RNA–Protein interactions for RNA: ENST00000527720.5

USH1C-207, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,278 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-207ENST00000527720 C11orf44Q8N8P7 122 aa11.14□□□□□ -0.63
USH1C-207ENST00000527720 ZNF479Q96JC4 524 aa11.14□□□□□ -0.63
USH1C-207ENST00000527720 J3QKU1 62 aa11.13□□□□□ -0.63
USH1C-207ENST00000527720 J3QQQ9 107 aa11.13□□□□□ -0.63
USH1C-207ENST00000527720 LEPROTO15243 131 aa11.13□□□□□ -0.63
USH1C-207ENST00000527720 SRSF9Q13242 221 aaKnown RBP eCLIP11.13□□□□□ -0.63
USH1C-207ENST00000527720 XCL2Q9UBD3 114 aa11.13□□□□□ -0.63
USH1C-207ENST00000527720 K7ERU9 68 aa11.12□□□□□ -0.63
USH1C-207ENST00000527720 CIDEAO60543 219 aa11.12□□□□□ -0.63
USH1C-207ENST00000527720 LGALS3P17931 250 aaKnown RBP11.12□□□□□ -0.63
USH1C-207ENST00000527720 Q6ZSN1 163 aa11.12□□□□□ -0.63
USH1C-207ENST00000527720 IL17DQ8TAD2 202 aa11.12□□□□□ -0.63
USH1C-207ENST00000527720 MRPL16Q9NX20 251 aaKnown RBP11.12□□□□□ -0.63
USH1C-207ENST00000527720 TENM4Q6N022 2769 aa11.12□□□□□ -0.63
USH1C-207ENST00000527720 CHD6Q8TD26 2715 aa11.12□□□□□ -0.63
USH1C-207ENST00000527720 PDZD2O15018 2839 aa11.12□□□□□ -0.63
USH1C-207ENST00000527720 ZNF22P17026 224 aaPredicted RBP11.12□□□□□ -0.63
USH1C-207ENST00000527720 TSPEAR-AS2P59090 65 aa11.12□□□□□ -0.63
USH1C-207ENST00000527720 RRN3P1Q2M238 152 aa11.12□□□□□ -0.63
USH1C-207ENST00000527720 SPANXA1Q9NS26 97 aa11.12□□□□□ -0.63
USH1C-207ENST00000527720 WNK1Q9H4A3 2382 aa11.11□□□□□ -0.63
USH1C-207ENST00000527720 C1orf158Q8N1D5 194 aa11.11□□□□□ -0.63
USH1C-207ENST00000527720 SLC25A29Q8N8R3 303 aa11.11□□□□□ -0.63
USH1C-207ENST00000527720 FAM110AQ9BQ89 295 aa11.11□□□□□ -0.63
USH1C-207ENST00000527720 CHCHD7Q9BUK0 85 aa11.11□□□□□ -0.63
USH1C-207ENST00000527720 UBE2D1P51668 147 aa11.1□□□□□ -0.63
USH1C-207ENST00000527720 MRPS36P82909 103 aaKnown RBP11.1□□□□□ -0.63
USH1C-207ENST00000527720 FAM104AQ969W3 186 aa11.1□□□□□ -0.63
USH1C-207ENST00000527720 A0A0J9YXV3 536 aa11.1□□□□□ -0.63
USH1C-207ENST00000527720 ZNF418Q8TF45 676 aaPredicted RBP11.1□□□□□ -0.63
USH1C-207ENST00000527720 AZU1P20160 251 aa11.09□□□□□ -0.63
USH1C-207ENST00000527720 CCDC168Q8NDH2 2452 aa11.09□□□□□ -0.63
USH1C-207ENST00000527720 UBE2D4Q9Y2X8 147 aa11.09□□□□□ -0.63
USH1C-207ENST00000527720 HILS1P60008 231 aa11.08□□□□□ -0.64
USH1C-207ENST00000527720 TMEM263Q8WUH6 116 aaKnown RBP11.08□□□□□ -0.64
USH1C-207ENST00000527720 Q9UF83 564 aa11.08□□□□□ -0.64
USH1C-207ENST00000527720 NDUFA7O95182 113 aa11.07□□□□□ -0.64
USH1C-207ENST00000527720 IGHV3-30P01768 117 aa11.07□□□□□ -0.64
USH1C-207ENST00000527720 IGHV3-30-5P0DP03 117 aa11.07□□□□□ -0.64
USH1C-207ENST00000527720 SAP30O75446 220 aa11.07□□□□□ -0.64
USH1C-207ENST00000527720 IGLV1-51P01701 117 aa11.06□□□□□ -0.64
USH1C-207ENST00000527720 NF1P21359 2839 aa11.06□□□□□ -0.64
USH1C-207ENST00000527720 IGHV3OR16-12A0A075B7B8 117 aa11.06□□□□□ -0.64
USH1C-207ENST00000527720 TINCRA0A1B0GVN0 87 aa11.06□□□□□ -0.64
USH1C-207ENST00000527720 TRGV1A0A0A0MS02 117 aa11.05□□□□□ -0.64
USH1C-207ENST00000527720 TRBV10-1A0A0K0K1A3 114 aa11.05□□□□□ -0.64
USH1C-207ENST00000527720 F8W1H4 67 aa11.05□□□□□ -0.64
USH1C-207ENST00000527720 TIMM21Q9BVV7 248 aa11.05□□□□□ -0.64
USH1C-207ENST00000527720 PGPEP1Q9NXJ5 209 aa11.05□□□□□ -0.64
USH1C-207ENST00000527720 TRAV4A0A0B4J268 109 aa11.05□□□□□ -0.64
USH1C-207ENST00000527720 RNF151Q2KHN1 245 aa11.05□□□□□ -0.64
USH1C-207ENST00000527720 CEMP1Q6PRD7 247 aaPredicted RBP11.04□□□□□ -0.64
USH1C-207ENST00000527720 DAZ2Q13117 558 aaKnown RBP11.04□□□□□ -0.64
USH1C-207ENST00000527720 NDUFA11Q86Y39 141 aa11.04□□□□□ -0.64
USH1C-207ENST00000527720 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.03□□□□□ -0.64
USH1C-207ENST00000527720 IGKV2-29A2NJV5 120 aaPredicted RBP11.03□□□□□ -0.64
USH1C-207ENST00000527720 ADARB2-AS1A8MUL3 147 aa11.03□□□□□ -0.64
USH1C-207ENST00000527720 IGHV3-30-3P0DP02 117 aa11.03□□□□□ -0.64
USH1C-207ENST00000527720 C1QTNF4Q9BXJ3 329 aa11.03□□□□□ -0.64
USH1C-207ENST00000527720 IGHV3-38A0A0C4DH36 116 aa11.02□□□□□ -0.64
USH1C-207ENST00000527720 IGHV1-58A0A0C4DH39 117 aa11.02□□□□□ -0.64
USH1C-207ENST00000527720 TMEM238C9JI98 176 aa11.02□□□□□ -0.64
USH1C-207ENST00000527720 K7EQD1 137 aa11.02□□□□□ -0.64
USH1C-207ENST00000527720 C16orf74Q96GX8 76 aa11.02□□□□□ -0.64
USH1C-207ENST00000527720 C19orf73Q9NVV2 129 aa11.02□□□□□ -0.64
USH1C-207ENST00000527720 KMT2BQ9UMN6 2715 aaPredicted RBP11.02□□□□□ -0.65
USH1C-207ENST00000527720 G3V4G9 280 aa11.02□□□□□ -0.65
USH1C-207ENST00000527720 GIG44P09565 113 aaPredicted RBP11.02□□□□□ -0.65
USH1C-207ENST00000527720 RPL36AP83881 106 aaKnown RBP11.02□□□□□ -0.65
USH1C-207ENST00000527720 LYRM7Q5U5X0 104 aa11.02□□□□□ -0.65
USH1C-207ENST00000527720 CFAP161Q6P656 301 aa11.02□□□□□ -0.65
USH1C-207ENST00000527720 RPL36ALQ969Q0 106 aaKnown RBP11.02□□□□□ -0.65
USH1C-207ENST00000527720 VPS25Q9BRG1 176 aa11.02□□□□□ -0.65
USH1C-207ENST00000527720 TSPAN13O95857 204 aa11.01□□□□□ -0.65
USH1C-207ENST00000527720 Q6ZTI0 123 aa11.01□□□□□ -0.65
USH1C-207ENST00000527720 Q6ZUT4 128 aa11.01□□□□□ -0.65
USH1C-207ENST00000527720 DAZ4Q86SG3 579 aaKnown RBP11.01□□□□□ -0.65
USH1C-207ENST00000527720 DAZ3Q9NR90 486 aaKnown RBP11.01□□□□□ -0.65
USH1C-207ENST00000527720 IGHV3-64A0A075B6Q5 118 aa11.01□□□□□ -0.65
USH1C-207ENST00000527720 H3BMG7 143 aa11.01□□□□□ -0.65
USH1C-207ENST00000527720 APOMO95445 188 aa11.01□□□□□ -0.65
USH1C-207ENST00000527720 ANK3Q12955 4377 aaKnown RBP11.01□□□□□ -0.65
USH1C-207ENST00000527720 CFC1BP0CG36 223 aa11□□□□□ -0.65
USH1C-207ENST00000527720 CFC1P0CG37 223 aa11□□□□□ -0.65
USH1C-207ENST00000527720 TIRAPP58753 221 aa11□□□□□ -0.65
USH1C-207ENST00000527720 RPL24P83731 157 aaKnown RBP11□□□□□ -0.65
USH1C-207ENST00000527720 C10orf126Q8N4M7 172 aa11□□□□□ -0.65
USH1C-207ENST00000527720 CUBNO60494 3623 aa11□□□□□ -0.65
USH1C-207ENST00000527720 ACANP16112 2415 aa11□□□□□ -0.65
USH1C-207ENST00000527720 A0A0J9YXY3 114 aa11□□□□□ -0.65
USH1C-207ENST00000527720 RNASE13Q5GAN3 156 aaKnown RBP11□□□□□ -0.65
USH1C-207ENST00000527720 UBE2D3P61077 147 aa10.99□□□□□ -0.65
USH1C-207ENST00000527720 UBE2D2P62837 147 aa10.99□□□□□ -0.65
USH1C-207ENST00000527720 SMAGPQ0VAQ4 97 aa10.99□□□□□ -0.65
USH1C-207ENST00000527720 GAGE13Q4V321 117 aa10.99□□□□□ -0.65
USH1C-207ENST00000527720 DGAT2L7PQ6IED9 249 aa10.99□□□□□ -0.65
USH1C-207ENST00000527720 VSIG2Q96IQ7 327 aa10.99□□□□□ -0.65
USH1C-207ENST00000527720 CSDC2Q9Y534 153 aaKnown RBP10.99□□□□□ -0.65
USH1C-207ENST00000527720 ITPR2Q14571 2701 aa10.99□□□□□ -0.65
USH1C-207ENST00000527720 IGLV5-45A0A087WSX0 123 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 219.4 ms