RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 IAPPP10997 89 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 CRYGAP11844 174 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 CXCL3P19876 107 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 TAS2R20P59543 309 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 RPS25P62851 125 aaKnown RBP0.67□□□□□ -2.3
PRPF39-208ENST00000554785 QRFPP83859 136 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 AKR1C1Q04828 323 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 RAB31Q13636 194 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 C1orf137Q5JT78 98 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 C10orf91Q5T1B1 145 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 SAMD13Q5VXD3 122 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 RPL22L1Q6P5R6 122 aaKnown RBP0.67□□□□□ -2.3
PRPF39-208ENST00000554785 FAM19A3Q7Z5A8 133 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 NIT1Q86X76 327 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 OR4X1Q8NH49 305 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 ZNF431Q8TF32 576 aaPredicted RBP0.67□□□□□ -2.3
PRPF39-208ENST00000554785 PYDC1Q8WXC3 89 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 MRAP2Q96G30 205 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 MND1Q9BWT6 205 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 MRPL32Q9BYC8 188 aaKnown RBP0.67□□□□□ -2.3
PRPF39-208ENST00000554785 ARL6Q9H0F7 186 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 TMEM222Q9H0R3 208 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 KCNIP2Q9NS61 270 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 PRNDQ9UKY0 176 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 SSR3Q9UNL2 185 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 PHLDA3Q9Y5J5 127 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 TMEM56-RWDD3S4R434 201 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 IGKV2-40A0A087WW87 121 aaPredicted RBP0.67□□□□□ -2.3
PRPF39-208ENST00000554785 A0A1W2PNM2 257 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 C7orf71A4D174 169 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 FABP12A6NFH5 140 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 SNRPGP15A8MWD9 76 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 F6UZH7 168 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 H3BNG1 76 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 CORTO00230 105 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 GSTZ1O43708 216 aaPredicted RBP0.67□□□□□ -2.3
PRPF39-208ENST00000554785 ZNF73O43830 326 aaPredicted RBP0.67□□□□□ -2.3
PRPF39-208ENST00000554785 PGLYRP1O75594 196 aaPredicted RBP0.67□□□□□ -2.3
PRPF39-208ENST00000554785 IGKV2D-40P01614 121 aaPredicted RBP0.67□□□□□ -2.3
PRPF39-208ENST00000554785 GPX1P07203 203 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 OR10J4P0C629 311 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 UBBP0CG47 229 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 ZNF22P17026 224 aaPredicted RBP0.67□□□□□ -2.3
PRPF39-208ENST00000554785 INPP1P49441 399 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 TCL1AP56279 114 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 MP68P56378 58 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 DEFA1P59665 94 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 RAB2AP61019 212 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 RRAS2P62070 204 aaPredicted RBP0.67□□□□□ -2.3
PRPF39-208ENST00000554785 POLR2GP62487 172 aaKnown RBP eCLIP0.67□□□□□ -2.3
PRPF39-208ENST00000554785 EIF5AP63241 154 aaKnown RBP0.67□□□□□ -2.3
PRPF39-208ENST00000554785 SUPT4H1P63272 117 aaKnown RBP0.67□□□□□ -2.3
PRPF39-208ENST00000554785 MT1HP80294 61 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 CIRBPQ14011 172 aaKnown RBP0.67□□□□□ -2.3
PRPF39-208ENST00000554785 KRTAP6-3Q3LI67 103 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 SPACA4Q8TDM5 124 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 RAB2BQ8WUD1 216 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 HIST1H2BAQ96A08 127 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 TP53RKQ96S44 253 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 TSC22D3Q99576 134 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 SLC50A1Q9BRV3 221 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 CCDC90BQ9GZT6 254 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 FXYD6Q9H0Q3 95 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 TREM1Q9NP99 234 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 COMMD9Q9P000 198 aa0.67□□□□□ -2.3
PRPF39-208ENST00000554785 NEBP20929 6669 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 TRAV30A0A087WSZ9 112 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 G3V3Q6 166 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 GABARAPH6UMI1 98 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 GNRH2O43555 120 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 SPINK4O60575 86 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 LTAP01374 205 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 IGKV1-5P01602 117 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 ORM1P02763 201 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 MT-ND6P03923 174 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 IL5P05113 134 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 RCVRNP35243 200 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 HSPE1P61604 102 aaKnown RBP0.66□□□□□ -2.3
PRPF39-208ENST00000554785 B2MP61769 119 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 SLC38A11Q08AI6 406 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 SCGB2B2Q4G0G5 96 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 CCDC58Q4VC31 144 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 SPINK6Q6UWN8 80 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 DPPA3Q6W0C5 159 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 COX6B2Q6YFQ2 88 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 SDIM1Q6ZPB5 146 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 PHF5AQ7RTV0 110 aaKnown RBP0.66□□□□□ -2.3
PRPF39-208ENST00000554785 CROCCP2Q86T23 111 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 LINC00269Q8N2A0 174 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 EXOC3-AS1Q8N2X6 119 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 C9orf163Q8N9P6 203 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 OR10D4PQ8NGN7 298 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 C20orf166-AS1Q96NR2 134 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 TMEM147Q9BVK8 224 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 GTSF1LQ9H1H1 148 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 FKBP11Q9NYL4 201 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 PSORS1C2Q9UIG4 136 aa0.66□□□□□ -2.3
PRPF39-208ENST00000554785 DSTQ03001 7570 aaKnown RBP0.66□□□□□ -2.3
PRPF39-208ENST00000554785 IGHV3-64A0A075B6Q5 118 aa0.65□□□□□ -2.3
PRPF39-208ENST00000554785 TRAV8-1A0A0A6YYK1 113 aa0.65□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms