RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 COX6B1P14854 86 aa10.19□□□□□ -0.78
USP42-206ENST00000479544 CLPSL2Q6UWE3 100 aa10.19□□□□□ -0.78
USP42-206ENST00000479544 ZFAND2AQ8N6M9 145 aa10.19□□□□□ -0.78
USP42-206ENST00000479544 C20orf203Q8NBC4 194 aa10.19□□□□□ -0.78
USP42-206ENST00000479544 PIFOQ8TCI5 191 aa10.19□□□□□ -0.78
USP42-206ENST00000479544 INAFM2P0DMQ5 153 aa10.19□□□□□ -0.78
USP42-206ENST00000479544 Q6ZSV7 163 aa10.19□□□□□ -0.78
USP42-206ENST00000479544 TMEM86BQ8N661 226 aa10.19□□□□□ -0.78
USP42-206ENST00000479544 IGHG4P01861 327 aa10.19□□□□□ -0.78
USP42-206ENST00000479544 RHOHQ15669 191 aa10.19□□□□□ -0.78
USP42-206ENST00000479544 APRG1Q8IVJ8 170 aa10.19□□□□□ -0.78
USP42-206ENST00000479544 ZFAND3Q9H8U3 227 aa10.19□□□□□ -0.78
USP42-206ENST00000479544 REV3LO60673 3130 aa10.18□□□□□ -0.78
USP42-206ENST00000479544 PROK1P58294 105 aa10.18□□□□□ -0.78
USP42-206ENST00000479544 CFAP161Q6P656 301 aa10.18□□□□□ -0.78
USP42-206ENST00000479544 S100A7L2Q5SY68 101 aa10.18□□□□□ -0.78
USP42-206ENST00000479544 IGHV3-30P01768 117 aa10.17□□□□□ -0.78
USP42-206ENST00000479544 IGHV3-30-5P0DP03 117 aa10.17□□□□□ -0.78
USP42-206ENST00000479544 A0A096LPF7 62 aa10.17□□□□□ -0.78
USP42-206ENST00000479544 MALP21145 153 aa10.17□□□□□ -0.78
USP42-206ENST00000479544 HAMPP81172 84 aa10.17□□□□□ -0.78
USP42-206ENST00000479544 C5orf38Q86SI9 138 aa10.17□□□□□ -0.78
USP42-206ENST00000479544 C5orf56Q8N8D9 126 aa10.17□□□□□ -0.78
USP42-206ENST00000479544 ZNF580Q9UK33 172 aa10.17□□□□□ -0.78
USP42-206ENST00000479544 ZNF22P17026 224 aaPredicted RBP10.17□□□□□ -0.78
USP42-206ENST00000479544 MUC3AQ02505 3323 aa10.16□□□□□ -0.78
USP42-206ENST00000479544 IGHV4-59P01825 116 aa10.16□□□□□ -0.78
USP42-206ENST00000479544 PEMTQ9UBM1 199 aa10.16□□□□□ -0.78
USP42-206ENST00000479544 SOCS3O14543 225 aa10.16□□□□□ -0.78
USP42-206ENST00000479544 A0A1B0GX51 115 aa10.16□□□□□ -0.78
USP42-206ENST00000479544 U3KQE9 123 aa10.16□□□□□ -0.78
USP42-206ENST00000479544 TMEM126AQ9H061 195 aa10.16□□□□□ -0.78
USP42-206ENST00000479544 INSP01308 110 aa10.15□□□□□ -0.78
USP42-206ENST00000479544 TSPEAR-AS2P59090 65 aa10.15□□□□□ -0.78
USP42-206ENST00000479544 LY6LH3BQJ8 138 aa10.15□□□□□ -0.78
USP42-206ENST00000479544 TRACP01848 142 aa10.15□□□□□ -0.78
USP42-206ENST00000479544 CDKN2A-AS1Q9UH64 79 aa10.15□□□□□ -0.79
USP42-206ENST00000479544 IGHV4-61A0A0C4DH41 118 aa10.14□□□□□ -0.79
USP42-206ENST00000479544 ATP5G1P05496 136 aa10.14□□□□□ -0.79
USP42-206ENST00000479544 MRGPRG-AS1Q2M3A8 158 aa10.14□□□□□ -0.79
USP42-206ENST00000479544 HIST2H2BDQ6DRA6 164 aa10.14□□□□□ -0.79
USP42-206ENST00000479544 CRLF1O75462 422 aa10.14□□□□□ -0.79
USP42-206ENST00000479544 RNASE3P12724 160 aaKnown RBP10.14□□□□□ -0.79
USP42-206ENST00000479544 ZMAT4Q9H898 229 aa10.14□□□□□ -0.79
USP42-206ENST00000479544 B4DSR2 109 aa10.14□□□□□ -0.79
USP42-206ENST00000479544 CDIP1Q9H305 208 aa10.13□□□□□ -0.79
USP42-206ENST00000479544 KMT2BQ9UMN6 2715 aaPredicted RBP10.13□□□□□ -0.79
USP42-206ENST00000479544 MSMBP08118 114 aa10.13□□□□□ -0.79
USP42-206ENST00000479544 SRSF2Q01130 221 aaKnown RBP10.13□□□□□ -0.79
USP42-206ENST00000479544 KALRNO60229 2985 aa10.13□□□□□ -0.79
USP42-206ENST00000479544 IGHV1-58A0A0C4DH39 117 aa10.13□□□□□ -0.79
USP42-206ENST00000479544 CLPSL1A2RUU4 121 aa10.13□□□□□ -0.79
USP42-206ENST00000479544 F8W735 103 aaPredicted RBP10.12□□□□□ -0.79
USP42-206ENST00000479544 H3BT86 120 aa10.12□□□□□ -0.79
USP42-206ENST00000479544 UBE2D1P51668 147 aa10.12□□□□□ -0.79
USP42-206ENST00000479544 CNFNQ9BYD5 112 aa10.12□□□□□ -0.79
USP42-206ENST00000479544 HELZ2Q9BYK8 2649 aaKnown RBP10.12□□□□□ -0.79
USP42-206ENST00000479544 IGLV4-3A0A075B6K6 122 aa10.12□□□□□ -0.79
USP42-206ENST00000479544 RPL32P62910 135 aaKnown RBP10.12□□□□□ -0.79
USP42-206ENST00000479544 ADORA2A-AS1P86434 159 aa10.12□□□□□ -0.79
USP42-206ENST00000479544 HERVK_113P63121 156 aa10.11□□□□□ -0.79
USP42-206ENST00000479544 SMCPP49901 116 aaPredicted RBP10.11□□□□□ -0.79
USP42-206ENST00000479544 SLURP1P55000 103 aa10.11□□□□□ -0.79
USP42-206ENST00000479544 C14orf132Q9NPU4 83 aa10.11□□□□□ -0.79
USP42-206ENST00000479544 SDIM1Q6ZPB5 146 aa10.11□□□□□ -0.79
USP42-206ENST00000479544 SND1-IT1Q9HBX3 110 aa10.11□□□□□ -0.79
USP42-206ENST00000479544 DAZ2Q13117 558 aaKnown RBP10.1□□□□□ -0.79
USP42-206ENST00000479544 C10orf99Q6UWK7 81 aa10.1□□□□□ -0.79
USP42-206ENST00000479544 DAZ4Q86SG3 579 aaKnown RBP10.1□□□□□ -0.79
USP42-206ENST00000479544 DAZ3Q9NR90 486 aaKnown RBP10.1□□□□□ -0.79
USP42-206ENST00000479544 TMEM223A0PJW6 202 aa10.1□□□□□ -0.79
USP42-206ENST00000479544 ODF3BA8MYP8 253 aa10.1□□□□□ -0.79
USP42-206ENST00000479544 LECT2O14960 151 aa10.1□□□□□ -0.79
USP42-206ENST00000479544 PIK3CD-AS1Q5SR53 167 aa10.1□□□□□ -0.79
USP42-206ENST00000479544 NRGNQ92686 78 aa10.1□□□□□ -0.79
USP42-206ENST00000479544 ADGRG4Q8IZF6 3080 aa10.1□□□□□ -0.79
USP42-206ENST00000479544 EDN2P20800 178 aa10.1□□□□□ -0.79
USP42-206ENST00000479544 XCL1P47992 114 aa10.1□□□□□ -0.79
USP42-206ENST00000479544 SIRPDQ9H106 197 aa10.1□□□□□ -0.79
USP42-206ENST00000479544 F8P00451 2351 aa10.1□□□□□ -0.79
USP42-206ENST00000479544 IGLV2-18A0A075B6J9 118 aa10.1□□□□□ -0.79
USP42-206ENST00000479544 A0A0B4J2C4 111 aa10.1□□□□□ -0.79
USP42-206ENST00000479544 TMEM243Q9BU79 118 aa10.1□□□□□ -0.79
USP42-206ENST00000479544 NOP10Q9NPE3 64 aaKnown RBP10.1□□□□□ -0.79
USP42-206ENST00000479544 DEFB112Q30KQ8 113 aa10.09□□□□□ -0.79
USP42-206ENST00000479544 VSIG2Q96IQ7 327 aa10.09□□□□□ -0.79
USP42-206ENST00000479544 MIAQ16674 131 aa10.09□□□□□ -0.79
USP42-206ENST00000479544 M0QY20 66 aa10.08□□□□□ -0.8
USP42-206ENST00000479544 SPANXA1Q9NS26 97 aa10.08□□□□□ -0.8
USP42-206ENST00000479544 MUC4Q99102 2169 aa10.08□□□□□ -0.8
USP42-206ENST00000479544 RNF223E7ERA6 249 aa10.08□□□□□ -0.8
USP42-206ENST00000479544 MIR7-3HGQ8N6C7 128 aa10.08□□□□□ -0.8
USP42-206ENST00000479544 HECTD1Q9ULT8 2610 aa10.08□□□□□ -0.8
USP42-206ENST00000479544 POLR2KP53803 58 aaKnown RBP10.07□□□□□ -0.8
USP42-206ENST00000479544 NSUN5P1Q3KNT7 163 aa10.07□□□□□ -0.8
USP42-206ENST00000479544 TRAV13-2A0A0B4J235 113 aa10.07□□□□□ -0.8
USP42-206ENST00000479544 LINC00467Q9BRT7 94 aa10.07□□□□□ -0.8
USP42-206ENST00000479544 TACC2O95359 2948 aa10.07□□□□□ -0.8
USP42-206ENST00000479544 A0A0J9YX75 114 aa10.07□□□□□ -0.8
USP42-206ENST00000479544 UBE2D3P61077 147 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms