RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 COX6CP09669 75 aa10.24□□□□□ -0.77
VPS9D1-202ENST00000561976 GNLYP22749 145 aa10.24□□□□□ -0.77
VPS9D1-202ENST00000561976 DOPEY2Q9Y3R5 2298 aa10.24□□□□□ -0.77
VPS9D1-202ENST00000561976 SPTBN4Q9H254 2564 aa10.24□□□□□ -0.77
VPS9D1-202ENST00000561976 TRAV4A0A0B4J268 109 aa10.24□□□□□ -0.77
VPS9D1-202ENST00000561976 H3BMM0 161 aa10.24□□□□□ -0.77
VPS9D1-202ENST00000561976 UBE2WQ96B02 151 aa10.24□□□□□ -0.77
VPS9D1-202ENST00000561976 FAM104AQ969W3 186 aa10.23□□□□□ -0.77
VPS9D1-202ENST00000561976 CRLF1O75462 422 aa10.23□□□□□ -0.77
VPS9D1-202ENST00000561976 PRM2P04554 102 aa10.23□□□□□ -0.77
VPS9D1-202ENST00000561976 RBMY1A1P0DJD3 496 aaKnown RBP10.23□□□□□ -0.77
VPS9D1-202ENST00000561976 RBMY1CP0DJD4 496 aa10.23□□□□□ -0.77
VPS9D1-202ENST00000561976 RBMY1FQ15415 496 aaKnown RBP10.23□□□□□ -0.77
VPS9D1-202ENST00000561976 Q6ZSV7 163 aa10.23□□□□□ -0.77
VPS9D1-202ENST00000561976 MIAQ16674 131 aa10.22□□□□□ -0.77
VPS9D1-202ENST00000561976 VSIG2Q96IQ7 327 aa10.22□□□□□ -0.77
VPS9D1-202ENST00000561976 CREBBPQ92793 2442 aa10.22□□□□□ -0.77
VPS9D1-202ENST00000561976 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.22□□□□□ -0.77
VPS9D1-202ENST00000561976 IGKV2-29A2NJV5 120 aaPredicted RBP10.22□□□□□ -0.77
VPS9D1-202ENST00000561976 DUX3Q96PT4 197 aa10.22□□□□□ -0.77
VPS9D1-202ENST00000561976 SPANXDQ9BXN6 97 aa10.22□□□□□ -0.77
VPS9D1-202ENST00000561976 SPANXCQ9NY87 97 aa10.22□□□□□ -0.77
VPS9D1-202ENST00000561976 Q9UF83 564 aa10.22□□□□□ -0.77
VPS9D1-202ENST00000561976 RPL13AP40429 203 aaKnown RBP10.21□□□□□ -0.77
VPS9D1-202ENST00000561976 TTC32Q5I0X7 151 aa10.21□□□□□ -0.77
VPS9D1-202ENST00000561976 DEFB112Q30KQ8 113 aa10.21□□□□□ -0.78
VPS9D1-202ENST00000561976 SMIM20Q8N5G0 67 aa10.21□□□□□ -0.78
VPS9D1-202ENST00000561976 CLEC2BQ92478 149 aa10.21□□□□□ -0.78
VPS9D1-202ENST00000561976 NCOR2Q9Y618 2525 aa10.21□□□□□ -0.78
VPS9D1-202ENST00000561976 TINCRA0A1B0GVN0 87 aa10.2□□□□□ -0.78
VPS9D1-202ENST00000561976 B5MCH6 92 aa10.2□□□□□ -0.78
VPS9D1-202ENST00000561976 H7C423 109 aa10.2□□□□□ -0.78
VPS9D1-202ENST00000561976 GAGE5Q13069 117 aa10.2□□□□□ -0.78
VPS9D1-202ENST00000561976 GAGE6Q13070 117 aa10.2□□□□□ -0.78
VPS9D1-202ENST00000561976 FAM110AQ9BQ89 295 aa10.2□□□□□ -0.78
VPS9D1-202ENST00000561976 DEFB131AP59861 70 aa10.2□□□□□ -0.78
VPS9D1-202ENST00000561976 C15orf53Q8NAA6 179 aa10.2□□□□□ -0.78
VPS9D1-202ENST00000561976 IGHV3-38A0A0C4DH36 116 aa10.2□□□□□ -0.78
VPS9D1-202ENST00000561976 B4DSR2 109 aa10.2□□□□□ -0.78
VPS9D1-202ENST00000561976 HOXD3P31249 432 aaPredicted RBP10.2□□□□□ -0.78
VPS9D1-202ENST00000561976 NDUFV3P56181 108 aaKnown RBP10.19□□□□□ -0.78
VPS9D1-202ENST00000561976 Q6ZSN1 163 aa10.19□□□□□ -0.78
VPS9D1-202ENST00000561976 DAND5Q8N907 189 aa10.19□□□□□ -0.78
VPS9D1-202ENST00000561976 CHCHD7Q9BUK0 85 aa10.19□□□□□ -0.78
VPS9D1-202ENST00000561976 EDA2RQ9HAV5 297 aa10.19□□□□□ -0.78
VPS9D1-202ENST00000561976 YAE1D1Q9NRH1 226 aa10.19□□□□□ -0.78
VPS9D1-202ENST00000561976 SPANXA1Q9NS26 97 aa10.19□□□□□ -0.78
VPS9D1-202ENST00000561976 UBE2D4Q9Y2X8 147 aa10.19□□□□□ -0.78
VPS9D1-202ENST00000561976 CHD8Q9HCK8 2581 aa10.18□□□□□ -0.78
VPS9D1-202ENST00000561976 NHLRC4P0CG21 123 aaPredicted RBP10.18□□□□□ -0.78
VPS9D1-202ENST00000561976 IFITM1P13164 125 aa10.18□□□□□ -0.78
VPS9D1-202ENST00000561976 TMEM61Q8N0U2 210 aa10.18□□□□□ -0.78
VPS9D1-202ENST00000561976 LINC01600Q96MT4 127 aa10.18□□□□□ -0.78
VPS9D1-202ENST00000561976 LINC00467Q9BRT7 94 aa10.18□□□□□ -0.78
VPS9D1-202ENST00000561976 CRYBG3Q68DQ2 2970 aa10.18□□□□□ -0.78
VPS9D1-202ENST00000561976 TMEM89A2RUT3 159 aa10.17□□□□□ -0.78
VPS9D1-202ENST00000561976 H3BT86 120 aa10.17□□□□□ -0.78
VPS9D1-202ENST00000561976 ZNF415Q09FC8 603 aa10.17□□□□□ -0.78
VPS9D1-202ENST00000561976 DGAT2L7PQ6IED9 249 aa10.16□□□□□ -0.78
VPS9D1-202ENST00000561976 RNF152Q8N8N0 203 aa10.16□□□□□ -0.78
VPS9D1-202ENST00000561976 CDKN2A-AS1Q9UH64 79 aa10.16□□□□□ -0.78
VPS9D1-202ENST00000561976 LST1O00453 97 aa10.15□□□□□ -0.78
VPS9D1-202ENST00000561976 CIRBPQ14011 172 aaKnown RBP10.14□□□□□ -0.79
VPS9D1-202ENST00000561976 LINC01587Q99440 93 aa10.14□□□□□ -0.79
VPS9D1-202ENST00000561976 A0A0U1RRA0 63 aa10.14□□□□□ -0.79
VPS9D1-202ENST00000561976 SLURP1P55000 103 aa10.14□□□□□ -0.79
VPS9D1-202ENST00000561976 DEFB136Q30KP8 78 aa10.14□□□□□ -0.79
VPS9D1-202ENST00000561976 RBMY1BA6NDE4 496 aaKnown RBP10.14□□□□□ -0.79
VPS9D1-202ENST00000561976 RBMY1EA6NEQ0 496 aaKnown RBP10.14□□□□□ -0.79
VPS9D1-202ENST00000561976 GAGE12JA6NER3 117 aa10.14□□□□□ -0.79
VPS9D1-202ENST00000561976 GAGE7O76087 117 aa10.14□□□□□ -0.79
VPS9D1-202ENST00000561976 RBMY1DP0C7P1 496 aaKnown RBP10.14□□□□□ -0.79
VPS9D1-202ENST00000561976 GAGE12FP0CL80 117 aa10.14□□□□□ -0.79
VPS9D1-202ENST00000561976 GAGE12GP0CL81 117 aa10.14□□□□□ -0.79
VPS9D1-202ENST00000561976 GAGE12IP0CL82 117 aa10.14□□□□□ -0.79
VPS9D1-202ENST00000561976 GAGE4Q13068 117 aa10.14□□□□□ -0.79
VPS9D1-202ENST00000561976 Q6Q795 121 aa10.14□□□□□ -0.79
VPS9D1-202ENST00000561976 ZNF625Q96I27 306 aaPredicted RBP10.14□□□□□ -0.79
VPS9D1-202ENST00000561976 TMEM101Q96IK0 257 aa10.14□□□□□ -0.79
VPS9D1-202ENST00000561976 TIMM17BO60830 172 aa10.13□□□□□ -0.79
VPS9D1-202ENST00000561976 UBE2E2Q96LR5 201 aa10.13□□□□□ -0.79
VPS9D1-202ENST00000561976 CELSR2Q9HCU4 2923 aa10.13□□□□□ -0.79
VPS9D1-202ENST00000561976 CCDC179H3BU77 68 aa10.12□□□□□ -0.79
VPS9D1-202ENST00000561976 NDUFA1O15239 70 aa10.12□□□□□ -0.79
VPS9D1-202ENST00000561976 NACAE9PAV3 2078 aa10.12□□□□□ -0.79
VPS9D1-202ENST00000561976 IGHV3-53P01767 116 aa10.12□□□□□ -0.79
VPS9D1-202ENST00000561976 DNAJC30Q96LL9 226 aa10.11□□□□□ -0.79
VPS9D1-202ENST00000561976 Q9H8V8 135 aa10.11□□□□□ -0.79
VPS9D1-202ENST00000561976 COX6A2Q02221 97 aa10.11□□□□□ -0.79
VPS9D1-202ENST00000561976 C18orf65Q6ZTR6 163 aa10.11□□□□□ -0.79
VPS9D1-202ENST00000561976 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.11□□□□□ -0.79
VPS9D1-202ENST00000561976 NRGNQ92686 78 aa10.11□□□□□ -0.79
VPS9D1-202ENST00000561976 TIRAPP58753 221 aa10.1□□□□□ -0.79
VPS9D1-202ENST00000561976 MAPK1IP1LQ8NDC0 245 aa10.1□□□□□ -0.79
VPS9D1-202ENST00000561976 CITED2Q99967 270 aaPredicted RBP10.1□□□□□ -0.79
VPS9D1-202ENST00000561976 PIK3CD-AS1Q5SR53 167 aa10.1□□□□□ -0.79
VPS9D1-202ENST00000561976 LINC00308Q8TCZ7 52 aa10.1□□□□□ -0.79
VPS9D1-202ENST00000561976 VPREB3Q9UKI3 123 aa10.1□□□□□ -0.79
VPS9D1-202ENST00000561976 LINC01356Q8N9X3 169 aa10.09□□□□□ -0.79
VPS9D1-202ENST00000561976 ITPR1Q14643 2758 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms