RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 TRBV6-8A0A0A6YYG3 113 aa8.35□□□□□ -1.07
PTCH1-218ENST00000548945 RAB4BP61018 213 aa8.35□□□□□ -1.07
PTCH1-218ENST00000548945 RPP21Q9H633 154 aaKnown RBP8.35□□□□□ -1.07
PTCH1-218ENST00000548945 CRPP02741 224 aa8.34□□□□□ -1.07
PTCH1-218ENST00000548945 ENHOQ6UWT2 76 aa8.34□□□□□ -1.07
PTCH1-218ENST00000548945 BTF3L4Q96K17 158 aa8.34□□□□□ -1.07
PTCH1-218ENST00000548945 UBR4Q5T4S7 5183 aa8.33□□□□□ -1.08
PTCH1-218ENST00000548945 TRAV9-1A0A075B6T8 112 aa8.33□□□□□ -1.08
PTCH1-218ENST00000548945 A8MWL6 223 aa8.33□□□□□ -1.08
PTCH1-218ENST00000548945 TMEM262E9PQX1 116 aa8.33□□□□□ -1.08
PTCH1-218ENST00000548945 CXCL1P09341 107 aa8.33□□□□□ -1.08
PTCH1-218ENST00000548945 MIAQ16674 131 aa8.33□□□□□ -1.08
PTCH1-218ENST00000548945 DGAT2L7PQ6IED9 249 aa8.33□□□□□ -1.08
PTCH1-218ENST00000548945 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.33□□□□□ -1.08
PTCH1-218ENST00000548945 OR2D3Q8NGH3 330 aa8.33□□□□□ -1.08
PTCH1-218ENST00000548945 TMSB15BA0A087X1C1 80 aa8.32□□□□□ -1.08
PTCH1-218ENST00000548945 XKRY2A2RUG3 117 aa8.32□□□□□ -1.08
PTCH1-218ENST00000548945 FAM231BA6NCW3 169 aa8.32□□□□□ -1.08
PTCH1-218ENST00000548945 RPS20P60866 119 aaKnown RBP8.32□□□□□ -1.08
PTCH1-218ENST00000548945 MPV17L2Q567V2 206 aa8.32□□□□□ -1.08
PTCH1-218ENST00000548945 TMEM97Q5BJF2 176 aa8.32□□□□□ -1.08
PTCH1-218ENST00000548945 NEXN-AS1Q8NBZ9 246 aa8.32□□□□□ -1.08
PTCH1-218ENST00000548945 TSKUQ8WUA8 353 aa8.32□□□□□ -1.08
PTCH1-218ENST00000548945 YPEL4Q96NS1 127 aa8.32□□□□□ -1.08
PTCH1-218ENST00000548945 GFRA4Q9GZZ7 299 aa8.32□□□□□ -1.08
PTCH1-218ENST00000548945 TRBV24-1A0A075B6N3 115 aa8.31□□□□□ -1.08
PTCH1-218ENST00000548945 SMIM27A0A1W2PRY6 76 aa8.31□□□□□ -1.08
PTCH1-218ENST00000548945 USP17L23D6RBM5 183 aa8.31□□□□□ -1.08
PTCH1-218ENST00000548945 ANGP03950 147 aaKnown RBP8.31□□□□□ -1.08
PTCH1-218ENST00000548945 RPL37AP61513 92 aaKnown RBP8.31□□□□□ -1.08
PTCH1-218ENST00000548945 RPL19P84098 196 aaKnown RBP8.31□□□□□ -1.08
PTCH1-218ENST00000548945 NAT8BQ9UHF3 227 aa8.31□□□□□ -1.08
PTCH1-218ENST00000548945 COLCA2A8K830 154 aa8.3□□□□□ -1.08
PTCH1-218ENST00000548945 SNAI2O43623 268 aa8.3□□□□□ -1.08
PTCH1-218ENST00000548945 ZNF56Q15929 161 aa8.3□□□□□ -1.08
PTCH1-218ENST00000548945 C9orf163Q8N9P6 203 aa8.3□□□□□ -1.08
PTCH1-218ENST00000548945 CHCHD5Q9BSY4 110 aa8.3□□□□□ -1.08
PTCH1-218ENST00000548945 SSBP4Q9BWG4 385 aaPredicted RBP8.3□□□□□ -1.08
PTCH1-218ENST00000548945 PRR34Q9NV39 138 aa8.3□□□□□ -1.08
PTCH1-218ENST00000548945 PLA2G2DQ9UNK4 145 aa8.3□□□□□ -1.08
PTCH1-218ENST00000548945 HLA-DQA1P01909 254 aa8.29□□□□□ -1.08
PTCH1-218ENST00000548945 PRSS1P07477 247 aa8.29□□□□□ -1.08
PTCH1-218ENST00000548945 OR5AL1P0C617 328 aa8.29□□□□□ -1.08
PTCH1-218ENST00000548945 OR10AG1Q8NH19 301 aa8.29□□□□□ -1.08
PTCH1-218ENST00000548945 TGIF2-C20orf24A0A0A6YYL0 155 aa8.28□□□□□ -1.08
PTCH1-218ENST00000548945 HIGD1CA8MV81 97 aa8.28□□□□□ -1.08
PTCH1-218ENST00000548945 RAB5AP20339 215 aa8.28□□□□□ -1.08
PTCH1-218ENST00000548945 FOXA3P55318 350 aaPredicted RBP8.28□□□□□ -1.08
PTCH1-218ENST00000548945 GZMBP10144 247 aa8.27□□□□□ -1.09
PTCH1-218ENST00000548945 RBX1P62877 108 aa8.27□□□□□ -1.09
PTCH1-218ENST00000548945 SPANXN1Q5VSR9 72 aa8.27□□□□□ -1.09
PTCH1-218ENST00000548945 KRTAP26-1Q6PEX3 210 aa8.27□□□□□ -1.09
PTCH1-218ENST00000548945 NTM-AS1Q6ZSK4 140 aa8.27□□□□□ -1.09
PTCH1-218ENST00000548945 ATP5L2Q7Z4Y8 100 aa8.27□□□□□ -1.09
PTCH1-218ENST00000548945 NUP35Q8NFH5 326 aa8.27□□□□□ -1.09
PTCH1-218ENST00000548945 GTSF1Q8WW33 167 aa8.27□□□□□ -1.09
PTCH1-218ENST00000548945 TRBV25-1A0A075B6N4 114 aa8.26□□□□□ -1.09
PTCH1-218ENST00000548945 F5H697 171 aa8.26□□□□□ -1.09
PTCH1-218ENST00000548945 IQCJQ1A5X6 159 aa8.26□□□□□ -1.09
PTCH1-218ENST00000548945 COX19Q49B96 90 aa8.26□□□□□ -1.09
PTCH1-218ENST00000548945 RASL11AQ6T310 242 aa8.26□□□□□ -1.09
PTCH1-218ENST00000548945 SDIM1Q6ZPB5 146 aa8.26□□□□□ -1.09
PTCH1-218ENST00000548945 FER1L6-AS1Q8NA97 138 aa8.26□□□□□ -1.09
PTCH1-218ENST00000548945 BORCS7Q96B45 105 aa8.26□□□□□ -1.09
PTCH1-218ENST00000548945 KIF25-AS1Q9Y6Z4 181 aa8.26□□□□□ -1.09
PTCH1-218ENST00000548945 IGLC6P0CF74 106 aa8.25□□□□□ -1.09
PTCH1-218ENST00000548945 SMIM17P0DL12 118 aa8.25□□□□□ -1.09
PTCH1-218ENST00000548945 CTRLP40313 264 aa8.25□□□□□ -1.09
PTCH1-218ENST00000548945 RPS10P46783 165 aaKnown RBP8.25□□□□□ -1.09
PTCH1-218ENST00000548945 HNRNPA3P51991 378 aaKnown RBP8.25□□□□□ -1.09
PTCH1-218ENST00000548945 CNBPP62633 177 aaKnown RBP8.25□□□□□ -1.09
PTCH1-218ENST00000548945 CIRBPQ14011 172 aaKnown RBP8.25□□□□□ -1.09
PTCH1-218ENST00000548945 LINC00269Q8N2A0 174 aa8.25□□□□□ -1.09
PTCH1-218ENST00000548945 PGLYRP4Q96LB8 373 aa8.25□□□□□ -1.09
PTCH1-218ENST00000548945 AP1S3Q96PC3 154 aa8.25□□□□□ -1.09
PTCH1-218ENST00000548945 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.25□□□□□ -1.09
PTCH1-218ENST00000548945 TRAV8-4A0A0B4J246 113 aa8.24□□□□□ -1.09
PTCH1-218ENST00000548945 A0A1B0GUT8 65 aa8.24□□□□□ -1.09
PTCH1-218ENST00000548945 F2Z2F3 143 aa8.24□□□□□ -1.09
PTCH1-218ENST00000548945 MRPL54Q6P161 138 aaKnown RBP8.24□□□□□ -1.09
PTCH1-218ENST00000548945 WDR73Q6P4I2 378 aa8.24□□□□□ -1.09
PTCH1-218ENST00000548945 TPPP3Q9BW30 176 aa8.24□□□□□ -1.09
PTCH1-218ENST00000548945 IGHV1-24A0A0C4DH33 117 aa8.23□□□□□ -1.09
PTCH1-218ENST00000548945 A0A1B0GW15 77 aa8.23□□□□□ -1.09
PTCH1-218ENST00000548945 H7C1H1 209 aa8.23□□□□□ -1.09
PTCH1-218ENST00000548945 MT-ND6P03923 174 aa8.23□□□□□ -1.09
PTCH1-218ENST00000548945 S100A8P05109 93 aa8.23□□□□□ -1.09
PTCH1-218ENST00000548945 HBBP68871 147 aa8.23□□□□□ -1.09
PTCH1-218ENST00000548945 GAGE6Q13070 117 aa8.23□□□□□ -1.09
PTCH1-218ENST00000548945 RIGQ13278 110 aa8.23□□□□□ -1.09
PTCH1-218ENST00000548945 LYZL1Q6UWQ5 148 aa8.23□□□□□ -1.09
PTCH1-218ENST00000548945 Q6ZRU5 148 aa8.23□□□□□ -1.09
PTCH1-218ENST00000548945 CNFNQ9BYD5 112 aa8.23□□□□□ -1.09
PTCH1-218ENST00000548945 MUC21A0A0G2JKD1 596 aa8.22□□□□□ -1.09
PTCH1-218ENST00000548945 MUC21A0A140T8X8 626 aa8.22□□□□□ -1.09
PTCH1-218ENST00000548945 A0A1B0GUV1 79 aa8.22□□□□□ -1.09
PTCH1-218ENST00000548945 A0A1B0GXF2 115 aa8.22□□□□□ -1.09
PTCH1-218ENST00000548945 PANO1I0J062 215 aa8.22□□□□□ -1.09
PTCH1-218ENST00000548945 M0QY20 66 aa8.22□□□□□ -1.09
PTCH1-218ENST00000548945 REG3AQ06141 175 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms