RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CXCL5P42830 114 aa2.75□□□□□ -1.97
HMGB3-203ENST00000430118 GNG5P63218 68 aa2.75□□□□□ -1.97
HMGB3-203ENST00000430118 GOLT1AQ6ZVE7 132 aa2.75□□□□□ -1.97
HMGB3-203ENST00000430118 FAM19A2Q8N3H0 131 aa2.75□□□□□ -1.97
HMGB3-203ENST00000430118 C15orf53Q8NAA6 179 aa2.75□□□□□ -1.97
HMGB3-203ENST00000430118 C11orf72Q8NBR9 251 aa2.75□□□□□ -1.97
HMGB3-203ENST00000430118 ZC2HC1AQ96GY0 325 aa2.75□□□□□ -1.97
HMGB3-203ENST00000430118 TMEM147Q9BVK8 224 aa2.75□□□□□ -1.97
HMGB3-203ENST00000430118 EDA2RQ9HAV5 297 aa2.75□□□□□ -1.97
HMGB3-203ENST00000430118 PRR34Q9NV39 138 aa2.75□□□□□ -1.97
HMGB3-203ENST00000430118 PLXNB1O43157 2135 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 COL7A1Q02388 2944 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 STARD9Q9P2P6 4700 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 TRAV4A0A0B4J268 109 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 TCRBV4S1A1TA0A5B7 111 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 A8MWV9 139 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 SSSCA1O60232 199 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 PDCD6O75340 191 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 COX7CP15954 63 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 NPPCP23582 126 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 C4orf26Q17RF5 130 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 RSPO1Q2MKA7 263 aaPredicted RBP2.74□□□□□ -1.97
HMGB3-203ENST00000430118 ABCA11PQ4W5N1 156 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 C1orf195Q5TG92 126 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 TMEM14EPQ6UXP3 125 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 FAM231DQ6ZW35 169 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 C10orf126Q8N4M7 172 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 RPP25LQ8N5L8 163 aaKnown RBP2.74□□□□□ -1.97
HMGB3-203ENST00000430118 ANKRD29Q8N6D5 301 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 WFDC9Q8NEX5 89 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 FAM104AQ969W3 186 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 CARD19Q96LW7 228 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 SLC25A39Q9BZJ4 359 aaPredicted RBP2.74□□□□□ -1.97
HMGB3-203ENST00000430118 TMEM222Q9H0R3 208 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 RPP21Q9H633 154 aaKnown RBP2.74□□□□□ -1.97
HMGB3-203ENST00000430118 ZNF331Q9NQX6 463 aaPredicted RBP2.74□□□□□ -1.97
HMGB3-203ENST00000430118 HILPDAQ9Y5L2 63 aa2.74□□□□□ -1.97
HMGB3-203ENST00000430118 HUWE1Q7Z6Z7 4374 aaKnown RBP2.74□□□□□ -1.97
HMGB3-203ENST00000430118 TRBV20OR9-2A0A075B6H5 130 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 IGLV1-50A0A075B6I6 118 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 A0A1B0GXF2 115 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 INS-IGF2F8WCM5 200 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 J3QQQ9 107 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 LGALS1P09382 135 aaKnown RBP2.73□□□□□ -1.97
HMGB3-203ENST00000430118 MYCNOSP40205 109 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 CSN1S1P47710 185 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 UBE2AP49459 152 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 FXYD2P54710 66 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 UBE2D3P61077 147 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 UBE2D2P62837 147 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 CD164Q04900 197 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 SLC38A11Q08AI6 406 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 ERCC8Q13216 396 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 RTL8BQ17RB0 113 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 ORMDL2Q53FV1 153 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 MRPL2Q5T653 305 aaKnown RBP2.73□□□□□ -1.97
HMGB3-203ENST00000430118 LYZL2Q7Z4W2 148 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 FAM19A1Q7Z5A9 133 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 DPH3Q96FX2 82 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 LINC00477Q96M19 166 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 ZNF488Q96MN9 340 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 C18orf15Q96N68 181 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 CHAC1Q9BUX1 264 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 TAS2R4Q9NYW5 299 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 TP73-AS1Q9UF72 201 aa2.73□□□□□ -1.97
HMGB3-203ENST00000430118 TANC2Q9HCD6 1990 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 ALMS1Q8TCU4 4167 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 A0A0J9YXV3 536 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 A8MWL6 223 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 H3BUX3 64 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 H7C1H1 209 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 CST7O76096 145 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 NDUFC2O95298 119 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 IGKV1D-33P01593 117 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 IGKV1-33P01594 117 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 GYPBP06028 91 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 ACYP1P07311 99 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 ASAH2BP0C7U1 165 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 SCGB1C2P0DMR2 95 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 CD28P10747 220 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 PCBD1P61457 104 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 C12orf74Q32Q52 190 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 HRCT1Q6UXD1 115 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 C6orf201Q7Z4U5 140 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 VMO1Q7Z5L0 202 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 PCP2Q8IVA1 136 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 OR5AS1Q8N127 324 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 PFN4Q8NHR9 129 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 KLF14Q8TD94 323 aaPredicted RBP2.72□□□□□ -1.97
HMGB3-203ENST00000430118 COPS9Q8WXC6 57 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 ODF3Q96PU9 254 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 TTTY10Q9BZA0 68 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 VSIRQ9H7M9 311 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 NHP2Q9NX24 153 aaKnown RBP2.72□□□□□ -1.97
HMGB3-203ENST00000430118 LAMTOR3Q9UHA4 124 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 SMAD5-AS1Q9Y6J3 95 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 R4GMQ9 66 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 WNK2Q9Y3S1 2297 aa2.72□□□□□ -1.97
HMGB3-203ENST00000430118 NOTCH3Q9UM47 2321 aa2.71□□□□□ -1.97
HMGB3-203ENST00000430118 TRAV27A0A087WT01 109 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms