RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 AZU1P20160 251 aa13.06□□□□□ -0.32
VIM-209ENST00000544301 FAM104AQ969W3 186 aa13.06□□□□□ -0.32
VIM-209ENST00000544301 A0A0J9YXV3 536 aa13.06□□□□□ -0.32
VIM-209ENST00000544301 RS1O15537 224 aa13.06□□□□□ -0.32
VIM-209ENST00000544301 ZNF22P17026 224 aaPredicted RBP13.06□□□□□ -0.32
VIM-209ENST00000544301 RRN3P1Q2M238 152 aa13.06□□□□□ -0.32
VIM-209ENST00000544301 LINC01006Q8NI28 216 aa13.06□□□□□ -0.32
VIM-209ENST00000544301 TSSC4Q9Y5U2 329 aaPredicted RBP13.06□□□□□ -0.32
VIM-209ENST00000544301 ANK3Q12955 4377 aaKnown RBP13.05□□□□□ -0.32
VIM-209ENST00000544301 IGHV3-53P01767 116 aa13.05□□□□□ -0.32
VIM-209ENST00000544301 C1orf158Q8N1D5 194 aa13.05□□□□□ -0.32
VIM-209ENST00000544301 C16orf95Q9H693 158 aa13.04□□□□□ -0.32
VIM-209ENST00000544301 TMEM238LA0A1B0GVL6 79 aa13.04□□□□□ -0.32
VIM-209ENST00000544301 A6NJY4 79 aa13.04□□□□□ -0.32
VIM-209ENST00000544301 LEPROTO15243 131 aa13.04□□□□□ -0.32
VIM-209ENST00000544301 RNASE1P07998 156 aaKnown RBP13.04□□□□□ -0.32
VIM-209ENST00000544301 LGALS3P17931 250 aaKnown RBP13.04□□□□□ -0.32
VIM-209ENST00000544301 C21orf62-AS1Q17RA5 79 aa13.04□□□□□ -0.32
VIM-209ENST00000544301 WNK1Q9H4A3 2382 aa13.03□□□□□ -0.32
VIM-209ENST00000544301 K7ERU9 68 aa13.03□□□□□ -0.32
VIM-209ENST00000544301 CEMP1Q6PRD7 247 aaPredicted RBP13.03□□□□□ -0.32
VIM-209ENST00000544301 DNAJC30Q96LL9 226 aa13.03□□□□□ -0.32
VIM-209ENST00000544301 CHCHD7Q9BUK0 85 aa13.03□□□□□ -0.32
VIM-209ENST00000544301 SPANXB1Q9NS25 103 aaPredicted RBP13.03□□□□□ -0.32
VIM-209ENST00000544301 SAP30O75446 220 aa13.03□□□□□ -0.32
VIM-209ENST00000544301 UBE2D1P51668 147 aa13.03□□□□□ -0.32
VIM-209ENST00000544301 SLC25A29Q8N8R3 303 aa13.03□□□□□ -0.32
VIM-209ENST00000544301 IGHV3OR16-12A0A075B7B8 117 aa13.02□□□□□ -0.33
VIM-209ENST00000544301 PLA2G2AP14555 144 aa13.02□□□□□ -0.33
VIM-209ENST00000544301 CRYBA4P53673 196 aa13.02□□□□□ -0.33
VIM-209ENST00000544301 IL17DQ8TAD2 202 aa13.02□□□□□ -0.33
VIM-209ENST00000544301 ITPR2Q14571 2701 aa13.01□□□□□ -0.33
VIM-209ENST00000544301 NIPBLQ6KC79 2804 aaeCLIP13.01□□□□□ -0.332e-7■■□□□ 12.5
VIM-209ENST00000544301 ACANP16112 2415 aa13□□□□□ -0.33
VIM-209ENST00000544301 IGHV3-30P01768 117 aa13□□□□□ -0.33
VIM-209ENST00000544301 IGHV3-30-5P0DP03 117 aa13□□□□□ -0.33
VIM-209ENST00000544301 IGHV3-64A0A075B6Q5 118 aa13□□□□□ -0.33
VIM-209ENST00000544301 IGHV3-38A0A0C4DH36 116 aa13□□□□□ -0.33
VIM-209ENST00000544301 PCP4P48539 62 aa13□□□□□ -0.33
VIM-209ENST00000544301 MRPS36P82909 103 aaKnown RBP13□□□□□ -0.33
VIM-209ENST00000544301 SPANXA1Q9NS26 97 aa13□□□□□ -0.33
VIM-209ENST00000544301 PGPEP1Q9NXJ5 209 aa13□□□□□ -0.33
VIM-209ENST00000544301 UBE2D4Q9Y2X8 147 aa13□□□□□ -0.33
VIM-209ENST00000544301 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.99□□□□□ -0.33
VIM-209ENST00000544301 IGKV2-29A2NJV5 120 aaPredicted RBP12.99□□□□□ -0.33
VIM-209ENST00000544301 J3QKU1 62 aa12.99□□□□□ -0.33
VIM-209ENST00000544301 RNASE13Q5GAN3 156 aaKnown RBP12.99□□□□□ -0.33
VIM-209ENST00000544301 SETD2Q9BYW2 2564 aaPredicted RBP12.99□□□□□ -0.33
VIM-209ENST00000544301 TRGV1A0A0A0MS02 117 aa12.98□□□□□ -0.33
VIM-209ENST00000544301 COTL1Q14019 142 aa12.98□□□□□ -0.33
VIM-209ENST00000544301 VPS25Q9BRG1 176 aa12.98□□□□□ -0.33
VIM-209ENST00000544301 SETXQ7Z333 2677 aaKnown RBP12.97□□□□□ -0.33
VIM-209ENST00000544301 H3BMG7 143 aa12.97□□□□□ -0.33
VIM-209ENST00000544301 APOMO95445 188 aa12.96□□□□□ -0.33
VIM-209ENST00000544301 G3V4G9 280 aa12.95□□□□□ -0.34
VIM-209ENST00000544301 TSPAN13O95857 204 aa12.95□□□□□ -0.34
VIM-209ENST00000544301 CMC4P56277 68 aaPredicted RBP12.95□□□□□ -0.34
VIM-209ENST00000544301 NDUFA11Q86Y39 141 aa12.95□□□□□ -0.34
VIM-209ENST00000544301 MTORP42345 2549 aa12.95□□□□□ -0.34
VIM-209ENST00000544301 F8W1H4 67 aa12.95□□□□□ -0.34
VIM-209ENST00000544301 GIG44P09565 113 aaPredicted RBP12.95□□□□□ -0.34
VIM-209ENST00000544301 IGHV3-30-3P0DP02 117 aa12.95□□□□□ -0.34
VIM-209ENST00000544301 Q6ZUT4 128 aa12.95□□□□□ -0.34
VIM-209ENST00000544301 TMEM263Q8WUH6 116 aaKnown RBP12.95□□□□□ -0.34
VIM-209ENST00000544301 TINCRA0A1B0GVN0 87 aa12.94□□□□□ -0.34
VIM-209ENST00000544301 CFC1BP0CG36 223 aa12.94□□□□□ -0.34
VIM-209ENST00000544301 CFC1P0CG37 223 aa12.94□□□□□ -0.34
VIM-209ENST00000544301 Q6ZTI0 123 aa12.94□□□□□ -0.34
VIM-209ENST00000544301 TIMM21Q9BVV7 248 aa12.94□□□□□ -0.34
VIM-209ENST00000544301 HELZ2Q9BYK8 2649 aaKnown RBP12.94□□□□□ -0.34
VIM-209ENST00000544301 KMT2BQ9UMN6 2715 aaPredicted RBP12.94□□□□□ -0.34
VIM-209ENST00000544301 ADARB2-AS1A8MUL3 147 aa12.94□□□□□ -0.34
VIM-209ENST00000544301 IGLV1-51P01701 117 aa12.94□□□□□ -0.34
VIM-209ENST00000544301 C10orf126Q8N4M7 172 aa12.94□□□□□ -0.34
VIM-209ENST00000544301 ZNF418Q8TF45 676 aaPredicted RBP12.94□□□□□ -0.34
VIM-209ENST00000544301 UNC79Q9P2D8 2635 aa12.93□□□□□ -0.34
VIM-209ENST00000544301 HILS1P60008 231 aa12.93□□□□□ -0.34
VIM-209ENST00000544301 WFDC2Q14508 124 aa12.93□□□□□ -0.34
VIM-209ENST00000544301 WFDC10AQ9H1F0 79 aa12.93□□□□□ -0.34
VIM-209ENST00000544301 TRAV8-3A0A0A6YYJ7 113 aa12.92□□□□□ -0.34
VIM-209ENST00000544301 RPL24P83731 157 aaKnown RBP12.92□□□□□ -0.34
VIM-209ENST00000544301 C19orf73Q9NVV2 129 aa12.92□□□□□ -0.34
VIM-209ENST00000544301 IGHV1-58A0A0C4DH39 117 aa12.91□□□□□ -0.34
VIM-209ENST00000544301 A0A0J9YXY3 114 aa12.91□□□□□ -0.34
VIM-209ENST00000544301 FAM110AQ9BQ89 295 aa12.91□□□□□ -0.34
VIM-209ENST00000544301 TRAV4A0A0B4J268 109 aa12.91□□□□□ -0.34
VIM-209ENST00000544301 GAGE13Q4V321 117 aa12.91□□□□□ -0.34
VIM-209ENST00000544301 PRO0461Q9UI25 63 aa12.91□□□□□ -0.34
VIM-209ENST00000544301 TEX48A0A1B0GUV7 120 aa12.9□□□□□ -0.34
VIM-209ENST00000544301 K7EQD1 137 aa12.9□□□□□ -0.34
VIM-209ENST00000544301 NDUFA7O95182 113 aa12.9□□□□□ -0.34
VIM-209ENST00000544301 NOP10Q9NPE3 64 aaKnown RBP12.9□□□□□ -0.34
VIM-209ENST00000544301 JMJD1CQ15652 2540 aa12.89□□□□□ -0.35
VIM-209ENST00000544301 TRBV10-1A0A0K0K1A3 114 aa12.89□□□□□ -0.35
VIM-209ENST00000544301 TMEM238C9JI98 176 aa12.89□□□□□ -0.35
VIM-209ENST00000544301 RPL35AP18077 110 aaKnown RBP12.89□□□□□ -0.35
VIM-209ENST00000544301 UBE2D3P61077 147 aa12.89□□□□□ -0.35
VIM-209ENST00000544301 UBE2D2P62837 147 aa12.89□□□□□ -0.35
VIM-209ENST00000544301 DAZ2Q13117 558 aaKnown RBP12.89□□□□□ -0.35
VIM-209ENST00000544301 LOC107984156A0A0G2JMH3 177 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms