RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 TRAPPC2P0DI81 140 aa2.14□□□□□ -2.07
CCDC88A-206ENST00000430086 TRAPPC2BP0DI82 140 aa2.14□□□□□ -2.07
CCDC88A-206ENST00000430086 C6orf52Q5T4I8 152 aa2.14□□□□□ -2.07
CCDC88A-206ENST00000430086 R4GMQ9 66 aa2.14□□□□□ -2.07
CCDC88A-206ENST00000430086 MYH8P13535 1937 aa2.14□□□□□ -2.07
CCDC88A-206ENST00000430086 RREB1Q92766 1687 aa2.14□□□□□ -2.07
CCDC88A-206ENST00000430086 PATJQ8NI35 1801 aa2.14□□□□□ -2.07
CCDC88A-206ENST00000430086 LAMC3Q9Y6N6 1575 aa2.14□□□□□ -2.07
CCDC88A-206ENST00000430086 EXPH5Q8NEV8 1989 aa2.14□□□□□ -2.07
CCDC88A-206ENST00000430086 PHIPQ8WWQ0 1821 aa2.13□□□□□ -2.07
CCDC88A-206ENST00000430086 TNRC6BQ9UPQ9 1833 aaKnown RBP2.13□□□□□ -2.07
CCDC88A-206ENST00000430086 UQCRHLA0A096LP55 91 aa2.13□□□□□ -2.07
CCDC88A-206ENST00000430086 CLPSL1A2RUU4 121 aa2.13□□□□□ -2.07
CCDC88A-206ENST00000430086 J3QKU1 62 aa2.13□□□□□ -2.07
CCDC88A-206ENST00000430086 UBE2D3P61077 147 aa2.13□□□□□ -2.07
CCDC88A-206ENST00000430086 UBE2D2P62837 147 aa2.13□□□□□ -2.07
CCDC88A-206ENST00000430086 SPAG11BQ08648 103 aa2.13□□□□□ -2.07
CCDC88A-206ENST00000430086 SPAG11AQ6PDA7 123 aa2.13□□□□□ -2.07
CCDC88A-206ENST00000430086 Q8N6K4 173 aa2.13□□□□□ -2.07
CCDC88A-206ENST00000430086 LINC00208Q96KT6 92 aa2.13□□□□□ -2.07
CCDC88A-206ENST00000430086 CCL19Q99731 98 aa2.13□□□□□ -2.07
CCDC88A-206ENST00000430086 CACFD1Q9UGQ2 172 aa2.13□□□□□ -2.07
CCDC88A-206ENST00000430086 UACAQ9BZF9 1416 aa2.13□□□□□ -2.07
CCDC88A-206ENST00000430086 NRXN2Q9P2S2 1712 aa2.13□□□□□ -2.07
CCDC88A-206ENST00000430086 SNRNP200O75643 2136 aaKnown RBP2.12□□□□□ -2.07
CCDC88A-206ENST00000430086 PRDM2Q13029 1718 aa2.12□□□□□ -2.07
CCDC88A-206ENST00000430086 K7EP34 96 aa2.12□□□□□ -2.07
CCDC88A-206ENST00000430086 NCR3O14931 201 aa2.12□□□□□ -2.07
CCDC88A-206ENST00000430086 PEA15Q15121 130 aa2.12□□□□□ -2.07
CCDC88A-206ENST00000430086 TMEM170BQ5T4T1 132 aa2.12□□□□□ -2.07
CCDC88A-206ENST00000430086 Q86TA4 180 aa2.12□□□□□ -2.07
CCDC88A-206ENST00000430086 DEFB119Q8N690 84 aa2.12□□□□□ -2.07
CCDC88A-206ENST00000430086 NDUFA4L2Q9NRX3 87 aa2.12□□□□□ -2.07
CCDC88A-206ENST00000430086 TMEM14BQ9NUH8 114 aa2.12□□□□□ -2.07
CCDC88A-206ENST00000430086 V9GYH0 126 aa2.12□□□□□ -2.07
CCDC88A-206ENST00000430086 SHROOM2Q13796 1616 aa2.12□□□□□ -2.07
CCDC88A-206ENST00000430086 ARHGAP35Q9NRY4 1499 aa2.12□□□□□ -2.07
CCDC88A-206ENST00000430086 ARHGEF12Q9NZN5 1544 aa2.12□□□□□ -2.07
CCDC88A-206ENST00000430086 MARF1Q9Y4F3 1742 aaKnown RBP2.11□□□□□ -2.07
CCDC88A-206ENST00000430086 VWDEQ8N2E2 1590 aa2.11□□□□□ -2.07
CCDC88A-206ENST00000430086 TRAV22A0A0B4J277 110 aa2.11□□□□□ -2.07
CCDC88A-206ENST00000430086 A0A1W2PPM0 123 aa2.11□□□□□ -2.07
CCDC88A-206ENST00000430086 CYB5AP00167 134 aa2.11□□□□□ -2.07
CCDC88A-206ENST00000430086 APOC3P02656 99 aa2.11□□□□□ -2.07
CCDC88A-206ENST00000430086 SHANK2Q9UPX8 1470 aa2.1□□□□□ -2.07
CCDC88A-206ENST00000430086 TRBV30A0A0K0K1B3 111 aa2.1□□□□□ -2.07
CCDC88A-206ENST00000430086 LINC00575Q6W349 94 aa2.1□□□□□ -2.07
CCDC88A-206ENST00000430086 RABAC1Q9UI14 185 aa2.1□□□□□ -2.07
CCDC88A-206ENST00000430086 MLH3Q9UHC1 1453 aa2.09□□□□□ -2.07
CCDC88A-206ENST00000430086 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.09□□□□□ -2.07
CCDC88A-206ENST00000430086 SYS1-DBNDD2H3BUS1 97 aa2.09□□□□□ -2.07
CCDC88A-206ENST00000430086 HMGN4O00479 90 aa2.09□□□□□ -2.07
CCDC88A-206ENST00000430086 Q5VV11 94 aa2.09□□□□□ -2.07
CCDC88A-206ENST00000430086 S100A16Q96FQ6 103 aaKnown RBP2.09□□□□□ -2.07
CCDC88A-206ENST00000430086 AMELXQ99217 191 aa2.09□□□□□ -2.07
CCDC88A-206ENST00000430086 S100A13Q99584 98 aa2.09□□□□□ -2.07
CCDC88A-206ENST00000430086 NXT2Q9NPJ8 142 aaKnown RBP2.09□□□□□ -2.07
CCDC88A-206ENST00000430086 PHRF1Q9P1Y6 1649 aaKnown RBP2.09□□□□□ -2.08
CCDC88A-206ENST00000430086 TET1Q8NFU7 2136 aa2.08□□□□□ -2.08
CCDC88A-206ENST00000430086 DOCK2Q92608 1830 aa2.08□□□□□ -2.08
CCDC88A-206ENST00000430086 UQCRHP07919 91 aa2.08□□□□□ -2.08
CCDC88A-206ENST00000430086 EFNA4P52798 201 aa2.08□□□□□ -2.08
CCDC88A-206ENST00000430086 KRTAP12-1P59990 96 aa2.08□□□□□ -2.08
CCDC88A-206ENST00000430086 C10orf99Q6UWK7 81 aa2.08□□□□□ -2.08
CCDC88A-206ENST00000430086 BAGE3Q86Y29 109 aa2.08□□□□□ -2.08
CCDC88A-206ENST00000430086 CDC42SE2Q9NRR3 84 aa2.08□□□□□ -2.08
CCDC88A-206ENST00000430086 CASP8AP2Q9UKL3 1982 aa2.08□□□□□ -2.08
CCDC88A-206ENST00000430086 KDM5AP29375 1690 aaKnown RBP2.08□□□□□ -2.08
CCDC88A-206ENST00000430086 PLIN4Q96Q06 1357 aa2.08□□□□□ -2.08
CCDC88A-206ENST00000430086 CHD1O14646 1710 aa2.08□□□□□ -2.08
CCDC88A-206ENST00000430086 PRRC2BQ5JSZ5 2229 aaKnown RBP2.07□□□□□ -2.08
CCDC88A-206ENST00000430086 ABCA4P78363 2273 aa2.07□□□□□ -2.08
CCDC88A-206ENST00000430086 TET3O43151 1660 aa2.07□□□□□ -2.08
CCDC88A-206ENST00000430086 A0A0G2JND7 137 aa2.07□□□□□ -2.08
CCDC88A-206ENST00000430086 TMEM14DPA8MWL7 114 aa2.07□□□□□ -2.08
CCDC88A-206ENST00000430086 CCL18P55774 89 aa2.07□□□□□ -2.08
CCDC88A-206ENST00000430086 SMIM11AP58511 58 aa2.07□□□□□ -2.08
CCDC88A-206ENST00000430086 PMCHL1Q16048 86 aa2.07□□□□□ -2.08
CCDC88A-206ENST00000430086 VMO1Q7Z5L0 202 aa2.07□□□□□ -2.08
CCDC88A-206ENST00000430086 C20orf78Q9BR46 151 aa2.07□□□□□ -2.08
CCDC88A-206ENST00000430086 MED13Q9UHV7 2174 aa2.07□□□□□ -2.08
CCDC88A-206ENST00000430086 PARP14Q460N5 1801 aa2.07□□□□□ -2.08
CCDC88A-206ENST00000430086 TCHHQ07283 1943 aa2.07□□□□□ -2.08
CCDC88A-206ENST00000430086 ESPL1Q14674 2120 aa2.06□□□□□ -2.08
CCDC88A-206ENST00000430086 A0A087WTM6 91 aa2.06□□□□□ -2.08
CCDC88A-206ENST00000430086 MRC1P22897 1456 aa2.06□□□□□ -2.08
CCDC88A-206ENST00000430086 TANC1Q9C0D5 1861 aa2.05□□□□□ -2.08
CCDC88A-206ENST00000430086 MED12Q93074 2177 aa2.05□□□□□ -2.08
CCDC88A-206ENST00000430086 SDK1Q7Z5N4 2213 aa2.05□□□□□ -2.08
CCDC88A-206ENST00000430086 OTOGLQ3ZCN5 2332 aa2.05□□□□□ -2.08
CCDC88A-206ENST00000430086 CTXND1A0A1B0GTU2 59 aa2.05□□□□□ -2.08
CCDC88A-206ENST00000430086 F8VRH5 84 aa2.05□□□□□ -2.08
CCDC88A-206ENST00000430086 H3BQF6 201 aa2.05□□□□□ -2.08
CCDC88A-206ENST00000430086 SFTA2Q6UW10 78 aa2.05□□□□□ -2.08
CCDC88A-206ENST00000430086 WFDC6Q9BQY6 131 aa2.05□□□□□ -2.08
CCDC88A-206ENST00000430086 CEP162Q5TB80 1403 aa2.05□□□□□ -2.08
CCDC88A-206ENST00000430086 EPRSP07814 1512 aaKnown RBP2.05□□□□□ -2.08
CCDC88A-206ENST00000430086 AFDNP55196 1824 aaKnown RBP2.05□□□□□ -2.08
CCDC88A-206ENST00000430086 BCE1O60756 84 aa2.04□□□□□ -2.08
CCDC88A-206ENST00000430086 ATP10BO94823 1461 aa2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms