RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PAIP2BQ9ULR5 123 aaKnown RBP-0.04□□□□□ -2.42
SCFD1-216ENST00000555550 UNC13BO14795 1591 aa-0.04□□□□□ -2.42
SCFD1-216ENST00000555550 PARP14Q460N5 1801 aa-0.04□□□□□ -2.42
SCFD1-216ENST00000555550 PRDM2Q13029 1718 aa-0.04□□□□□ -2.42
SCFD1-216ENST00000555550 DAPK1P53355 1430 aa-0.04□□□□□ -2.42
SCFD1-216ENST00000555550 ROBO1Q9Y6N7 1651 aa-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 TNXBP22105 4242 aa-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 PRRC2CQ9Y520 2896 aaKnown RBP-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 PATJQ8NI35 1801 aa-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 TRGV1A0A0A0MS02 117 aa-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 GNG7O60262 68 aa-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 COX4I1P13073 169 aa-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 GUCA1AP43080 201 aaPredicted RBP-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 EDDM3BP56851 147 aa-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 SELENOWP63302 87 aa-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 CCL8P80075 99 aa-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 Q6AWC8 147 aa-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 ZNF818PQ6ZRF7 136 aa-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 TCEAL4Q96EI5 215 aa-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 DSCR8Q96T75 97 aa-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 VPS25Q9BRG1 176 aa-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 SPRR2GQ9BYE4 73 aa-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 LINC00472Q9H8W2 130 aa-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 TMEM242Q9NWH2 141 aa-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 IFT172Q9UG01 1749 aa-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 A2ML1A8K2U0 1454 aa-0.05□□□□□ -2.42
SCFD1-216ENST00000555550 LAMA2P24043 3122 aaKnown RBP-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 WDR87Q6ZQQ6 2873 aa-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 TRBV7-1A0A0A6YYK4 115 aa-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 TCRBV3S1A0A5B6 114 aa-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 MCRIP1C9JLW8 97 aa-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 K7ERU9 68 aa-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 SIX6O95475 246 aa-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 CBLN1P23435 193 aa-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 CCL18P55774 89 aa-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 FXYD6P3P58550 94 aa-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 RRAS2P62070 204 aaPredicted RBP-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 INSL4Q14641 139 aa-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 Q6ZRX8 168 aa-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 CYP2G1PQ6ZSU1 146 aa-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 C4orf33Q8N1A6 199 aa-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 SMIM11BQ8TCY0 68 aa-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 AMELXQ99217 191 aa-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 BPESC1Q9GZL8 116 aa-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 NCOA3Q9Y6Q9 1424 aa-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 PKD1L1Q8TDX9 2849 aa-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 ARHGEF5Q12774 1597 aa-0.06□□□□□ -2.42
SCFD1-216ENST00000555550 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.07□□□□□ -2.42
SCFD1-216ENST00000555550 DOCK11Q5JSL3 2073 aa-0.07□□□□□ -2.42
SCFD1-216ENST00000555550 FAT2Q9NYQ8 4349 aa-0.07□□□□□ -2.42
SCFD1-216ENST00000555550 RBAKDNA6NC62 111 aa-0.07□□□□□ -2.42
SCFD1-216ENST00000555550 HCG22E2RYF7 251 aa-0.07□□□□□ -2.42
SCFD1-216ENST00000555550 NDUFB6O95139 128 aa-0.07□□□□□ -2.42
SCFD1-216ENST00000555550 HIST1H1DP16402 221 aaKnown RBP-0.07□□□□□ -2.42
SCFD1-216ENST00000555550 PFDN5Q99471 154 aa-0.07□□□□□ -2.42
SCFD1-216ENST00000555550 SEC11CQ9BY50 192 aa-0.07□□□□□ -2.42
SCFD1-216ENST00000555550 RERGLQ9H628 205 aa-0.07□□□□□ -2.42
SCFD1-216ENST00000555550 NBEAL1Q6ZS30 2694 aa-0.07□□□□□ -2.42
SCFD1-216ENST00000555550 FLNBO75369 2602 aaKnown RBP-0.07□□□□□ -2.42
SCFD1-216ENST00000555550 NALCNQ8IZF0 1738 aa-0.07□□□□□ -2.42
SCFD1-216ENST00000555550 ZNF236Q9UL36 1845 aa-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 MRC1P22897 1456 aa-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 LPAP08519 4548 aa-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 ITPR2Q14571 2701 aa-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 TRBV10-3A0A0K0K1G6 114 aa-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 FAM92AA1XBS5 289 aa-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 TMEM14DPA8MWL7 114 aa-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 C10orf142B7Z368 130 aa-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 APODP05090 189 aa-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 IL5P05113 134 aa-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 NMBP08949 121 aa-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 LZICQ8WZA0 190 aa-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 COA4Q9NYJ1 87 aa-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 CCDC167Q9P0B6 97 aa-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 LINC00474Q9P2X8 69 aa-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 LINC00312Q9Y6C7 94 aa-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 SERP1Q9Y6X1 66 aa-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 MYO9AB2RTY4 2548 aa-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 ARAP2Q8WZ64 1704 aa-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 TEX15Q9BXT5 2789 aa-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 RIMS1Q86UR5 1692 aaKnown RBP-0.08□□□□□ -2.42
SCFD1-216ENST00000555550 F8P00451 2351 aa-0.09□□□□□ -2.42
SCFD1-216ENST00000555550 MYO7AQ13402 2215 aa-0.09□□□□□ -2.42
SCFD1-216ENST00000555550 ASXL3Q9C0F0 2248 aa-0.09□□□□□ -2.42
SCFD1-216ENST00000555550 NWD2Q9ULI1 1742 aa-0.09□□□□□ -2.42
SCFD1-216ENST00000555550 PRKDCP78527 4128 aaKnown RBP-0.09□□□□□ -2.42
SCFD1-216ENST00000555550 A0A1B0GV90 55 aa-0.09□□□□□ -2.42
SCFD1-216ENST00000555550 J3QR89 54 aa-0.09□□□□□ -2.42
SCFD1-216ENST00000555550 MEIG1Q5JSS6 88 aa-0.09□□□□□ -2.42
SCFD1-216ENST00000555550 SPINK6Q6UWN8 80 aa-0.09□□□□□ -2.42
SCFD1-216ENST00000555550 ZNF436-AS1Q8NC38 126 aaPredicted RBP-0.09□□□□□ -2.42
SCFD1-216ENST00000555550 ARL11Q969Q4 196 aa-0.09□□□□□ -2.42
SCFD1-216ENST00000555550 SPTSSAQ969W0 71 aa-0.09□□□□□ -2.42
SCFD1-216ENST00000555550 RPRMQ9NS64 109 aa-0.09□□□□□ -2.42
SCFD1-216ENST00000555550 V9GYV3 84 aa-0.09□□□□□ -2.42
SCFD1-216ENST00000555550 PLXNB2O15031 1838 aa-0.09□□□□□ -2.42
SCFD1-216ENST00000555550 SPEF2Q9C093 1822 aa-0.09□□□□□ -2.42
SCFD1-216ENST00000555550 CUL7Q14999 1698 aa-0.09□□□□□ -2.42
SCFD1-216ENST00000555550 IGF2RP11717 2491 aa-0.09□□□□□ -2.42
SCFD1-216ENST00000555550 CSMD1Q96PZ7 3565 aa-0.09□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms