RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 LINC00269Q8N2A0 174 aa12.22□□□□□ -0.45
PCDHA3-201ENST00000522353 LINC00482Q8N8I6 264 aa12.22□□□□□ -0.45
PCDHA3-201ENST00000522353 ZNF702PQ9H963 129 aa12.22□□□□□ -0.45
PCDHA3-201ENST00000522353 PRRC2AP48634 2157 aaKnown RBP12.21□□□□□ -0.45
PCDHA3-201ENST00000522353 IGHV4-28A0A0C4DH34 117 aa12.21□□□□□ -0.45
PCDHA3-201ENST00000522353 BRWD1-AS2P59051 145 aa12.21□□□□□ -0.45
PCDHA3-201ENST00000522353 RS1O15537 224 aa12.21□□□□□ -0.46
PCDHA3-201ENST00000522353 NREPQ16612 68 aa12.21□□□□□ -0.46
PCDHA3-201ENST00000522353 DAND5Q8N907 189 aa12.21□□□□□ -0.46
PCDHA3-201ENST00000522353 FXYD2P54710 66 aa12.21□□□□□ -0.46
PCDHA3-201ENST00000522353 FAM110AQ9BQ89 295 aa12.21□□□□□ -0.46
PCDHA3-201ENST00000522353 COL4A4P53420 1690 aaPredicted RBP12.21□□□□□ -0.46
PCDHA3-201ENST00000522353 H7C423 109 aa12.2□□□□□ -0.46
PCDHA3-201ENST00000522353 PSMB8P28062 276 aa12.2□□□□□ -0.46
PCDHA3-201ENST00000522353 HIGD2BQ4VC39 106 aa12.2□□□□□ -0.46
PCDHA3-201ENST00000522353 ZFAND2AQ8N6M9 145 aa12.2□□□□□ -0.46
PCDHA3-201ENST00000522353 CHD8Q9HCK8 2581 aa12.2□□□□□ -0.46
PCDHA3-201ENST00000522353 TNRC6AQ8NDV7 1962 aaKnown RBP12.2□□□□□ -0.46
PCDHA3-201ENST00000522353 Q6ZUT4 128 aa12.2□□□□□ -0.46
PCDHA3-201ENST00000522353 A0A0B4J2C4 111 aa12.19□□□□□ -0.46
PCDHA3-201ENST00000522353 ZNF80P51504 273 aaPredicted RBP12.19□□□□□ -0.46
PCDHA3-201ENST00000522353 TEN1Q86WV5 123 aa12.19□□□□□ -0.46
PCDHA3-201ENST00000522353 TP53TG3Q9ULZ0 132 aa12.19□□□□□ -0.46
PCDHA3-201ENST00000522353 ZFAND3Q9H8U3 227 aa12.19□□□□□ -0.46
PCDHA3-201ENST00000522353 ZFYVE26Q68DK2 2539 aa12.19□□□□□ -0.46
PCDHA3-201ENST00000522353 TTTY13Q9BZ97 58 aa12.18□□□□□ -0.46
PCDHA3-201ENST00000522353 LECT2O14960 151 aa12.18□□□□□ -0.46
PCDHA3-201ENST00000522353 TMEM258P61165 79 aa12.18□□□□□ -0.46
PCDHA3-201ENST00000522353 ALPK3Q96L96 1907 aa12.17□□□□□ -0.46
PCDHA3-201ENST00000522353 A0A1B0GXF2 115 aa12.17□□□□□ -0.46
PCDHA3-201ENST00000522353 RBM3P98179 157 aaKnown RBP12.17□□□□□ -0.46
PCDHA3-201ENST00000522353 TDRG1Q3Y452 100 aa12.17□□□□□ -0.46
PCDHA3-201ENST00000522353 C10orf99Q6UWK7 81 aa12.17□□□□□ -0.46
PCDHA3-201ENST00000522353 CHCHD10Q8WYQ3 142 aaPredicted RBP12.17□□□□□ -0.46
PCDHA3-201ENST00000522353 OBSL1O75147 1896 aa12.17□□□□□ -0.46
PCDHA3-201ENST00000522353 TRBV6-4A0A1B0GX49 114 aa12.17□□□□□ -0.46
PCDHA3-201ENST00000522353 C1orf229Q6ZS94 237 aaPredicted RBP12.17□□□□□ -0.46
PCDHA3-201ENST00000522353 H3BT86 120 aa12.17□□□□□ -0.46
PCDHA3-201ENST00000522353 KIR2DL5BQ8NHK3 375 aa12.17□□□□□ -0.46
PCDHA3-201ENST00000522353 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.16□□□□□ -0.46
PCDHA3-201ENST00000522353 COX7BP24311 80 aa12.16□□□□□ -0.46
PCDHA3-201ENST00000522353 MP68P56378 58 aa12.16□□□□□ -0.46
PCDHA3-201ENST00000522353 IGLC6P0CF74 106 aa12.16□□□□□ -0.46
PCDHA3-201ENST00000522353 P0DMU3 169 aa12.16□□□□□ -0.46
PCDHA3-201ENST00000522353 FAM231AP0DMU4 169 aa12.16□□□□□ -0.46
PCDHA3-201ENST00000522353 FAM231CP0DMU5 169 aa12.16□□□□□ -0.46
PCDHA3-201ENST00000522353 SPATA12Q7Z6I5 190 aa12.15□□□□□ -0.46
PCDHA3-201ENST00000522353 NFE4Q86UQ8 179 aa12.15□□□□□ -0.46
PCDHA3-201ENST00000522353 CEMP1Q6PRD7 247 aaPredicted RBP12.15□□□□□ -0.46
PCDHA3-201ENST00000522353 Q6ZPA2 131 aa12.15□□□□□ -0.47
PCDHA3-201ENST00000522353 Q8N6K4 173 aa12.15□□□□□ -0.47
PCDHA3-201ENST00000522353 MBD6Q96DN6 1003 aa12.15□□□□□ -0.47
PCDHA3-201ENST00000522353 HIGD2AQ9BW72 106 aa12.15□□□□□ -0.47
PCDHA3-201ENST00000522353 TRBV10-2A0A0K0K1G8 114 aa12.14□□□□□ -0.47
PCDHA3-201ENST00000522353 A0A1B0GX51 115 aa12.14□□□□□ -0.47
PCDHA3-201ENST00000522353 EIF4EBP1Q13541 118 aaPredicted RBP12.14□□□□□ -0.47
PCDHA3-201ENST00000522353 FRMD6-AS1P0C7T7 363 aa12.14□□□□□ -0.47
PCDHA3-201ENST00000522353 C20orf173Q96LM9 149 aa12.14□□□□□ -0.47
PCDHA3-201ENST00000522353 PDE6GP18545 87 aa12.14□□□□□ -0.47
PCDHA3-201ENST00000522353 IGLV2-8P01709 118 aa12.14□□□□□ -0.47
PCDHA3-201ENST00000522353 MLST8Q9BVC4 326 aa12.13□□□□□ -0.47
PCDHA3-201ENST00000522353 TMEM256-PLSCR3K7ERE1 68 aa12.13□□□□□ -0.47
PCDHA3-201ENST00000522353 ATOX1O00244 68 aa12.12□□□□□ -0.47
PCDHA3-201ENST00000522353 NDUFA7O95182 113 aa12.12□□□□□ -0.47
PCDHA3-201ENST00000522353 TRBV6-8A0A0A6YYG3 113 aa12.12□□□□□ -0.47
PCDHA3-201ENST00000522353 A0A087WZ39 114 aa12.12□□□□□ -0.47
PCDHA3-201ENST00000522353 MIAQ16674 131 aa12.11□□□□□ -0.47
PCDHA3-201ENST00000522353 CRIP3Q6Q6R5 217 aa12.11□□□□□ -0.47
PCDHA3-201ENST00000522353 LINC00322Q6ZN03 302 aaPredicted RBP12.11□□□□□ -0.47
PCDHA3-201ENST00000522353 C10orf142B7Z368 130 aa12.11□□□□□ -0.47
PCDHA3-201ENST00000522353 CFAP126Q5VTH2 177 aa12.11□□□□□ -0.47
PCDHA3-201ENST00000522353 IGKV3D-7A0A0C4DH55 119 aa12.1□□□□□ -0.47
PCDHA3-201ENST00000522353 NEXN-AS1Q8NBZ9 246 aa12.1□□□□□ -0.47
PCDHA3-201ENST00000522353 C7orf33Q8WU49 177 aa12.1□□□□□ -0.47
PCDHA3-201ENST00000522353 LINC00467Q9BRT7 94 aa12.1□□□□□ -0.47
PCDHA3-201ENST00000522353 YPEL4Q96NS1 127 aa12.1□□□□□ -0.47
PCDHA3-201ENST00000522353 IGLV1-40P01703 118 aa12.09□□□□□ -0.47
PCDHA3-201ENST00000522353 CHKB-CPT1BH3BT56 60 aa12.09□□□□□ -0.47
PCDHA3-201ENST00000522353 TAX1BP3O14907 124 aa12.09□□□□□ -0.47
PCDHA3-201ENST00000522353 CLEC2BQ92478 149 aa12.09□□□□□ -0.47
PCDHA3-201ENST00000522353 WFDC2Q14508 124 aa12.09□□□□□ -0.47
PCDHA3-201ENST00000522353 ZNF295-AS1Q8N0V1 137 aa12.09□□□□□ -0.47
PCDHA3-201ENST00000522353 SYCNQ0VAF6 134 aa12.08□□□□□ -0.48
PCDHA3-201ENST00000522353 CDSNQ15517 529 aa12.08□□□□□ -0.48
PCDHA3-201ENST00000522353 ABCA12Q86UK0 2595 aa12.07□□□□□ -0.48
PCDHA3-201ENST00000522353 LRCOL1A6NCL2 159 aa12.07□□□□□ -0.48
PCDHA3-201ENST00000522353 KPRPQ5T749 579 aaPredicted RBP12.07□□□□□ -0.48
PCDHA3-201ENST00000522353 SMIM20Q8N5G0 67 aa12.07□□□□□ -0.48
PCDHA3-201ENST00000522353 BBC3Q96PG8 261 aaPredicted RBP12.07□□□□□ -0.48
PCDHA3-201ENST00000522353 A0A0J9YXY3 114 aa12.07□□□□□ -0.48
PCDHA3-201ENST00000522353 FAM19A1Q7Z5A9 133 aa12.07□□□□□ -0.48
PCDHA3-201ENST00000522353 GDF5OSQ5U4N7 250 aa12.06□□□□□ -0.48
PCDHA3-201ENST00000522353 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.06□□□□□ -0.48
PCDHA3-201ENST00000522353 FOXI1Q12951 378 aa12.06□□□□□ -0.48
PCDHA3-201ENST00000522353 HIST2H2BDQ6DRA6 164 aa12.06□□□□□ -0.48
PCDHA3-201ENST00000522353 RNASE8Q8TDE3 154 aaKnown RBP12.06□□□□□ -0.48
PCDHA3-201ENST00000522353 H0Y9J4 135 aa12.06□□□□□ -0.48
PCDHA3-201ENST00000522353 CDKN2A-AS1Q9UH64 79 aa12.06□□□□□ -0.48
PCDHA3-201ENST00000522353 M0QY20 66 aa12.05□□□□□ -0.48
PCDHA3-201ENST00000522353 PLXNB1O43157 2135 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms