RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 KRTAP4-1Q9BYQ7 146 aa2.38□□□□□ -2.03
VPS50-214ENST00000477935 NAA50Q9GZZ1 169 aaKnown RBP2.38□□□□□ -2.03
VPS50-214ENST00000477935 RPP21Q9H633 154 aaKnown RBP2.38□□□□□ -2.03
VPS50-214ENST00000477935 NDUFB11Q9NX14 153 aa2.38□□□□□ -2.03
VPS50-214ENST00000477935 TMEM14CQ9P0S9 112 aa2.38□□□□□ -2.03
VPS50-214ENST00000477935 SHPKQ9UHJ6 478 aa2.38□□□□□ -2.03
VPS50-214ENST00000477935 NAGKQ9UJ70 344 aa2.38□□□□□ -2.03
VPS50-214ENST00000477935 C14orf166Q9Y224 244 aaKnown RBP2.38□□□□□ -2.03
VPS50-214ENST00000477935 TPRKBQ9Y3C4 175 aa2.38□□□□□ -2.03
VPS50-214ENST00000477935 IGKV2-40A0A087WW87 121 aaPredicted RBP2.37□□□□□ -2.03
VPS50-214ENST00000477935 SMIM31A0A1B0GVY4 71 aa2.37□□□□□ -2.03
VPS50-214ENST00000477935 ATP5HO75947 161 aa2.37□□□□□ -2.03
VPS50-214ENST00000477935 IGKV2D-40P01614 121 aaPredicted RBP2.37□□□□□ -2.03
VPS50-214ENST00000477935 UBE2AP49459 152 aa2.37□□□□□ -2.03
VPS50-214ENST00000477935 UBE2D3P61077 147 aa2.37□□□□□ -2.03
VPS50-214ENST00000477935 UBE2D2P62837 147 aa2.37□□□□□ -2.03
VPS50-214ENST00000477935 RBX1P62877 108 aa2.37□□□□□ -2.03
VPS50-214ENST00000477935 MXD1Q05195 221 aa2.37□□□□□ -2.03
VPS50-214ENST00000477935 RNASE10Q5GAN6 216 aaKnown RBP2.37□□□□□ -2.03
VPS50-214ENST00000477935 C6orf226Q5I0X4 101 aa2.37□□□□□ -2.03
VPS50-214ENST00000477935 PACRGLQ8N7B6 248 aa2.37□□□□□ -2.03
VPS50-214ENST00000477935 C15orf56Q8N910 161 aa2.37□□□□□ -2.03
VPS50-214ENST00000477935 DYNC2LI1Q8TCX1 351 aa2.37□□□□□ -2.03
VPS50-214ENST00000477935 PFDN5Q99471 154 aa2.37□□□□□ -2.03
VPS50-214ENST00000477935 RETNLBQ9BQ08 111 aa2.37□□□□□ -2.03
VPS50-214ENST00000477935 GVQW2A0A096LPI5 108 aaPredicted RBP2.36□□□□□ -2.03
VPS50-214ENST00000477935 A0A1W2PNN7 141 aa2.36□□□□□ -2.03
VPS50-214ENST00000477935 SYNGR2O43760 224 aa2.36□□□□□ -2.03
VPS50-214ENST00000477935 PTTG1O95997 202 aa2.36□□□□□ -2.03
VPS50-214ENST00000477935 IAPPP10997 89 aa2.36□□□□□ -2.03
VPS50-214ENST00000477935 SLC25A6P12236 298 aa2.36□□□□□ -2.03
VPS50-214ENST00000477935 S100A10P60903 97 aa2.36□□□□□ -2.03
VPS50-214ENST00000477935 GNGT1P63211 74 aa2.36□□□□□ -2.03
VPS50-214ENST00000477935 KRTAP19-2Q3LHN2 52 aa2.36□□□□□ -2.03
VPS50-214ENST00000477935 KRTAP20-1Q3LI63 56 aa2.36□□□□□ -2.03
VPS50-214ENST00000477935 LGALSLQ3ZCW2 172 aaPredicted RBP2.36□□□□□ -2.03
VPS50-214ENST00000477935 COA6Q5JTJ3 125 aaKnown RBP2.36□□□□□ -2.03
VPS50-214ENST00000477935 UBE2NLQ5JXB2 153 aa2.36□□□□□ -2.03
VPS50-214ENST00000477935 SPANXN5Q5MJ07 72 aa2.36□□□□□ -2.03
VPS50-214ENST00000477935 FP248Q71RG6 208 aaPredicted RBP2.36□□□□□ -2.03
VPS50-214ENST00000477935 LYZL2Q7Z4W2 148 aa2.36□□□□□ -2.03
VPS50-214ENST00000477935 EXOC3-AS1Q8N2X6 119 aa2.36□□□□□ -2.03
VPS50-214ENST00000477935 GGACTQ9BVM4 153 aa2.36□□□□□ -2.03
VPS50-214ENST00000477935 TXNL4BQ9NX01 149 aaKnown RBP2.36□□□□□ -2.03
VPS50-214ENST00000477935 COMMD3Q9UBI1 195 aa2.36□□□□□ -2.03
VPS50-214ENST00000477935 RABL2AQ9UBK7 228 aaPredicted RBP2.36□□□□□ -2.03
VPS50-214ENST00000477935 RABL2BQ9UNT1 228 aa2.36□□□□□ -2.03
VPS50-214ENST00000477935 MUC12Q9UKN1 5478 aa2.35□□□□□ -2.03
VPS50-214ENST00000477935 A0A1B0GVX0 72 aa2.35□□□□□ -2.03
VPS50-214ENST00000477935 DUXBA0A1W2PPF3 345 aa2.35□□□□□ -2.03
VPS50-214ENST00000477935 FAM24AA6NFZ4 105 aa2.35□□□□□ -2.03
VPS50-214ENST00000477935 GNAO1P09471 354 aa2.35□□□□□ -2.03
VPS50-214ENST00000477935 FGF6P10767 208 aa2.35□□□□□ -2.03
VPS50-214ENST00000477935 SDC2P34741 201 aa2.35□□□□□ -2.03
VPS50-214ENST00000477935 SLC38A11Q08AI6 406 aa2.35□□□□□ -2.03
VPS50-214ENST00000477935 C9orf116Q5BN46 136 aaPredicted RBP2.35□□□□□ -2.03
VPS50-214ENST00000477935 EIF5AL1Q6IS14 154 aaKnown RBP2.35□□□□□ -2.03
VPS50-214ENST00000477935 CLPSL2Q6UWE3 100 aa2.35□□□□□ -2.03
VPS50-214ENST00000477935 MITD1Q8WV92 249 aa2.35□□□□□ -2.03
VPS50-214ENST00000477935 SCGB3A2Q96PL1 93 aa2.35□□□□□ -2.03
VPS50-214ENST00000477935 PSG8Q9UQ74 426 aa2.35□□□□□ -2.03
VPS50-214ENST00000477935 TRBV25-1A0A075B6N4 114 aa2.34□□□□□ -2.03
VPS50-214ENST00000477935 LOC107984640A0A0U1RRK4 108 aa2.34□□□□□ -2.03
VPS50-214ENST00000477935 PCP4L1A6NKN8 68 aa2.34□□□□□ -2.03
VPS50-214ENST00000477935 COLCA2A8K830 154 aa2.34□□□□□ -2.03
VPS50-214ENST00000477935 CD3DP04234 171 aa2.34□□□□□ -2.03
VPS50-214ENST00000477935 NBEAP1P0C6P0 100 aa2.34□□□□□ -2.03
VPS50-214ENST00000477935 RAB5CP51148 216 aa2.34□□□□□ -2.03
VPS50-214ENST00000477935 SCGB2B2Q4G0G5 96 aa2.34□□□□□ -2.03
VPS50-214ENST00000477935 IZUMO2Q6UXV1 221 aa2.34□□□□□ -2.03
VPS50-214ENST00000477935 LINC00304Q8N9R0 145 aa2.34□□□□□ -2.03
VPS50-214ENST00000477935 ISOC2Q96AB3 205 aa2.34□□□□□ -2.03
VPS50-214ENST00000477935 CARD19Q96LW7 228 aa2.34□□□□□ -2.03
VPS50-214ENST00000477935 NDFIP1Q9BT67 221 aa2.34□□□□□ -2.03
VPS50-214ENST00000477935 WFDC1Q9HC57 220 aa2.34□□□□□ -2.03
VPS50-214ENST00000477935 LYRM2Q9NU23 88 aaPredicted RBP2.34□□□□□ -2.03
VPS50-214ENST00000477935 CCDC59Q9P031 241 aaKnown RBP2.34□□□□□ -2.03
VPS50-214ENST00000477935 PHLDA3Q9Y5J5 127 aa2.34□□□□□ -2.03
VPS50-214ENST00000477935 PPP1R2P9O14990 202 aa2.33□□□□□ -2.04
VPS50-214ENST00000477935 RNASE3P12724 160 aaKnown RBP2.33□□□□□ -2.04
VPS50-214ENST00000477935 S100A4P26447 101 aaKnown RBP2.33□□□□□ -2.04
VPS50-214ENST00000477935 PHF5AQ7RTV0 110 aaKnown RBP2.33□□□□□ -2.04
VPS50-214ENST00000477935 TMEM229BQ8NBD8 167 aa2.33□□□□□ -2.04
VPS50-214ENST00000477935 TVP23CQ96ET8 276 aa2.33□□□□□ -2.04
VPS50-214ENST00000477935 DIRAS2Q96HU8 199 aa2.33□□□□□ -2.04
VPS50-214ENST00000477935 SLIRPQ9GZT3 109 aaKnown RBP2.33□□□□□ -2.04
VPS50-214ENST00000477935 TREM1Q9NP99 234 aa2.33□□□□□ -2.04
VPS50-214ENST00000477935 OR5AC2Q9NZP5 309 aa2.33□□□□□ -2.04
VPS50-214ENST00000477935 FLGP20930 4061 aaPredicted RBP2.33□□□□□ -2.04
VPS50-214ENST00000477935 HMCN1Q96RW7 5635 aa2.32□□□□□ -2.04
VPS50-214ENST00000477935 DISC1C4P0D8 188 aa2.32□□□□□ -2.04
VPS50-214ENST00000477935 H3BP45 60 aa2.32□□□□□ -2.04
VPS50-214ENST00000477935 RAB3DO95716 219 aa2.32□□□□□ -2.04
VPS50-214ENST00000477935 APOA1P02647 267 aa2.32□□□□□ -2.04
VPS50-214ENST00000477935 SULT1A2P50226 295 aa2.32□□□□□ -2.04
VPS50-214ENST00000477935 RRAS2P62070 204 aaPredicted RBP2.32□□□□□ -2.04
VPS50-214ENST00000477935 SYCNQ0VAF6 134 aa2.32□□□□□ -2.04
VPS50-214ENST00000477935 SS18Q15532 418 aa2.32□□□□□ -2.04
VPS50-214ENST00000477935 IQCJQ1A5X6 159 aa2.32□□□□□ -2.04
VPS50-214ENST00000477935 SLC25A34Q6PIV7 304 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms