RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 TMEM243Q9BU79 118 aa13.07□□□□□ -0.32
COL6A1-203ENST00000466285 NDUFS6O75380 124 aaKnown RBP13.06□□□□□ -0.32
COL6A1-203ENST00000466285 TAGLN2P37802 199 aaKnown RBP13.06□□□□□ -0.32
COL6A1-203ENST00000466285 ODF1Q14990 250 aa13.06□□□□□ -0.32
COL6A1-203ENST00000466285 RASL11AQ6T310 242 aa13.06□□□□□ -0.32
COL6A1-203ENST00000466285 LYZL1Q6UWQ5 148 aa13.06□□□□□ -0.32
COL6A1-203ENST00000466285 A0A087WYN8 130 aa13.05□□□□□ -0.32
COL6A1-203ENST00000466285 MEF2BQ02080 365 aaPredicted RBP13.05□□□□□ -0.32
COL6A1-203ENST00000466285 SPACA4Q8TDM5 124 aa13.05□□□□□ -0.32
COL6A1-203ENST00000466285 LRP2P98164 4655 aa13.04□□□□□ -0.32
COL6A1-203ENST00000466285 TRAV26-2A0A0B4J265 109 aa13.04□□□□□ -0.32
COL6A1-203ENST00000466285 IFNA1P01562 189 aa13.04□□□□□ -0.32
COL6A1-203ENST00000466285 CLRN3Q8NCR9 226 aa13.04□□□□□ -0.32
COL6A1-203ENST00000466285 CACNG7P62955 275 aa13.03□□□□□ -0.32
COL6A1-203ENST00000466285 FAM210AQ96ND0 272 aa13.03□□□□□ -0.32
COL6A1-203ENST00000466285 IGKV3OR2-268A0A0C4DH90 116 aa13.02□□□□□ -0.33
COL6A1-203ENST00000466285 A0A1B0GUV1 79 aa13.02□□□□□ -0.33
COL6A1-203ENST00000466285 H7C1H1 209 aa13.02□□□□□ -0.33
COL6A1-203ENST00000466285 CTRLP40313 264 aa13.02□□□□□ -0.33
COL6A1-203ENST00000466285 GNG4P50150 75 aa13.02□□□□□ -0.33
COL6A1-203ENST00000466285 CLLU1Q5K131 121 aa13.02□□□□□ -0.33
COL6A1-203ENST00000466285 PGLYRP4Q96LB8 373 aa13.02□□□□□ -0.33
COL6A1-203ENST00000466285 IGHV3-64A0A075B6Q5 118 aa13.01□□□□□ -0.33
COL6A1-203ENST00000466285 TRAV8-4A0A0B4J246 113 aa13.01□□□□□ -0.33
COL6A1-203ENST00000466285 GAGE12HA6NDE8 117 aa13.01□□□□□ -0.33
COL6A1-203ENST00000466285 P01737 135 aa13.01□□□□□ -0.33
COL6A1-203ENST00000466285 NTF3P20783 257 aa13.01□□□□□ -0.33
COL6A1-203ENST00000466285 RPS20P60866 119 aaKnown RBP13.01□□□□□ -0.33
COL6A1-203ENST00000466285 HIGD2BQ4VC39 106 aa13.01□□□□□ -0.33
COL6A1-203ENST00000466285 DPH3P1Q9H4G8 78 aa13.01□□□□□ -0.33
COL6A1-203ENST00000466285 NIT2Q9NQR4 276 aa13.01□□□□□ -0.33
COL6A1-203ENST00000466285 PHOX2AO14813 284 aa13□□□□□ -0.33
COL6A1-203ENST00000466285 PDE6DO43924 150 aa13□□□□□ -0.33
COL6A1-203ENST00000466285 AMTP48728 403 aa13□□□□□ -0.33
COL6A1-203ENST00000466285 FOXA3P55318 350 aaPredicted RBP13□□□□□ -0.33
COL6A1-203ENST00000466285 GATD1Q8NB37 220 aa13□□□□□ -0.33
COL6A1-203ENST00000466285 RPL39LQ96EH5 51 aaKnown RBP13□□□□□ -0.33
COL6A1-203ENST00000466285 K7EN84 100 aa12.99□□□□□ -0.33
COL6A1-203ENST00000466285 TRGC1P0CF51 173 aa12.98□□□□□ -0.33
COL6A1-203ENST00000466285 NUDT10Q8NFP7 164 aa12.98□□□□□ -0.33
COL6A1-203ENST00000466285 NUDT11Q96G61 164 aa12.98□□□□□ -0.33
COL6A1-203ENST00000466285 RNF213Q63HN8 5207 aa12.97□□□□□ -0.33
COL6A1-203ENST00000466285 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.97□□□□□ -0.33
COL6A1-203ENST00000466285 IGKV2-29A2NJV5 120 aaPredicted RBP12.97□□□□□ -0.33
COL6A1-203ENST00000466285 TMEM250H0YL14 139 aa12.97□□□□□ -0.33
COL6A1-203ENST00000466285 COX6A2Q02221 97 aa12.97□□□□□ -0.33
COL6A1-203ENST00000466285 COTL1Q14019 142 aa12.97□□□□□ -0.33
COL6A1-203ENST00000466285 Q6ZRU5 148 aa12.97□□□□□ -0.33
COL6A1-203ENST00000466285 PRSS3P2Q8NHM4 247 aa12.97□□□□□ -0.33
COL6A1-203ENST00000466285 RNASE7Q9H1E1 156 aaKnown RBP12.97□□□□□ -0.33
COL6A1-203ENST00000466285 MED9Q9NWA0 146 aa12.97□□□□□ -0.33
COL6A1-203ENST00000466285 PLAC8Q9NZF1 115 aa12.97□□□□□ -0.33
COL6A1-203ENST00000466285 F2Z2F3 143 aa12.96□□□□□ -0.33
COL6A1-203ENST00000466285 UBE2L6O14933 153 aa12.96□□□□□ -0.33
COL6A1-203ENST00000466285 GTSF1Q8WW33 167 aa12.96□□□□□ -0.33
COL6A1-203ENST00000466285 SMIM12Q96EX1 92 aa12.96□□□□□ -0.33
COL6A1-203ENST00000466285 CNFNQ9BYD5 112 aa12.96□□□□□ -0.33
COL6A1-203ENST00000466285 AP5S1Q9NUS5 200 aa12.96□□□□□ -0.33
COL6A1-203ENST00000466285 RAB14P61106 215 aa12.95□□□□□ -0.34
COL6A1-203ENST00000466285 SMDT1Q9H4I9 107 aa12.95□□□□□ -0.34
COL6A1-203ENST00000466285 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.94□□□□□ -0.34
COL6A1-203ENST00000466285 IGKV2-24A0A0C4DH68 120 aa12.94□□□□□ -0.34
COL6A1-203ENST00000466285 C9JQL5 133 aa12.94□□□□□ -0.34
COL6A1-203ENST00000466285 GAS8-AS1O95177 125 aa12.94□□□□□ -0.34
COL6A1-203ENST00000466285 SRP19P09132 144 aaKnown RBP12.94□□□□□ -0.34
COL6A1-203ENST00000466285 SRSF3P84103 164 aaKnown RBP12.94□□□□□ -0.34
COL6A1-203ENST00000466285 TWIST1Q15672 202 aa12.94□□□□□ -0.34
COL6A1-203ENST00000466285 WDR73Q6P4I2 378 aa12.94□□□□□ -0.34
COL6A1-203ENST00000466285 CHCHD10Q8WYQ3 142 aaPredicted RBP12.94□□□□□ -0.34
COL6A1-203ENST00000466285 RNF185Q96GF1 192 aa12.94□□□□□ -0.34
COL6A1-203ENST00000466285 LINC00526Q96FQ7 95 aa12.93□□□□□ -0.34
COL6A1-203ENST00000466285 DPH3Q96FX2 82 aa12.93□□□□□ -0.34
COL6A1-203ENST00000466285 RPP21Q9H633 154 aaKnown RBP12.93□□□□□ -0.34
COL6A1-203ENST00000466285 A0A096LNI7 61 aa12.92□□□□□ -0.34
COL6A1-203ENST00000466285 XKRY2A2RUG3 117 aa12.92□□□□□ -0.34
COL6A1-203ENST00000466285 EIF5A2Q9GZV4 153 aaKnown RBP12.92□□□□□ -0.34
COL6A1-203ENST00000466285 PRR3P79522 188 aaKnown RBP12.91□□□□□ -0.34
COL6A1-203ENST00000466285 FOXI1Q12951 378 aa12.91□□□□□ -0.34
COL6A1-203ENST00000466285 MAJINQ3KP22 176 aa12.91□□□□□ -0.34
COL6A1-203ENST00000466285 OCC1Q8TAD7 63 aa12.91□□□□□ -0.34
COL6A1-203ENST00000466285 GVQW2A0A096LPI5 108 aaPredicted RBP12.9□□□□□ -0.34
COL6A1-203ENST00000466285 RPS10P46783 165 aaKnown RBP12.9□□□□□ -0.34
COL6A1-203ENST00000466285 FAM231BA6NCW3 169 aa12.89□□□□□ -0.35
COL6A1-203ENST00000466285 FGF6P10767 208 aa12.89□□□□□ -0.35
COL6A1-203ENST00000466285 RNASEKQ6P5S7 137 aaKnown RBP12.89□□□□□ -0.35
COL6A1-203ENST00000466285 LINC00862A6NCI5 91 aa12.88□□□□□ -0.35
COL6A1-203ENST00000466285 PEA15Q15121 130 aa12.88□□□□□ -0.35
COL6A1-203ENST00000466285 SDHAF1A6NFY7 115 aa12.87□□□□□ -0.35
COL6A1-203ENST00000466285 APCSP02743 223 aa12.87□□□□□ -0.35
COL6A1-203ENST00000466285 AMMECR1LQ6DCA0 310 aa12.87□□□□□ -0.35
COL6A1-203ENST00000466285 STPG4Q8N801 248 aa12.87□□□□□ -0.35
COL6A1-203ENST00000466285 XCL1P47992 114 aa12.86□□□□□ -0.35
COL6A1-203ENST00000466285 C7orf33Q8WU49 177 aa12.85□□□□□ -0.35
COL6A1-203ENST00000466285 TMEM242Q9NWH2 141 aa12.85□□□□□ -0.35
COL6A1-203ENST00000466285 TSHBP01222 138 aa12.84□□□□□ -0.35
COL6A1-203ENST00000466285 BIN3Q9NQY0 253 aa12.84□□□□□ -0.35
COL6A1-203ENST00000466285 CCL25O15444 150 aa12.83□□□□□ -0.36
COL6A1-203ENST00000466285 NCR2O95944 276 aa12.83□□□□□ -0.36
COL6A1-203ENST00000466285 FAM74A3Q4VXF1 159 aa12.83□□□□□ -0.36
COL6A1-203ENST00000466285 CFAP161Q6P656 301 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms