RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 SCGB3A1Q96QR1 104 aa5.99□□□□□ -1.45
PDLIM5-221ENST00000542407 TENM4Q6N022 2769 aa5.99□□□□□ -1.45
PDLIM5-221ENST00000542407 TRGV3P03979 118 aa5.99□□□□□ -1.45
PDLIM5-221ENST00000542407 HERVK_113P61574 105 aa5.99□□□□□ -1.45
PDLIM5-221ENST00000542407 PRR25Q96S07 402 aa5.99□□□□□ -1.45
PDLIM5-221ENST00000542407 LRRK2Q5S007 2527 aa5.99□□□□□ -1.45
PDLIM5-221ENST00000542407 ZNF469Q96JG9 3925 aaPredicted RBP5.98□□□□□ -1.45
PDLIM5-221ENST00000542407 EPM2AB3EWF7 344 aa5.98□□□□□ -1.45
PDLIM5-221ENST00000542407 H3BUX3 64 aa5.98□□□□□ -1.45
PDLIM5-221ENST00000542407 IGHV4-31P0DP07 118 aa5.98□□□□□ -1.45
PDLIM5-221ENST00000542407 UBE2D1P51668 147 aa5.98□□□□□ -1.45
PDLIM5-221ENST00000542407 MAPK1IP1LQ8NDC0 245 aa5.98□□□□□ -1.45
PDLIM5-221ENST00000542407 DEFB104AQ8WTQ1 72 aa5.98□□□□□ -1.45
PDLIM5-221ENST00000542407 CR1P17927 2039 aa5.98□□□□□ -1.45
PDLIM5-221ENST00000542407 TRAV41A0A0B4J266 112 aa5.97□□□□□ -1.45
PDLIM5-221ENST00000542407 TEX49A0A1B0GTD5 131 aa5.97□□□□□ -1.45
PDLIM5-221ENST00000542407 IGHG2P01859 326 aa5.97□□□□□ -1.45
PDLIM5-221ENST00000542407 PLA2G2AP14555 144 aa5.97□□□□□ -1.45
PDLIM5-221ENST00000542407 LY6EQ16553 131 aa5.97□□□□□ -1.45
PDLIM5-221ENST00000542407 Q1RN00 199 aa5.97□□□□□ -1.45
PDLIM5-221ENST00000542407 IGHV3OR16-8A0A075B7F1 116 aa5.97□□□□□ -1.45
PDLIM5-221ENST00000542407 Q6ZS46 218 aa5.97□□□□□ -1.45
PDLIM5-221ENST00000542407 CLPSL1A2RUU4 121 aa5.97□□□□□ -1.45
PDLIM5-221ENST00000542407 H3BT86 120 aa5.97□□□□□ -1.45
PDLIM5-221ENST00000542407 CFC1BP0CG36 223 aa5.97□□□□□ -1.45
PDLIM5-221ENST00000542407 CFC1P0CG37 223 aa5.97□□□□□ -1.45
PDLIM5-221ENST00000542407 P0DMU3 169 aa5.97□□□□□ -1.45
PDLIM5-221ENST00000542407 FAM231AP0DMU4 169 aa5.97□□□□□ -1.45
PDLIM5-221ENST00000542407 FAM231CP0DMU5 169 aa5.97□□□□□ -1.45
PDLIM5-221ENST00000542407 NPC2P61916 151 aa5.97□□□□□ -1.45
PDLIM5-221ENST00000542407 ERCC8Q13216 396 aa5.97□□□□□ -1.45
PDLIM5-221ENST00000542407 LYPD1Q8N2G4 141 aa5.97□□□□□ -1.45
PDLIM5-221ENST00000542407 RNF182Q8N6D2 247 aa5.97□□□□□ -1.45
PDLIM5-221ENST00000542407 SPG11Q96JI7 2443 aa5.96□□□□□ -1.45
PDLIM5-221ENST00000542407 IGLV2-18A0A075B6J9 118 aa5.96□□□□□ -1.46
PDLIM5-221ENST00000542407 CFHR3Q02985 330 aa5.96□□□□□ -1.46
PDLIM5-221ENST00000542407 DAZ2Q13117 558 aaKnown RBP5.96□□□□□ -1.46
PDLIM5-221ENST00000542407 DEFB112Q30KQ8 113 aa5.96□□□□□ -1.46
PDLIM5-221ENST00000542407 DAZ4Q86SG3 579 aaKnown RBP5.96□□□□□ -1.46
PDLIM5-221ENST00000542407 DAZ1Q9NQZ3 744 aaKnown RBP5.96□□□□□ -1.46
PDLIM5-221ENST00000542407 DAZ3Q9NR90 486 aaKnown RBP5.96□□□□□ -1.46
PDLIM5-221ENST00000542407 SMAD5-AS1Q9Y6J3 95 aa5.96□□□□□ -1.46
PDLIM5-221ENST00000542407 TRBV7-1A0A0A6YYK4 115 aa5.96□□□□□ -1.46
PDLIM5-221ENST00000542407 LINC01546A6NGU7 62 aa5.96□□□□□ -1.46
PDLIM5-221ENST00000542407 FAM223BA6NKX1 122 aa5.96□□□□□ -1.46
PDLIM5-221ENST00000542407 LINC01619G3V211 115 aa5.96□□□□□ -1.46
PDLIM5-221ENST00000542407 FAM229AH3BQW9 127 aa5.96□□□□□ -1.46
PDLIM5-221ENST00000542407 LGALS9O00182 355 aa5.96□□□□□ -1.46
PDLIM5-221ENST00000542407 BLCAPP62952 87 aa5.96□□□□□ -1.46
PDLIM5-221ENST00000542407 C9orf139Q6ZV77 190 aa5.96□□□□□ -1.46
PDLIM5-221ENST00000542407 FAM223AQ8IWN6 122 aa5.96□□□□□ -1.46
PDLIM5-221ENST00000542407 PRO1854Q9UHT4 67 aa5.96□□□□□ -1.46
PDLIM5-221ENST00000542407 USP9YO00507 2555 aaPredicted RBP5.96□□□□□ -1.46
PDLIM5-221ENST00000542407 ANKRD17O75179 2603 aaKnown RBP5.96□□□□□ -1.46
PDLIM5-221ENST00000542407 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.96□□□□□ -1.464e-6■□□□□ 9.7
PDLIM5-221ENST00000542407 CENPEQ02224 2701 aa5.95□□□□□ -1.46
PDLIM5-221ENST00000542407 FAM208BQ5VWN6 2430 aa5.95□□□□□ -1.46
PDLIM5-221ENST00000542407 ATOX1O00244 68 aa5.95□□□□□ -1.46
PDLIM5-221ENST00000542407 VPREB1P12018 145 aa5.95□□□□□ -1.46
PDLIM5-221ENST00000542407 TMEM190Q8WZ59 177 aa5.95□□□□□ -1.46
PDLIM5-221ENST00000542407 EEF1AKMT3Q96AZ1 226 aa5.95□□□□□ -1.46
PDLIM5-221ENST00000542407 SMIM26A0A096LP01 95 aa5.95□□□□□ -1.46
PDLIM5-221ENST00000542407 IGHV4-59P01825 116 aa5.95□□□□□ -1.46
PDLIM5-221ENST00000542407 PDE6HQ13956 83 aa5.95□□□□□ -1.46
PDLIM5-221ENST00000542407 SPANXN1Q5VSR9 72 aa5.95□□□□□ -1.46
PDLIM5-221ENST00000542407 CLEC19AQ6UXS0 136 aa5.95□□□□□ -1.46
PDLIM5-221ENST00000542407 Q6ZRU5 148 aa5.95□□□□□ -1.46
PDLIM5-221ENST00000542407 ZNF580Q9UK33 172 aa5.95□□□□□ -1.46
PDLIM5-221ENST00000542407 SERP1Q9Y6X1 66 aa5.95□□□□□ -1.46
PDLIM5-221ENST00000542407 AKAP9Q99996 3911 aa5.95□□□□□ -1.46
PDLIM5-221ENST00000542407 IGHV3-35A0A0C4DH35 117 aa5.94□□□□□ -1.46
PDLIM5-221ENST00000542407 FAM240AA0A1B0GVK7 77 aa5.94□□□□□ -1.46
PDLIM5-221ENST00000542407 H3BUA1 57 aa5.94□□□□□ -1.46
PDLIM5-221ENST00000542407 PAX4O43316 350 aa5.94□□□□□ -1.46
PDLIM5-221ENST00000542407 IGLV1-40P01703 118 aa5.94□□□□□ -1.46
PDLIM5-221ENST00000542407 APCP25054 2843 aa5.94□□□□□ -1.46
PDLIM5-221ENST00000542407 POLQO75417 2590 aa5.94□□□□□ -1.46
PDLIM5-221ENST00000542407 APOC4P55056 127 aa5.94□□□□□ -1.46
PDLIM5-221ENST00000542407 NRACQ8N912 160 aa5.94□□□□□ -1.46
PDLIM5-221ENST00000542407 UPK3BQ9BT76 320 aa5.94□□□□□ -1.46
PDLIM5-221ENST00000542407 CHD6Q8TD26 2715 aa5.94□□□□□ -1.46
PDLIM5-221ENST00000542407 TRAV12-1A0A0B4J245 112 aa5.94□□□□□ -1.46
PDLIM5-221ENST00000542407 A0A0J9YY99 117 aa5.94□□□□□ -1.46
PDLIM5-221ENST00000542407 HOXD3P31249 432 aaPredicted RBP5.94□□□□□ -1.46
PDLIM5-221ENST00000542407 CD164L2Q6UWJ8 174 aa5.94□□□□□ -1.46
PDLIM5-221ENST00000542407 FP248Q71RG6 208 aaPredicted RBP5.94□□□□□ -1.46
PDLIM5-221ENST00000542407 ZNF575Q86XF7 245 aa5.94□□□□□ -1.46
PDLIM5-221ENST00000542407 BUB3O43684 328 aa5.93□□□□□ -1.46
PDLIM5-221ENST00000542407 TRBV12-3P01733 135 aa5.93□□□□□ -1.46
PDLIM5-221ENST00000542407 ZANQ9Y493 2812 aa5.93□□□□□ -1.46
PDLIM5-221ENST00000542407 PRRC2AP48634 2157 aaKnown RBP5.93□□□□□ -1.46
PDLIM5-221ENST00000542407 MAP1AP78559 2803 aaPredicted RBP5.93□□□□□ -1.46
PDLIM5-221ENST00000542407 PTPN13Q12923 2485 aa5.93□□□□□ -1.46
PDLIM5-221ENST00000542407 NDUFC2-KCTD14E9PQ53 114 aa5.93□□□□□ -1.46
PDLIM5-221ENST00000542407 J3QKU1 62 aa5.93□□□□□ -1.46
PDLIM5-221ENST00000542407 K7EMT4 169 aa5.93□□□□□ -1.46
PDLIM5-221ENST00000542407 TMEM170BQ5T4T1 132 aa5.93□□□□□ -1.46
PDLIM5-221ENST00000542407 C2orf66Q6UXQ4 117 aa5.93□□□□□ -1.46
PDLIM5-221ENST00000542407 IGHV3-30P01768 117 aa5.92□□□□□ -1.46
PDLIM5-221ENST00000542407 IGHV3-30-5P0DP03 117 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms