RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 PRB2P02812 416 aaPredicted RBP5.54□□□□□ -1.52
VPS53-204ENST00000437048 IGHV3-73A0A0B4J1V6 119 aa5.54□□□□□ -1.52
VPS53-204ENST00000437048 PATE3B3GLJ2 98 aa5.54□□□□□ -1.52
VPS53-204ENST00000437048 C5orf38Q86SI9 138 aa5.54□□□□□ -1.52
VPS53-204ENST00000437048 A0A0G2JNJ9 132 aa5.53□□□□□ -1.52
VPS53-204ENST00000437048 Q9UFV3 132 aa5.53□□□□□ -1.52
VPS53-204ENST00000437048 COL4A6Q14031 1691 aa5.53□□□□□ -1.52
VPS53-204ENST00000437048 CTSGP08311 255 aa5.53□□□□□ -1.52
VPS53-204ENST00000437048 CXCL6P80162 114 aa5.53□□□□□ -1.52
VPS53-204ENST00000437048 TRAV26-2A0A0B4J265 109 aa5.53□□□□□ -1.52
VPS53-204ENST00000437048 LINC00308Q8TCZ7 52 aa5.52□□□□□ -1.53
VPS53-204ENST00000437048 SPAG11BQ08648 103 aa5.52□□□□□ -1.53
VPS53-204ENST00000437048 MIFP14174 115 aa5.52□□□□□ -1.53
VPS53-204ENST00000437048 CASC2Q6XLA1 102 aa5.52□□□□□ -1.53
VPS53-204ENST00000437048 COL5A1P20908 1838 aaPredicted RBP5.52□□□□□ -1.53
VPS53-204ENST00000437048 XCL2Q9UBD3 114 aa5.52□□□□□ -1.53
VPS53-204ENST00000437048 NRGNQ92686 78 aa5.52□□□□□ -1.53
VPS53-204ENST00000437048 AJUBAQ96IF1 538 aa5.52□□□□□ -1.53
VPS53-204ENST00000437048 UBE2D3P61077 147 aa5.52□□□□□ -1.53
VPS53-204ENST00000437048 Q8N9L7 120 aa5.52□□□□□ -1.53
VPS53-204ENST00000437048 TRAV23DV6A0A075B6W5 121 aa5.51□□□□□ -1.53
VPS53-204ENST00000437048 XCL1P47992 114 aa5.51□□□□□ -1.53
VPS53-204ENST00000437048 CCL18P55774 89 aa5.51□□□□□ -1.53
VPS53-204ENST00000437048 MIR7-3HGQ8N6C7 128 aa5.51□□□□□ -1.53
VPS53-204ENST00000437048 TRBV7-7A0A0K0K1E9 115 aa5.51□□□□□ -1.53
VPS53-204ENST00000437048 TMEM223A0PJW6 202 aa5.51□□□□□ -1.53
VPS53-204ENST00000437048 C9orf66Q5T8R8 295 aa5.51□□□□□ -1.53
VPS53-204ENST00000437048 IGKV2D-26A0A0A0MRZ7 120 aa5.51□□□□□ -1.53
VPS53-204ENST00000437048 IGFL4Q6B9Z1 124 aa5.51□□□□□ -1.53
VPS53-204ENST00000437048 CHCHD7Q9BUK0 85 aa5.51□□□□□ -1.53
VPS53-204ENST00000437048 ZNF80P51504 273 aaPredicted RBP5.51□□□□□ -1.53
VPS53-204ENST00000437048 CFHR3Q02985 330 aa5.51□□□□□ -1.53
VPS53-204ENST00000437048 ESM1Q9NQ30 184 aa5.51□□□□□ -1.53
VPS53-204ENST00000437048 PTPRSQ13332 1948 aa5.51□□□□□ -1.53
VPS53-204ENST00000437048 PRO0255Q9UI72 69 aa5.51□□□□□ -1.53
VPS53-204ENST00000437048 IGHV3-53P01767 116 aa5.5□□□□□ -1.53
VPS53-204ENST00000437048 RSPO1Q2MKA7 263 aaPredicted RBP5.5□□□□□ -1.53
VPS53-204ENST00000437048 WT1P19544 449 aaPredicted RBP5.5□□□□□ -1.53
VPS53-204ENST00000437048 LINC00173Q6ZV60 143 aa5.5□□□□□ -1.53
VPS53-204ENST00000437048 CRYGAP11844 174 aa5.5□□□□□ -1.53
VPS53-204ENST00000437048 IGHV3-30P01768 117 aa5.5□□□□□ -1.53
VPS53-204ENST00000437048 IGHV3-30-5P0DP03 117 aa5.5□□□□□ -1.53
VPS53-204ENST00000437048 HOXB4P17483 251 aaPredicted RBP5.5□□□□□ -1.53
VPS53-204ENST00000437048 RPL28P46779 137 aaKnown RBP5.5□□□□□ -1.53
VPS53-204ENST00000437048 Q6ZR03 302 aa5.5□□□□□ -1.53
VPS53-204ENST00000437048 LINC01561Q8N1V8 128 aa5.5□□□□□ -1.53
VPS53-204ENST00000437048 A0A087WZ39 114 aa5.5□□□□□ -1.53
VPS53-204ENST00000437048 hDV103S1A0JD37 113 aa5.5□□□□□ -1.53
VPS53-204ENST00000437048 RPL39LQ96EH5 51 aaKnown RBP5.49□□□□□ -1.53
VPS53-204ENST00000437048 H3BPC8 53 aa5.49□□□□□ -1.53
VPS53-204ENST00000437048 VWCEQ96DN2 955 aa5.49□□□□□ -1.53
VPS53-204ENST00000437048 TRIAP1O43715 76 aa5.49□□□□□ -1.53
VPS53-204ENST00000437048 KLK9Q9UKQ9 250 aa5.49□□□□□ -1.53
VPS53-204ENST00000437048 FBXL19-AS1Q494R0 122 aa5.49□□□□□ -1.53
VPS53-204ENST00000437048 FAM30AQ9NZY2 134 aa5.49□□□□□ -1.53
VPS53-204ENST00000437048 E7EQL1 145 aa5.49□□□□□ -1.53
VPS53-204ENST00000437048 IGLV1-47P01700 117 aa5.49□□□□□ -1.53
VPS53-204ENST00000437048 COX8CQ7Z4L0 72 aa5.49□□□□□ -1.53
VPS53-204ENST00000437048 THSD7BQ9C0I4 1608 aa5.49□□□□□ -1.53
VPS53-204ENST00000437048 CPAMD8Q8IZJ3 1885 aa5.48□□□□□ -1.53
VPS53-204ENST00000437048 PMAIP1Q13794 54 aa5.48□□□□□ -1.53
VPS53-204ENST00000437048 TRBV6-4A0A1B0GX49 114 aa5.48□□□□□ -1.53
VPS53-204ENST00000437048 NUPR1O60356 82 aa5.48□□□□□ -1.53
VPS53-204ENST00000437048 UBE2D1P51668 147 aa5.48□□□□□ -1.53
VPS53-204ENST00000437048 C2orf91Q6ZV80 131 aa5.48□□□□□ -1.53
VPS53-204ENST00000437048 ZFAND2AQ8N6M9 145 aa5.48□□□□□ -1.53
VPS53-204ENST00000437048 LINC00474Q9P2X8 69 aa5.48□□□□□ -1.53
VPS53-204ENST00000437048 PPDPFQ9H3Y8 114 aa5.48□□□□□ -1.53
VPS53-204ENST00000437048 IGKV4-1P06312 121 aa5.48□□□□□ -1.53
VPS53-204ENST00000437048 GYPEP15421 78 aa5.48□□□□□ -1.53
VPS53-204ENST00000437048 RPL35AP18077 110 aaKnown RBP5.48□□□□□ -1.53
VPS53-204ENST00000437048 CLEC2BQ92478 149 aa5.48□□□□□ -1.53
VPS53-204ENST00000437048 HHLA3Q9XRX5 114 aa5.48□□□□□ -1.53
VPS53-204ENST00000437048 CSDC2Q9Y534 153 aaKnown RBP5.48□□□□□ -1.53
VPS53-204ENST00000437048 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.47□□□□□ -1.53
VPS53-204ENST00000437048 IGKV2-29A2NJV5 120 aaPredicted RBP5.47□□□□□ -1.53
VPS53-204ENST00000437048 SDIM1Q6ZPB5 146 aa5.47□□□□□ -1.53
VPS53-204ENST00000437048 ZNF580Q9UK33 172 aa5.47□□□□□ -1.53
VPS53-204ENST00000437048 IGHV7-81A0A0B4J1V7 117 aa5.47□□□□□ -1.53
VPS53-204ENST00000437048 IGFL2Q6UWQ7 119 aa5.47□□□□□ -1.53
VPS53-204ENST00000437048 ZNRD1Q9P1U0 126 aa5.47□□□□□ -1.53
VPS53-204ENST00000437048 PINLYPA6NC86 204 aa5.47□□□□□ -1.53
VPS53-204ENST00000437048 MYCNOSP40205 109 aa5.47□□□□□ -1.53
VPS53-204ENST00000437048 RETNQ9HD89 108 aa5.47□□□□□ -1.53
VPS53-204ENST00000437048 DKK4Q9UBT3 224 aa5.47□□□□□ -1.53
VPS53-204ENST00000437048 ZNF22P17026 224 aaPredicted RBP5.47□□□□□ -1.53
VPS53-204ENST00000437048 COL4A5P29400 1685 aa5.47□□□□□ -1.53
VPS53-204ENST00000437048 LYNX1G3V0Z9 82 aa5.47□□□□□ -1.53
VPS53-204ENST00000437048 LYNX1P0DP58 116 aa5.47□□□□□ -1.53
VPS53-204ENST00000437048 PATE2Q6UY27 113 aa5.47□□□□□ -1.53
VPS53-204ENST00000437048 WFDC11Q8NEX6 87 aa5.47□□□□□ -1.53
VPS53-204ENST00000437048 CCKP06307 115 aa5.46□□□□□ -1.53
VPS53-204ENST00000437048 LINC01548A6NM66 108 aa5.46□□□□□ -1.53
VPS53-204ENST00000437048 RPL37AP8A6NKH3 93 aa5.46□□□□□ -1.54
VPS53-204ENST00000437048 C11orf53Q8IXP5 236 aa5.46□□□□□ -1.54
VPS53-204ENST00000437048 PRRC2CQ9Y520 2896 aaKnown RBP5.46□□□□□ -1.54
VPS53-204ENST00000437048 USP9YO00507 2555 aaPredicted RBP5.46□□□□□ -1.54
VPS53-204ENST00000437048 LYPD2Q6UXB3 125 aa5.46□□□□□ -1.54
VPS53-204ENST00000437048 C4orf3Q8WVX3 66 aa5.46□□□□□ -1.54
VPS53-204ENST00000437048 MLANAQ16655 118 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 136.5 ms