RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 TIMM21Q9BVV7 248 aa11.09□□□□□ -0.63
CUX1-215ENST00000556210 U3KQE9 123 aa11.09□□□□□ -0.63
CUX1-215ENST00000556210 CITED1Q99966 193 aa11.09□□□□□ -0.63
CUX1-215ENST00000556210 HELZ2Q9BYK8 2649 aaKnown RBP11.08□□□□□ -0.64
CUX1-215ENST00000556210 TSPAN13O95857 204 aa11.08□□□□□ -0.64
CUX1-215ENST00000556210 INSP01308 110 aa11.08□□□□□ -0.64
CUX1-215ENST00000556210 MT-ATP8P03928 68 aa11.08□□□□□ -0.64
CUX1-215ENST00000556210 DEFB113Q30KQ7 82 aa11.08□□□□□ -0.64
CUX1-215ENST00000556210 CHCHD5Q9BSY4 110 aa11.08□□□□□ -0.64
CUX1-215ENST00000556210 ZMAT4Q9H898 229 aa11.08□□□□□ -0.64
CUX1-215ENST00000556210 TRAV8-3A0A0A6YYJ7 113 aa11.08□□□□□ -0.64
CUX1-215ENST00000556210 TEN1Q86WV5 123 aa11.08□□□□□ -0.64
CUX1-215ENST00000556210 CNFNQ9BYD5 112 aa11.08□□□□□ -0.64
CUX1-215ENST00000556210 TRAV8-4A0A0B4J246 113 aa11.07□□□□□ -0.64
CUX1-215ENST00000556210 B5MCH6 92 aa11.07□□□□□ -0.64
CUX1-215ENST00000556210 CRYBA4P53673 196 aa11.07□□□□□ -0.64
CUX1-215ENST00000556210 USP24Q9UPU5 2620 aa11.07□□□□□ -0.64
CUX1-215ENST00000556210 NEXN-AS1Q8NBZ9 246 aa11.07□□□□□ -0.64
CUX1-215ENST00000556210 NTN5Q8WTR8 489 aaPredicted RBP11.07□□□□□ -0.64
CUX1-215ENST00000556210 A4D1N5 150 aa11.06□□□□□ -0.64
CUX1-215ENST00000556210 TRBV7-3A0A075B6L6 115 aa11.06□□□□□ -0.64
CUX1-215ENST00000556210 NOP10Q9NPE3 64 aaKnown RBP11.06□□□□□ -0.64
CUX1-215ENST00000556210 C2orf82Q6UX34 121 aa11.06□□□□□ -0.64
CUX1-215ENST00000556210 OR13C6PQ8NH95 151 aa11.06□□□□□ -0.64
CUX1-215ENST00000556210 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.06□□□□□ -0.64
CUX1-215ENST00000556210 PSMB8P28062 276 aa11.06□□□□□ -0.64
CUX1-215ENST00000556210 CIRBPQ14011 172 aaKnown RBP11.06□□□□□ -0.64
CUX1-215ENST00000556210 C10orf126Q8N4M7 172 aa11.06□□□□□ -0.64
CUX1-215ENST00000556210 TMEM141Q96I45 108 aa11.06□□□□□ -0.64
CUX1-215ENST00000556210 A8MZ25 164 aa11.05□□□□□ -0.64
CUX1-215ENST00000556210 TCL1BO95988 128 aa11.05□□□□□ -0.64
CUX1-215ENST00000556210 RNASE1P07998 156 aaKnown RBP11.05□□□□□ -0.64
CUX1-215ENST00000556210 ANKRD29Q8N6D5 301 aa11.05□□□□□ -0.64
CUX1-215ENST00000556210 ATXN8Q156A1 80 aa11.05□□□□□ -0.64
CUX1-215ENST00000556210 DCANP1Q8TF63 244 aa11.05□□□□□ -0.64
CUX1-215ENST00000556210 BBC3Q96PG8 261 aaPredicted RBP11.05□□□□□ -0.64
CUX1-215ENST00000556210 NDUFA11Q86Y39 141 aa11.05□□□□□ -0.64
CUX1-215ENST00000556210 K7EQG2 157 aa11.04□□□□□ -0.64
CUX1-215ENST00000556210 ESM1Q9NQ30 184 aa11.04□□□□□ -0.64
CUX1-215ENST00000556210 K7EMT4 169 aa11.04□□□□□ -0.64
CUX1-215ENST00000556210 RPL36AP83881 106 aaKnown RBP11.04□□□□□ -0.64
CUX1-215ENST00000556210 RPL36ALQ969Q0 106 aaKnown RBP11.04□□□□□ -0.64
CUX1-215ENST00000556210 CCL24O00175 119 aa11.04□□□□□ -0.64
CUX1-215ENST00000556210 CFC1BP0CG36 223 aa11.04□□□□□ -0.64
CUX1-215ENST00000556210 CFC1P0CG37 223 aa11.04□□□□□ -0.64
CUX1-215ENST00000556210 SPATA25Q9BR10 227 aa11.04□□□□□ -0.64
CUX1-215ENST00000556210 Q6ZUT4 128 aa11.03□□□□□ -0.64
CUX1-215ENST00000556210 NDUFA12Q9UI09 145 aa11.03□□□□□ -0.64
CUX1-215ENST00000556210 IGHV4-31P0DP07 118 aa11.03□□□□□ -0.64
CUX1-215ENST00000556210 SMIM20Q8N5G0 67 aa11.03□□□□□ -0.64
CUX1-215ENST00000556210 IGLV2-18A0A075B6J9 118 aa11.03□□□□□ -0.64
CUX1-215ENST00000556210 J3QLI3 93 aa11.03□□□□□ -0.64
CUX1-215ENST00000556210 M0R2P5 195 aa11.03□□□□□ -0.64
CUX1-215ENST00000556210 CITED2Q99967 270 aaPredicted RBP11.03□□□□□ -0.64
CUX1-215ENST00000556210 MUC4Q99102 2169 aa11.02□□□□□ -0.64
CUX1-215ENST00000556210 CLPSL2Q6UWE3 100 aa11.02□□□□□ -0.64
CUX1-215ENST00000556210 WFDC10AQ9H1F0 79 aa11.02□□□□□ -0.64
CUX1-215ENST00000556210 IGLV1-40P01703 118 aa11.02□□□□□ -0.65
CUX1-215ENST00000556210 COX8CQ7Z4L0 72 aa11.02□□□□□ -0.65
CUX1-215ENST00000556210 TMEM101Q96IK0 257 aa11.02□□□□□ -0.65
CUX1-215ENST00000556210 ATRQ13535 2644 aa11.02□□□□□ -0.65
CUX1-215ENST00000556210 MORN3Q6PF18 240 aaPredicted RBP11.01□□□□□ -0.65
CUX1-215ENST00000556210 CFAP126Q5VTH2 177 aa11.01□□□□□ -0.65
CUX1-215ENST00000556210 PRIMA1Q86XR5 153 aa11.01□□□□□ -0.65
CUX1-215ENST00000556210 MUSTN1Q8IVN3 82 aa11.01□□□□□ -0.65
CUX1-215ENST00000556210 NBEAL2Q6ZNJ1 2754 aa11.01□□□□□ -0.65
CUX1-215ENST00000556210 GAGE6Q13070 117 aa11.01□□□□□ -0.65
CUX1-215ENST00000556210 RNF183Q96D59 192 aa11.01□□□□□ -0.65
CUX1-215ENST00000556210 A0A0J9YY99 117 aa11□□□□□ -0.65
CUX1-215ENST00000556210 NF1P21359 2839 aa11□□□□□ -0.65
CUX1-215ENST00000556210 DEFB4AO15263 64 aa10.99□□□□□ -0.65
CUX1-215ENST00000556210 C3orf56Q8N813 242 aa10.99□□□□□ -0.65
CUX1-215ENST00000556210 ATP6V0E2Q8NHE4 81 aa10.99□□□□□ -0.65
CUX1-215ENST00000556210 XGP55808 180 aa10.99□□□□□ -0.65
CUX1-215ENST00000556210 ZNF580Q9UK33 172 aa10.99□□□□□ -0.65
CUX1-215ENST00000556210 H3BMM0 161 aa10.98□□□□□ -0.65
CUX1-215ENST00000556210 M0QY20 66 aa10.98□□□□□ -0.65
CUX1-215ENST00000556210 UBE2WQ96B02 151 aa10.98□□□□□ -0.65
CUX1-215ENST00000556210 KLLNB2CW77 178 aa10.98□□□□□ -0.65
CUX1-215ENST00000556210 LINC00158P58513 81 aa10.98□□□□□ -0.65
CUX1-215ENST00000556210 ZNF843Q8N446 348 aa10.98□□□□□ -0.65
CUX1-215ENST00000556210 C20orf203Q8NBC4 194 aa10.98□□□□□ -0.65
CUX1-215ENST00000556210 ZNF702PQ9H963 129 aa10.98□□□□□ -0.65
CUX1-215ENST00000556210 MAP6D1Q9H9H5 199 aa10.98□□□□□ -0.65
CUX1-215ENST00000556210 Q6YL49 198 aa10.97□□□□□ -0.65
CUX1-215ENST00000556210 PFN2P35080 140 aa10.97□□□□□ -0.65
CUX1-215ENST00000556210 Q9UF83 564 aa10.97□□□□□ -0.65
CUX1-215ENST00000556210 CRYGDP07320 174 aa10.97□□□□□ -0.65
CUX1-215ENST00000556210 C15orf53Q8NAA6 179 aa10.97□□□□□ -0.65
CUX1-215ENST00000556210 FBN2P35556 2912 aa10.96□□□□□ -0.65
CUX1-215ENST00000556210 SOCS3O14543 225 aa10.96□□□□□ -0.65
CUX1-215ENST00000556210 Q6ZTI0 123 aa10.96□□□□□ -0.65
CUX1-215ENST00000556210 CELSR2Q9HCU4 2923 aa10.96□□□□□ -0.66
CUX1-215ENST00000556210 DNAJC9-AS1A6NH13 148 aa10.95□□□□□ -0.66
CUX1-215ENST00000556210 NFE4Q86UQ8 179 aa10.95□□□□□ -0.66
CUX1-215ENST00000556210 SLC25A29Q8N8R3 303 aa10.95□□□□□ -0.66
CUX1-215ENST00000556210 LINC01620Q4KN68 170 aa10.95□□□□□ -0.66
CUX1-215ENST00000556210 TIMM17AQ99595 171 aa10.95□□□□□ -0.66
CUX1-215ENST00000556210 TEP1Q99973 2627 aaKnown RBP10.95□□□□□ -0.66
CUX1-215ENST00000556210 IGHV4-4A0A075B6R2 117 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms