RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 TIMM21Q9BVV7 248 aa14.19□□□□□ -0.14
PCF11-203ENST00000530304 A0A0B4J2C4 111 aa14.18□□□□□ -0.14
PCF11-203ENST00000530304 ADARB2-AS1A8MUL3 147 aa14.18□□□□□ -0.14
PCF11-203ENST00000530304 CRYBA4P53673 196 aa14.18□□□□□ -0.14
PCF11-203ENST00000530304 TMEM61Q8N0U2 210 aa14.18□□□□□ -0.14
PCF11-203ENST00000530304 CARD19Q96LW7 228 aa14.18□□□□□ -0.14
PCF11-203ENST00000530304 TRAV8-3A0A0A6YYJ7 113 aa14.18□□□□□ -0.14
PCF11-203ENST00000530304 IGHV4-31P0DP07 118 aa14.18□□□□□ -0.14
PCF11-203ENST00000530304 ERG28Q9UKR5 140 aa14.18□□□□□ -0.14
PCF11-203ENST00000530304 NACAE9PAV3 2078 aa14.18□□□□□ -0.14
PCF11-203ENST00000530304 H7C2G1 150 aa14.17□□□□□ -0.14
PCF11-203ENST00000530304 PPDPFLQ8WWR9 84 aa14.17□□□□□ -0.14
PCF11-203ENST00000530304 ZNF415Q09FC8 603 aa14.17□□□□□ -0.14
PCF11-203ENST00000530304 CDIP1Q9H305 208 aa14.17□□□□□ -0.14
PCF11-203ENST00000530304 POLQO75417 2590 aa14.17□□□□□ -0.14
PCF11-203ENST00000530304 CHCHD7Q9BUK0 85 aa14.16□□□□□ -0.14
PCF11-203ENST00000530304 PIK3CD-AS1Q5SR53 167 aa14.16□□□□□ -0.14
PCF11-203ENST00000530304 MYO18BQ8IUG5 2567 aa14.16□□□□□ -0.14
PCF11-203ENST00000530304 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.15□□□□□ -0.14
PCF11-203ENST00000530304 PEMTQ9UBM1 199 aa14.15□□□□□ -0.14
PCF11-203ENST00000530304 UBE2D4Q9Y2X8 147 aa14.15□□□□□ -0.14
PCF11-203ENST00000530304 IGHV1-58A0A0C4DH39 117 aa14.15□□□□□ -0.14
PCF11-203ENST00000530304 FHL3Q13643 280 aa14.15□□□□□ -0.14
PCF11-203ENST00000530304 LINC01587Q99440 93 aa14.14□□□□□ -0.15
PCF11-203ENST00000530304 LITAFQ99732 161 aa14.14□□□□□ -0.15
PCF11-203ENST00000530304 MAP6D1Q9H9H5 199 aa14.14□□□□□ -0.15
PCF11-203ENST00000530304 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.14□□□□□ -0.15
PCF11-203ENST00000530304 IGKV2-29A2NJV5 120 aaPredicted RBP14.14□□□□□ -0.15
PCF11-203ENST00000530304 ANKRD29Q8N6D5 301 aa14.13□□□□□ -0.15
PCF11-203ENST00000530304 C11orf72Q8NBR9 251 aa14.13□□□□□ -0.15
PCF11-203ENST00000530304 PRRC2AP48634 2157 aaKnown RBP14.13□□□□□ -0.15
PCF11-203ENST00000530304 TINCRA0A1B0GVN0 87 aa14.13□□□□□ -0.15
PCF11-203ENST00000530304 SPANXA1Q9NS26 97 aa14.13□□□□□ -0.15
PCF11-203ENST00000530304 Q8N2B8 174 aa14.12□□□□□ -0.15
PCF11-203ENST00000530304 IGHV3-38A0A0C4DH36 116 aa14.12□□□□□ -0.15
PCF11-203ENST00000530304 Q1RN00 199 aa14.12□□□□□ -0.15
PCF11-203ENST00000530304 C9JAW5 83 aa14.11□□□□□ -0.15
PCF11-203ENST00000530304 SLC25A20O43772 301 aa14.11□□□□□ -0.15
PCF11-203ENST00000530304 PRSS2P07478 247 aa14.11□□□□□ -0.15
PCF11-203ENST00000530304 KHDC1LQ5JSQ8 128 aa14.11□□□□□ -0.15
PCF11-203ENST00000530304 ADAMTSL4-AS1Q5T5F5 129 aa14.11□□□□□ -0.15
PCF11-203ENST00000530304 C4orf3Q8WVX3 66 aa14.11□□□□□ -0.15
PCF11-203ENST00000530304 VSIG2Q96IQ7 327 aa14.11□□□□□ -0.15
PCF11-203ENST00000530304 LINC00467Q9BRT7 94 aa14.11□□□□□ -0.15
PCF11-203ENST00000530304 NDUFA12Q9UI09 145 aa14.11□□□□□ -0.15
PCF11-203ENST00000530304 CR1P17927 2039 aa14.11□□□□□ -0.15
PCF11-203ENST00000530304 CACNA1AO00555 2505 aa14.11□□□□□ -0.15
PCF11-203ENST00000530304 A8MZ25 164 aa14.11□□□□□ -0.15
PCF11-203ENST00000530304 HIST2H2BDQ6DRA6 164 aa14.11□□□□□ -0.15
PCF11-203ENST00000530304 DYNLRB2Q8TF09 96 aa14.11□□□□□ -0.15
PCF11-203ENST00000530304 IGHV3-53P01767 116 aa14.11□□□□□ -0.15
PCF11-203ENST00000530304 SPINK8P0C7L1 97 aa14.11□□□□□ -0.15
PCF11-203ENST00000530304 Q6ZUT4 128 aa14.11□□□□□ -0.15
PCF11-203ENST00000530304 CENPEQ02224 2701 aa14.1□□□□□ -0.15
PCF11-203ENST00000530304 ACACBO00763 2458 aa14.09□□□□□ -0.15
PCF11-203ENST00000530304 A0A1B0GV72 72 aa14.09□□□□□ -0.15
PCF11-203ENST00000530304 DEFB114Q30KQ6 69 aa14.09□□□□□ -0.15
PCF11-203ENST00000530304 DNAJC30Q96LL9 226 aa14.09□□□□□ -0.15
PCF11-203ENST00000530304 BEAN1Q3B7T3 259 aa14.09□□□□□ -0.15
PCF11-203ENST00000530304 INSP01308 110 aa14.08□□□□□ -0.16
PCF11-203ENST00000530304 SPANXDQ9BXN6 97 aa14.08□□□□□ -0.16
PCF11-203ENST00000530304 SPANXCQ9NY87 97 aa14.08□□□□□ -0.16
PCF11-203ENST00000530304 KRTAP10-9P60411 292 aa14.08□□□□□ -0.16
PCF11-203ENST00000530304 TEX15Q9BXT5 2789 aa14.08□□□□□ -0.16
PCF11-203ENST00000530304 MT-ATP8P03928 68 aa14.07□□□□□ -0.16
PCF11-203ENST00000530304 PRB1P04280 392 aa14.07□□□□□ -0.16
PCF11-203ENST00000530304 M0QXV9 152 aa14.07□□□□□ -0.16
PCF11-203ENST00000530304 RS1O15537 224 aa14.07□□□□□ -0.16
PCF11-203ENST00000530304 XGP55808 180 aa14.07□□□□□ -0.16
PCF11-203ENST00000530304 ATXN8Q156A1 80 aa14.07□□□□□ -0.16
PCF11-203ENST00000530304 GEMIN7Q9H840 131 aaKnown RBP14.07□□□□□ -0.16
PCF11-203ENST00000530304 FAM208BQ5VWN6 2430 aa14.06□□□□□ -0.16
PCF11-203ENST00000530304 TRBV30A0A0K0K1B3 111 aa14.06□□□□□ -0.16
PCF11-203ENST00000530304 TRIAP1O43715 76 aa14.06□□□□□ -0.16
PCF11-203ENST00000530304 MIAQ16674 131 aa14.06□□□□□ -0.16
PCF11-203ENST00000530304 NPC2P61916 151 aa14.05□□□□□ -0.16
PCF11-203ENST00000530304 ZFAND6Q6FIF0 208 aa14.05□□□□□ -0.16
PCF11-203ENST00000530304 XCL2Q9UBD3 114 aa14.05□□□□□ -0.16
PCF11-203ENST00000530304 CDKN2A-AS1Q9UH64 79 aa14.04□□□□□ -0.16
PCF11-203ENST00000530304 AKAP9Q99996 3911 aa14.04□□□□□ -0.16
PCF11-203ENST00000530304 LINC01620Q4KN68 170 aa14.04□□□□□ -0.16
PCF11-203ENST00000530304 ZNF469Q96JG9 3925 aaPredicted RBP14.03□□□□□ -0.16
PCF11-203ENST00000530304 CKS1BP61024 79 aa14.03□□□□□ -0.16
PCF11-203ENST00000530304 DEFB113Q30KQ7 82 aa14.02□□□□□ -0.17
PCF11-203ENST00000530304 DGAT2L7PQ6IED9 249 aa14.02□□□□□ -0.17
PCF11-203ENST00000530304 Q6ZSV7 163 aa14.02□□□□□ -0.17
PCF11-203ENST00000530304 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.02□□□□□ -0.17
PCF11-203ENST00000530304 IGHV3OR16-12A0A075B7B8 117 aa14.01□□□□□ -0.17
PCF11-203ENST00000530304 TIRAPP58753 221 aa14.01□□□□□ -0.17
PCF11-203ENST00000530304 ODF3L2Q3SX64 289 aa14.01□□□□□ -0.17
PCF11-203ENST00000530304 ICOSQ9Y6W8 199 aa14.01□□□□□ -0.17
PCF11-203ENST00000530304 MYO9AB2RTY4 2548 aa14.01□□□□□ -0.17
PCF11-203ENST00000530304 CLUHP3Q96NS8 147 aa14.01□□□□□ -0.17
PCF11-203ENST00000530304 PTPN13Q12923 2485 aa14□□□□□ -0.17
PCF11-203ENST00000530304 IGLV5-45A0A087WSX0 123 aa14□□□□□ -0.17
PCF11-203ENST00000530304 COX6A2Q02221 97 aa14□□□□□ -0.17
PCF11-203ENST00000530304 TMEM101Q96IK0 257 aa14□□□□□ -0.17
PCF11-203ENST00000530304 Q96MF0 132 aa14□□□□□ -0.17
PCF11-203ENST00000530304 TMEM262E9PQX1 116 aa14□□□□□ -0.17
PCF11-203ENST00000530304 STHQ8IWL8 128 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms