RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TRBV6-8A0A0A6YYG3 113 aa8.02□□□□□ -1.13
SQSTM1-206ENST00000466342 C7orf77A4D0Y5 90 aa8.02□□□□□ -1.13
SQSTM1-206ENST00000466342 NDUFA5Q16718 116 aa8.02□□□□□ -1.13
SQSTM1-206ENST00000466342 LINC01556Q5JQF7 62 aa8.02□□□□□ -1.13
SQSTM1-206ENST00000466342 FAM104BQ5XKR9 115 aa8.02□□□□□ -1.13
SQSTM1-206ENST00000466342 KCNIP4Q6PIL6 250 aa8.02□□□□□ -1.13
SQSTM1-206ENST00000466342 Q6ZRN7 208 aaPredicted RBP8.02□□□□□ -1.13
SQSTM1-206ENST00000466342 NFE4Q86UQ8 179 aa8.02□□□□□ -1.13
SQSTM1-206ENST00000466342 RPL39LQ96EH5 51 aaKnown RBP8.02□□□□□ -1.13
SQSTM1-206ENST00000466342 BTF3L4Q96K17 158 aa8.02□□□□□ -1.13
SQSTM1-206ENST00000466342 TMEM242Q9NWH2 141 aa8.02□□□□□ -1.13
SQSTM1-206ENST00000466342 TRBV6-5A0A0K0K1A5 114 aa8.01□□□□□ -1.13
SQSTM1-206ENST00000466342 EREGO14944 169 aa8.01□□□□□ -1.13
SQSTM1-206ENST00000466342 GAS8-AS1O95177 125 aa8.01□□□□□ -1.13
SQSTM1-206ENST00000466342 APOC3P02656 99 aa8.01□□□□□ -1.13
SQSTM1-206ENST00000466342 KRTAP10-1P60331 282 aa8.01□□□□□ -1.13
SQSTM1-206ENST00000466342 MRPL51Q4U2R6 128 aaKnown RBP8.01□□□□□ -1.13
SQSTM1-206ENST00000466342 NTM-AS1Q6ZSK4 140 aa8.01□□□□□ -1.13
SQSTM1-206ENST00000466342 SVBPQ8N300 66 aa8.01□□□□□ -1.13
SQSTM1-206ENST00000466342 TRAV9-1A0A075B6T8 112 aa8□□□□□ -1.13
SQSTM1-206ENST00000466342 RPS10P46783 165 aaKnown RBP8□□□□□ -1.13
SQSTM1-206ENST00000466342 C10orf126Q8N4M7 172 aa8□□□□□ -1.13
SQSTM1-206ENST00000466342 RPS10P5Q9NQ39 176 aa8□□□□□ -1.13
SQSTM1-206ENST00000466342 TRBV25-1A0A075B6N4 114 aa7.99□□□□□ -1.13
SQSTM1-206ENST00000466342 SDHAF1A6NFY7 115 aa7.99□□□□□ -1.13
SQSTM1-206ENST00000466342 SMKR1H3BMG3 65 aa7.99□□□□□ -1.13
SQSTM1-206ENST00000466342 SNAPINO95295 136 aa7.99□□□□□ -1.13
SQSTM1-206ENST00000466342 NCR2O95944 276 aa7.99□□□□□ -1.13
SQSTM1-206ENST00000466342 PPP1R17O96001 155 aa7.99□□□□□ -1.13
SQSTM1-206ENST00000466342 IGHV3-30P01768 117 aa7.99□□□□□ -1.13
SQSTM1-206ENST00000466342 IGHV3-33P01772 117 aa7.99□□□□□ -1.13
SQSTM1-206ENST00000466342 IGHV3-30-3P0DP02 117 aa7.99□□□□□ -1.13
SQSTM1-206ENST00000466342 IGHV3-30-5P0DP03 117 aa7.99□□□□□ -1.13
SQSTM1-206ENST00000466342 S100PP25815 95 aa7.99□□□□□ -1.13
SQSTM1-206ENST00000466342 IQCJQ1A5X6 159 aa7.99□□□□□ -1.13
SQSTM1-206ENST00000466342 NIT1Q86X76 327 aa7.99□□□□□ -1.13
SQSTM1-206ENST00000466342 SLC7A5P1Q8MH63 180 aa7.99□□□□□ -1.13
SQSTM1-206ENST00000466342 IGHV1-24A0A0C4DH33 117 aa7.98□□□□□ -1.13
SQSTM1-206ENST00000466342 COTL1Q14019 142 aa7.98□□□□□ -1.13
SQSTM1-206ENST00000466342 Q8N3U1 123 aa7.98□□□□□ -1.13
SQSTM1-206ENST00000466342 NRACQ8N912 160 aa7.98□□□□□ -1.13
SQSTM1-206ENST00000466342 CHCHD7Q9BUK0 85 aa7.98□□□□□ -1.13
SQSTM1-206ENST00000466342 ST20Q9HBF5 79 aa7.98□□□□□ -1.13
SQSTM1-206ENST00000466342 URGCP-MRPS24S4R325 110 aa7.98□□□□□ -1.13
SQSTM1-206ENST00000466342 PPBPP02775 128 aa7.97□□□□□ -1.13
SQSTM1-206ENST00000466342 CKS2P33552 79 aa7.97□□□□□ -1.13
SQSTM1-206ENST00000466342 PKIAP61925 76 aa7.97□□□□□ -1.13
SQSTM1-206ENST00000466342 CHCHD5Q9BSY4 110 aa7.97□□□□□ -1.13
SQSTM1-206ENST00000466342 TMEM70Q9BUB7 260 aa7.97□□□□□ -1.13
SQSTM1-206ENST00000466342 A0A087WX48 190 aa7.96□□□□□ -1.14
SQSTM1-206ENST00000466342 IBA57-AS1B1ANH7 110 aa7.96□□□□□ -1.14
SQSTM1-206ENST00000466342 D6R8Y8 96 aa7.96□□□□□ -1.14
SQSTM1-206ENST00000466342 I3L3M4 83 aa7.96□□□□□ -1.14
SQSTM1-206ENST00000466342 AMTP48728 403 aa7.96□□□□□ -1.14
SQSTM1-206ENST00000466342 POLR2KP53803 58 aaKnown RBP7.96□□□□□ -1.14
SQSTM1-206ENST00000466342 SUMO2P61956 95 aaKnown RBP7.96□□□□□ -1.14
SQSTM1-206ENST00000466342 DEFB104AQ8WTQ1 72 aa7.96□□□□□ -1.14
SQSTM1-206ENST00000466342 TMEM243Q9BU79 118 aa7.96□□□□□ -1.14
SQSTM1-206ENST00000466342 LRP1Q07954 4544 aaKnown RBP7.96□□□□□ -1.14
SQSTM1-206ENST00000466342 RNF213Q63HN8 5207 aa7.96□□□□□ -1.14
SQSTM1-206ENST00000466342 TRBV24-1A0A075B6N3 115 aa7.95□□□□□ -1.14
SQSTM1-206ENST00000466342 TRBV27A0A0K0K1C4 114 aa7.95□□□□□ -1.14
SQSTM1-206ENST00000466342 TMEM262E9PQX1 116 aa7.95□□□□□ -1.14
SQSTM1-206ENST00000466342 PHOX2AO14813 284 aa7.95□□□□□ -1.14
SQSTM1-206ENST00000466342 PMCHP20382 165 aa7.95□□□□□ -1.14
SQSTM1-206ENST00000466342 LAGE3Q14657 143 aa7.95□□□□□ -1.14
SQSTM1-206ENST00000466342 MPV17L2Q567V2 206 aa7.95□□□□□ -1.14
SQSTM1-206ENST00000466342 TMEM136Q6ZRR5 245 aa7.95□□□□□ -1.14
SQSTM1-206ENST00000466342 ORMDL3Q8N138 153 aa7.95□□□□□ -1.14
SQSTM1-206ENST00000466342 A0A087WTM6 91 aa7.94□□□□□ -1.14
SQSTM1-206ENST00000466342 VCYO14598 125 aa7.94□□□□□ -1.14
SQSTM1-206ENST00000466342 TNFRSF6BO95407 300 aa7.94□□□□□ -1.14
SQSTM1-206ENST00000466342 NPYP01303 97 aa7.94□□□□□ -1.14
SQSTM1-206ENST00000466342 APCSP02743 223 aa7.94□□□□□ -1.14
SQSTM1-206ENST00000466342 GCSHP23434 173 aa7.94□□□□□ -1.14
SQSTM1-206ENST00000466342 HAMPP81172 84 aa7.94□□□□□ -1.14
SQSTM1-206ENST00000466342 GAGE6Q13070 117 aa7.94□□□□□ -1.14
SQSTM1-206ENST00000466342 ELOBQ15370 118 aa7.94□□□□□ -1.14
SQSTM1-206ENST00000466342 ATRAIDQ6UW56 229 aa7.94□□□□□ -1.14
SQSTM1-206ENST00000466342 C20orf78Q9BR46 151 aa7.94□□□□□ -1.14
SQSTM1-206ENST00000466342 TSHBP01222 138 aa7.93□□□□□ -1.14
SQSTM1-206ENST00000466342 HLA-DQA1P01909 254 aa7.93□□□□□ -1.14
SQSTM1-206ENST00000466342 PLA2G1BP04054 148 aaKnown RBP7.93□□□□□ -1.14
SQSTM1-206ENST00000466342 RPL32P62910 135 aaKnown RBP7.93□□□□□ -1.14
SQSTM1-206ENST00000466342 COX19Q49B96 90 aa7.93□□□□□ -1.14
SQSTM1-206ENST00000466342 PRELID3AQ96N28 172 aa7.93□□□□□ -1.14
SQSTM1-206ENST00000466342 KLK12Q9UKR0 248 aa7.93□□□□□ -1.14
SQSTM1-206ENST00000466342 LAMTOR2Q9Y2Q5 125 aa7.93□□□□□ -1.14
SQSTM1-206ENST00000466342 UBE2L6O14933 153 aa7.92□□□□□ -1.14
SQSTM1-206ENST00000466342 RBX1P62877 108 aa7.92□□□□□ -1.14
SQSTM1-206ENST00000466342 Q8N976 141 aa7.92□□□□□ -1.14
SQSTM1-206ENST00000466342 KIR2DL4Q99706 377 aa7.92□□□□□ -1.14
SQSTM1-206ENST00000466342 SMIM2Q9BVW6 85 aa7.92□□□□□ -1.14
SQSTM1-206ENST00000466342 GNB1LQ9BYB4 327 aa7.92□□□□□ -1.14
SQSTM1-206ENST00000466342 Q9HAA7 133 aa7.92□□□□□ -1.14
SQSTM1-206ENST00000466342 FAT3Q8TDW7 4589 aa7.91□□□□□ -1.14
SQSTM1-206ENST00000466342 TRAV8-3A0A0A6YYJ7 113 aa7.91□□□□□ -1.14
SQSTM1-206ENST00000466342 A0A1B0GUV1 79 aa7.91□□□□□ -1.14
SQSTM1-206ENST00000466342 H7C423 109 aa7.91□□□□□ -1.14
SQSTM1-206ENST00000466342 MT-ND6P03923 174 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms