RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 USP9XQ93008 2570 aaPredicted RBP0.44□□□□□ -2.34
VPS13C-207ENST00000558919 EPG5Q9HCE0 2579 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 KIF13AQ9H1H9 1805 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 TRBV7-3A0A075B6L6 115 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 CTXND1A0A1B0GTU2 59 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 M0R135 149 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 SPINK8P0C7L1 97 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 HSD52Q0P140 79 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 Q5VV11 94 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 KRTAP19-3Q7Z4W3 81 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 TSLPQ969D9 159 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 C14orf144Q96I85 54 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 PROK2Q9HC23 129 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 NPVFQ9HCQ7 196 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 LINC00474Q9P2X8 69 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 NESP48681 1621 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 DOPEY1Q5JWR5 2465 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 NAV2Q8IVL1 2488 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 MYH1P12882 1939 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 ATG2AQ2TAZ0 1938 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 TRANK1O15050 2925 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 SETD2Q9BYW2 2564 aaPredicted RBP0.44□□□□□ -2.34
VPS13C-207ENST00000558919 ZDBF2Q9HCK1 2354 aa0.43□□□□□ -2.34
VPS13C-207ENST00000558919 CEP350Q5VT06 3117 aa0.43□□□□□ -2.34
VPS13C-207ENST00000558919 PXDNQ92626 1479 aa0.43□□□□□ -2.34
VPS13C-207ENST00000558919 DLEC1Q9Y238 1755 aa0.43□□□□□ -2.34
VPS13C-207ENST00000558919 LOC285095A0A1B0GVY8 99 aa0.43□□□□□ -2.34
VPS13C-207ENST00000558919 TMEM218A2RU14 115 aa0.43□□□□□ -2.34
VPS13C-207ENST00000558919 ATP6V1G2-DDX39BF2Z307 99 aa0.43□□□□□ -2.34
VPS13C-207ENST00000558919 PIN1P1O15428 100 aa0.43□□□□□ -2.34
VPS13C-207ENST00000558919 RBP2P50120 134 aa0.43□□□□□ -2.34
VPS13C-207ENST00000558919 GNG11P61952 73 aa0.43□□□□□ -2.34
VPS13C-207ENST00000558919 CFAP126Q5VTH2 177 aa0.43□□□□□ -2.34
VPS13C-207ENST00000558919 SMIM4Q8WVI0 70 aa0.43□□□□□ -2.34
VPS13C-207ENST00000558919 NDUFA4L2Q9NRX3 87 aa0.43□□□□□ -2.34
VPS13C-207ENST00000558919 UQCR10Q9UDW1 63 aa0.43□□□□□ -2.34
VPS13C-207ENST00000558919 PIEZO1Q92508 2521 aa0.43□□□□□ -2.34
VPS13C-207ENST00000558919 TRPM7Q96QT4 1865 aa0.43□□□□□ -2.34
VPS13C-207ENST00000558919 HECTD1Q9ULT8 2610 aa0.43□□□□□ -2.34
VPS13C-207ENST00000558919 CFAP43Q8NDM7 1665 aa0.43□□□□□ -2.34
VPS13C-207ENST00000558919 CHD6Q8TD26 2715 aa0.43□□□□□ -2.34
VPS13C-207ENST00000558919 LRRC37A3O60309 1634 aa0.42□□□□□ -2.34
VPS13C-207ENST00000558919 PZPP20742 1482 aa0.42□□□□□ -2.34
VPS13C-207ENST00000558919 PCLOQ9Y6V0 5065 aa0.42□□□□□ -2.34
VPS13C-207ENST00000558919 CDK5RAP2Q96SN8 1893 aa0.42□□□□□ -2.34
VPS13C-207ENST00000558919 MYO18BQ8IUG5 2567 aa0.42□□□□□ -2.34
VPS13C-207ENST00000558919 C10orf71Q711Q0 1435 aa0.42□□□□□ -2.34
VPS13C-207ENST00000558919 SCAPERQ9BY12 1400 aa0.42□□□□□ -2.34
VPS13C-207ENST00000558919 NAP1L6A6NFF2 107 aa0.42□□□□□ -2.34
VPS13C-207ENST00000558919 H3BQ15 152 aa0.42□□□□□ -2.34
VPS13C-207ENST00000558919 CHKB-CPT1BH3BT56 60 aa0.42□□□□□ -2.34
VPS13C-207ENST00000558919 NMBP08949 121 aa0.42□□□□□ -2.34
VPS13C-207ENST00000558919 SNCAP37840 140 aa0.42□□□□□ -2.34
VPS13C-207ENST00000558919 UBE2DNLQ8IWF7 75 aa0.42□□□□□ -2.34
VPS13C-207ENST00000558919 PLAC8Q9NZF1 115 aa0.42□□□□□ -2.34
VPS13C-207ENST00000558919 ANKRD11Q6UB99 2663 aaPredicted RBP0.42□□□□□ -2.34
VPS13C-207ENST00000558919 ZNF142P52746 1687 aaPredicted RBP0.42□□□□□ -2.34
VPS13C-207ENST00000558919 PPRC1Q5VV67 1664 aaKnown RBP0.42□□□□□ -2.34
VPS13C-207ENST00000558919 ZMYM4Q5VZL5 1548 aa0.42□□□□□ -2.34
VPS13C-207ENST00000558919 CC2D2AQ9P2K1 1620 aa0.42□□□□□ -2.34
VPS13C-207ENST00000558919 APCP25054 2843 aa0.42□□□□□ -2.34
VPS13C-207ENST00000558919 MRC1P22897 1456 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 ITPR3Q14573 2671 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 PHLPP1O60346 1717 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 UBR4Q5T4S7 5183 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 PEG3Q9GZU2 1588 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 KDM5AP29375 1690 aaKnown RBP0.41□□□□□ -2.34
VPS13C-207ENST00000558919 TRAV30A0A087WSZ9 112 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 IGLC7A0M8Q6 106 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 TMEM262E9PQX1 116 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 F8VRH5 84 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 G3V318 75 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 HMGN4O00479 90 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 UQCR11O14957 56 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 APOC3P02656 99 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 COX6A2Q02221 97 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 COX17Q14061 63 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 TMEM170BQ5T4T1 132 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 BAGE2Q86Y30 109 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 GCN1Q92616 2671 aaKnown RBP0.41□□□□□ -2.34
VPS13C-207ENST00000558919 MAPKBP1O60336 1514 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 RBBP6Q7Z6E9 1792 aaKnown RBP0.41□□□□□ -2.34
VPS13C-207ENST00000558919 C2CD3Q4AC94 2353 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 PTPN13Q12923 2485 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 NALCNQ8IZF0 1738 aa0.41□□□□□ -2.34
VPS13C-207ENST00000558919 NCOR1O75376 2440 aa0.4□□□□□ -2.34
VPS13C-207ENST00000558919 THOC2Q8NI27 1593 aaKnown RBP0.4□□□□□ -2.34
VPS13C-207ENST00000558919 SRCAPQ6ZRS2 3230 aa0.4□□□□□ -2.34
VPS13C-207ENST00000558919 BDP1A6H8Y1 2624 aa0.4□□□□□ -2.34
VPS13C-207ENST00000558919 COL6A5A8TX70 2615 aa0.4□□□□□ -2.34
VPS13C-207ENST00000558919 FLNBO75369 2602 aaKnown RBP0.4□□□□□ -2.34
VPS13C-207ENST00000558919 TNRC18O15417 2968 aaPredicted RBP0.4□□□□□ -2.34
VPS13C-207ENST00000558919 CCDC168Q8NDH2 2452 aa0.4□□□□□ -2.35
VPS13C-207ENST00000558919 STAB1Q9NY15 2570 aa0.4□□□□□ -2.35
VPS13C-207ENST00000558919 KIAA1109Q2LD37 5005 aa0.4□□□□□ -2.35
VPS13C-207ENST00000558919 KRTDAPP60985 99 aa0.4□□□□□ -2.35
VPS13C-207ENST00000558919 FAM213BQ8TBF2 198 aa0.4□□□□□ -2.35
VPS13C-207ENST00000558919 FAM167A-AS1Q96KT0 104 aa0.4□□□□□ -2.35
VPS13C-207ENST00000558919 AMELXQ99217 191 aa0.4□□□□□ -2.35
VPS13C-207ENST00000558919 MANBALQ9NQG1 85 aa0.4□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms