREG3-210ENST00000590541 TEX261Q6UWH6 196 aa11.12□□□□□ -0.63
RETREG3-210ENST00000590541 EIF5A2Q9GZV4 153 aaKnown RBP11.12□□□□□ -0.63
RETREG3-210ENST00000590541 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.12□□□□□ -0.63
RETREG3-210ENST00000590541 A0A1B0GUV1 79 aa11.11□□□□□ -0.63
RETREG3-210ENST00000590541 PANO1I0J062 215 aa11.11□□□□□ -0.63
RETREG3-210ENST00000590541 TMEM243Q9BU79 118 aa11.11□□□□□ -0.63
RETREG3-210ENST00000590541 FOXA3P55318 350 aaPredicted RBP11.1□□□□□ -0.63
RETREG3-210ENST00000590541 GAGE6Q13070 117 aa11.1□□□□□ -0.63
RETREG3-210ENST00000590541 FAM210AQ96ND0 272 aa11.1□□□□□ -0.63
RETREG3-210ENST00000590541 COTL1Q14019 142 aa11.09□□□□□ -0.63
RETREG3-210ENST00000590541 LINC00269Q8N2A0 174 aa11.09□□□□□ -0.63
RETREG3-210ENST00000590541 GTSF1Q8WW33 167 aa11.09□□□□□ -0.63
RETREG3-210ENST00000590541 SMIM7Q9BQ49 75 aa11.09□□□□□ -0.63
RETREG3-210ENST00000590541 TRAV8-4A0A0B4J246 113 aa11.08□□□□□ -0.64
RETREG3-210ENST00000590541 CEBPGP53567 150 aa11.08□□□□□ -0.64
RETREG3-210ENST00000590541 C9orf163Q8N9P6 203 aa11.08□□□□□ -0.64
RETREG3-210ENST00000590541 BORCS7Q96B45 105 aa11.08□□□□□ -0.64
RETREG3-210ENST00000590541 FAM231BA6NCW3 169 aa11.07□□□□□ -0.64
RETREG3-210ENST00000590541 UBE2L6O14933 153 aa11.07□□□□□ -0.64
RETREG3-210ENST00000590541 GATD1Q8NB37 220 aa11.07□□□□□ -0.64
RETREG3-210ENST00000590541 GFRA4Q9GZZ7 299 aa11.07□□□□□ -0.64
RETREG3-210ENST00000590541 ZNF727A8MUV8 499 aa11.06□□□□□ -0.64
RETREG3-210ENST00000590541 USP17L23D6RBM5 183 aa11.06□□□□□ -0.64
RETREG3-210ENST00000590541 NCR2O95944 276 aa11.06□□□□□ -0.64
RETREG3-210ENST00000590541 HLA-DQA1P01909 254 aa11.06□□□□□ -0.64
RETREG3-210ENST00000590541 PRSS1P07477 247 aa11.06□□□□□ -0.64
RETREG3-210ENST00000590541 AMTP48728 403 aa11.06□□□□□ -0.64
RETREG3-210ENST00000590541 REG3AQ06141 175 aa11.06□□□□□ -0.64
RETREG3-210ENST00000590541 DGAT2L7PQ6IED9 249 aa11.06□□□□□ -0.64
RETREG3-210ENST00000590541 LINC01551Q86U37 167 aa11.06□□□□□ -0.64
RETREG3-210ENST00000590541 C20orf203Q8NBC4 194 aa11.05□□□□□ -0.64
RETREG3-210ENST00000590541 CLRN3Q8NCR9 226 aa11.05□□□□□ -0.64
RETREG3-210ENST00000590541 TSKUQ8WUA8 353 aa11.05□□□□□ -0.64
RETREG3-210ENST00000590541 OSTCQ9NRP0 149 aa11.05□□□□□ -0.64
RETREG3-210ENST00000590541 SRP19P09132 144 aaKnown RBP11.04□□□□□ -0.64
RETREG3-210ENST00000590541 ODF1Q14990 250 aa11.04□□□□□ -0.64
RETREG3-210ENST00000590541 FAM74A3Q4VXF1 159 aa11.04□□□□□ -0.64
RETREG3-210ENST00000590541 SDIM1Q6ZPB5 146 aa11.04□□□□□ -0.64
RETREG3-210ENST00000590541 A0A1B0GUT8 65 aa11.03□□□□□ -0.64
RETREG3-210ENST00000590541 H7C423 109 aa11.03□□□□□ -0.64
RETREG3-210ENST00000590541 KRTAP26-1Q6PEX3 210 aa11.03□□□□□ -0.64
RETREG3-210ENST00000590541 CLPSL2Q6UWE3 100 aa11.03□□□□□ -0.64
RETREG3-210ENST00000590541 IGLV4-60A0A075B6I1 120 aa11.02□□□□□ -0.65
RETREG3-210ENST00000590541 TRAV26-2A0A0B4J265 109 aa11.02□□□□□ -0.65
RETREG3-210ENST00000590541 A0A1B0GVG6 124 aa11.02□□□□□ -0.65
RETREG3-210ENST00000590541 HIGD1CA8MV81 97 aa11.02□□□□□ -0.65
RETREG3-210ENST00000590541 TRBV6-5A0A0K0K1A5 114 aa11.01□□□□□ -0.65
RETREG3-210ENST00000590541 CIRBPQ14011 172 aaKnown RBP11.01□□□□□ -0.65
RETREG3-210ENST00000590541 TMEM241Q24JQ0 296 aa11.01□□□□□ -0.65
RETREG3-210ENST00000590541 TMEM191AQ9H0A3 160 aa11.01□□□□□ -0.65
RETREG3-210ENST00000590541 SMDT1Q9H4I9 107 aa11.01□□□□□ -0.65
RETREG3-210ENST00000590541 SDHAF1A6NFY7 115 aa11□□□□□ -0.65
RETREG3-210ENST00000590541 RPL39LQ96EH5 51 aaKnown RBP11□□□□□ -0.65
RETREG3-210ENST00000590541 I3L3M4 83 aa10.99□□□□□ -0.65
RETREG3-210ENST00000590541 APCSP02743 223 aa10.99□□□□□ -0.65
RETREG3-210ENST00000590541 AMMECR1LQ6DCA0 310 aa10.99□□□□□ -0.65
RETREG3-210ENST00000590541 LINC01600Q96MT4 127 aa10.99□□□□□ -0.65
RETREG3-210ENST00000590541 IGLV10-54A0A075B6I4 117 aa10.98□□□□□ -0.65
RETREG3-210ENST00000590541 ZNF25P17030 456 aaPredicted RBP10.98□□□□□ -0.65
RETREG3-210ENST00000590541 PMCHP20382 165 aa10.98□□□□□ -0.65
RETREG3-210ENST00000590541 PEA15Q15121 130 aa10.98□□□□□ -0.65
RETREG3-210ENST00000590541 ISOC2Q96AB3 205 aa10.98□□□□□ -0.65
RETREG3-210ENST00000590541 MRAP2Q96G30 205 aa10.98□□□□□ -0.65
RETREG3-210ENST00000590541 PPP1R17O96001 155 aa10.97□□□□□ -0.65
RETREG3-210ENST00000590541 RIGQ13278 110 aa10.97□□□□□ -0.65
RETREG3-210ENST00000590541 ST20Q9HBF5 79 aa10.97□□□□□ -0.65
RETREG3-210ENST00000590541 V9GYV3 84 aa10.97□□□□□ -0.65
RETREG3-210ENST00000590541 CNBPP62633 177 aaKnown RBP10.96□□□□□ -0.65
RETREG3-210ENST00000590541 CFAP161Q6P656 301 aa10.96□□□□□ -0.65
RETREG3-210ENST00000590541 AP5S1Q9NUS5 200 aa10.96□□□□□ -0.65
RETREG3-210ENST00000590541 NAT8Q9UHE5 227 aa10.96□□□□□ -0.65
RETREG3-210ENST00000590541 NAT8BQ9UHF3 227 aa10.96□□□□□ -0.65
RETREG3-210ENST00000590541 A0A087WYN8 130 aa10.95□□□□□ -0.66
RETREG3-210ENST00000590541 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.95□□□□□ -0.66
RETREG3-210ENST00000590541 GAS8-AS1O95177 125 aa10.95□□□□□ -0.66
RETREG3-210ENST00000590541 RAB4AP20338 218 aa10.95□□□□□ -0.66
RETREG3-210ENST00000590541 RPL23P62829 140 aaKnown RBP10.95□□□□□ -0.66
RETREG3-210ENST00000590541 RNASEKQ6P5S7 137 aaKnown RBP10.95□□□□□ -0.66
RETREG3-210ENST00000590541 BTF3L4Q96K17 158 aa10.95□□□□□ -0.66
RETREG3-210ENST00000590541 TRBV27A0A0K0K1C4 114 aa10.94□□□□□ -0.66
RETREG3-210ENST00000590541 hDV102S1A0JD36 115 aa10.94□□□□□ -0.66
RETREG3-210ENST00000590541 FGF6P10767 208 aa10.94□□□□□ -0.66
RETREG3-210ENST00000590541 NUP35Q8NFH5 326 aa10.94□□□□□ -0.66
RETREG3-210ENST00000590541 RNF185Q96GF1 192 aa10.94□□□□□ -0.66
RETREG3-210ENST00000590541 TMEM101Q96IK0 257 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms