RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 UBE2E2Q96LR5 201 aa9.24□□□□□ -0.93
CDH3-202ENST00000429102 TNFRSF18Q9Y5U5 241 aa9.24□□□□□ -0.93
CDH3-202ENST00000429102 PRSS47A8MTI9 375 aa9.24□□□□□ -0.93
CDH3-202ENST00000429102 TEN1Q86WV5 123 aa9.24□□□□□ -0.93
CDH3-202ENST00000429102 A0A1W2PRX2 142 aa9.23□□□□□ -0.93
CDH3-202ENST00000429102 MSMBP08118 114 aa9.23□□□□□ -0.93
CDH3-202ENST00000429102 SLURP1P55000 103 aa9.23□□□□□ -0.93
CDH3-202ENST00000429102 SLC25A29Q8N8R3 303 aa9.23□□□□□ -0.93
CDH3-202ENST00000429102 CLEC2BQ92478 149 aa9.23□□□□□ -0.93
CDH3-202ENST00000429102 IGHV4OR15-8A0A075B7B6 117 aa9.23□□□□□ -0.93
CDH3-202ENST00000429102 A0A087WW49 117 aa9.23□□□□□ -0.93
CDH3-202ENST00000429102 C2orf82Q6UX34 121 aa9.23□□□□□ -0.93
CDH3-202ENST00000429102 SPATA25Q9BR10 227 aa9.23□□□□□ -0.93
CDH3-202ENST00000429102 ZNF22P17026 224 aaPredicted RBP9.22□□□□□ -0.93
CDH3-202ENST00000429102 KLLNB2CW77 178 aa9.22□□□□□ -0.93
CDH3-202ENST00000429102 TIMM21Q9BVV7 248 aa9.22□□□□□ -0.93
CDH3-202ENST00000429102 A6NDX4 124 aa9.22□□□□□ -0.93
CDH3-202ENST00000429102 TCTEX1D4Q5JR98 221 aa9.22□□□□□ -0.93
CDH3-202ENST00000429102 PAPPA-AS1Q5QFB9 102 aa9.22□□□□□ -0.93
CDH3-202ENST00000429102 LINC01587Q99440 93 aa9.22□□□□□ -0.93
CDH3-202ENST00000429102 RHODO00212 210 aa9.21□□□□□ -0.93
CDH3-202ENST00000429102 TRAV8-4A0A0B4J246 113 aa9.21□□□□□ -0.94
CDH3-202ENST00000429102 A0A0J9YX75 114 aa9.21□□□□□ -0.94
CDH3-202ENST00000429102 NDUFA7O95182 113 aa9.21□□□□□ -0.94
CDH3-202ENST00000429102 IGHV3-30-3P0DP02 117 aa9.21□□□□□ -0.94
CDH3-202ENST00000429102 UCNP55089 124 aa9.21□□□□□ -0.94
CDH3-202ENST00000429102 TMEM141Q96I45 108 aa9.21□□□□□ -0.94
CDH3-202ENST00000429102 IGLV4-3A0A075B6K6 122 aa9.2□□□□□ -0.94
CDH3-202ENST00000429102 I3L3M4 83 aa9.2□□□□□ -0.94
CDH3-202ENST00000429102 CFHR3Q02985 330 aa9.2□□□□□ -0.94
CDH3-202ENST00000429102 XCL2Q9UBD3 114 aa9.2□□□□□ -0.94
CDH3-202ENST00000429102 EIF4EBP3O60516 100 aaPredicted RBP9.2□□□□□ -0.94
CDH3-202ENST00000429102 HOXD3P31249 432 aaPredicted RBP9.2□□□□□ -0.94
CDH3-202ENST00000429102 ADAMTSL4-AS1Q5T5F5 129 aa9.2□□□□□ -0.94
CDH3-202ENST00000429102 Q6ZSN1 163 aa9.2□□□□□ -0.94
CDH3-202ENST00000429102 C20orf203Q8NBC4 194 aa9.2□□□□□ -0.94
CDH3-202ENST00000429102 RBMY1A1P0DJD3 496 aaKnown RBP9.2□□□□□ -0.94
CDH3-202ENST00000429102 RBMY1CP0DJD4 496 aa9.2□□□□□ -0.94
CDH3-202ENST00000429102 RBMY1FQ15415 496 aaKnown RBP9.2□□□□□ -0.94
CDH3-202ENST00000429102 NDUFA12Q9UI09 145 aa9.2□□□□□ -0.94
CDH3-202ENST00000429102 TRAV13-1A0A0B4J241 112 aa9.19□□□□□ -0.94
CDH3-202ENST00000429102 TRAV4A0A0B4J268 109 aa9.19□□□□□ -0.94
CDH3-202ENST00000429102 UBE2D3P61077 147 aa9.19□□□□□ -0.94
CDH3-202ENST00000429102 UBE2D2P62837 147 aa9.19□□□□□ -0.94
CDH3-202ENST00000429102 C10orf105Q8TEF2 133 aa9.19□□□□□ -0.94
CDH3-202ENST00000429102 A0A0J9YXY3 114 aa9.19□□□□□ -0.94
CDH3-202ENST00000429102 TRBV27A0A0K0K1C4 114 aa9.19□□□□□ -0.94
CDH3-202ENST00000429102 IGHV3-33P01772 117 aa9.19□□□□□ -0.94
CDH3-202ENST00000429102 C15orf53Q8NAA6 179 aa9.19□□□□□ -0.94
CDH3-202ENST00000429102 TIMM17AQ99595 171 aa9.19□□□□□ -0.94
CDH3-202ENST00000429102 MEIG1Q5JSS6 88 aa9.18□□□□□ -0.94
CDH3-202ENST00000429102 TMEM223A0PJW6 202 aa9.18□□□□□ -0.94
CDH3-202ENST00000429102 CRLF1O75462 422 aa9.18□□□□□ -0.94
CDH3-202ENST00000429102 COX6CP09669 75 aa9.18□□□□□ -0.94
CDH3-202ENST00000429102 TOMM7Q9P0U1 55 aa9.18□□□□□ -0.94
CDH3-202ENST00000429102 M0R2P5 195 aa9.18□□□□□ -0.94
CDH3-202ENST00000429102 C19orf54Q5BKX5 351 aa9.18□□□□□ -0.94
CDH3-202ENST00000429102 TRIAP1O43715 76 aa9.17□□□□□ -0.94
CDH3-202ENST00000429102 FAM19A4Q96LR4 140 aa9.17□□□□□ -0.94
CDH3-202ENST00000429102 GCN1Q92616 2671 aaKnown RBP9.17□□□□□ -0.94
CDH3-202ENST00000429102 LEPROTO15243 131 aa9.17□□□□□ -0.94
CDH3-202ENST00000429102 PRB1P04280 392 aa9.16□□□□□ -0.94
CDH3-202ENST00000429102 RPL13AP40429 203 aaKnown RBP9.16□□□□□ -0.94
CDH3-202ENST00000429102 AMELXQ99217 191 aa9.16□□□□□ -0.94
CDH3-202ENST00000429102 LGALS9O00182 355 aa9.16□□□□□ -0.94
CDH3-202ENST00000429102 SCGB1A1P11684 91 aa9.16□□□□□ -0.94
CDH3-202ENST00000429102 IGLV1-40P01703 118 aa9.16□□□□□ -0.94
CDH3-202ENST00000429102 ATXN8Q156A1 80 aa9.16□□□□□ -0.94
CDH3-202ENST00000429102 SMIM20Q8N5G0 67 aa9.16□□□□□ -0.94
CDH3-202ENST00000429102 LINC01620Q4KN68 170 aa9.15□□□□□ -0.94
CDH3-202ENST00000429102 B4DSR2 109 aa9.15□□□□□ -0.94
CDH3-202ENST00000429102 K7EQG2 157 aa9.15□□□□□ -0.94
CDH3-202ENST00000429102 DYNLRB2Q8TF09 96 aa9.15□□□□□ -0.94
CDH3-202ENST00000429102 TMEM263Q8WUH6 116 aaKnown RBP9.15□□□□□ -0.94
CDH3-202ENST00000429102 LINC00467Q9BRT7 94 aa9.15□□□□□ -0.94
CDH3-202ENST00000429102 C11orf68Q9H3H3 251 aaKnown RBP9.15□□□□□ -0.94
CDH3-202ENST00000429102 CDKN2A-AS1Q9UH64 79 aa9.15□□□□□ -0.94
CDH3-202ENST00000429102 H3BMM0 161 aa9.14□□□□□ -0.95
CDH3-202ENST00000429102 TMEM61Q8N0U2 210 aa9.14□□□□□ -0.95
CDH3-202ENST00000429102 UBE2WQ96B02 151 aa9.14□□□□□ -0.95
CDH3-202ENST00000429102 C9orf85Q96MD7 179 aa9.14□□□□□ -0.95
CDH3-202ENST00000429102 FLNAP21333 2647 aaKnown RBP9.14□□□□□ -0.95
CDH3-202ENST00000429102 TMEM262E9PQX1 116 aa9.14□□□□□ -0.95
CDH3-202ENST00000429102 CCDC179H3BU77 68 aa9.14□□□□□ -0.95
CDH3-202ENST00000429102 MED14OSP0DP75 135 aa9.14□□□□□ -0.95
CDH3-202ENST00000429102 PSMB8P28062 276 aa9.14□□□□□ -0.95
CDH3-202ENST00000429102 POM121L12Q8N7R1 296 aa9.14□□□□□ -0.95
CDH3-202ENST00000429102 TRGV1A0A0A0MS02 117 aa9.13□□□□□ -0.95
CDH3-202ENST00000429102 RNASE1P07998 156 aaKnown RBP9.12□□□□□ -0.95
CDH3-202ENST00000429102 TRGV11A0A075B6L2 103 aa9.11□□□□□ -0.95
CDH3-202ENST00000429102 LINC01619G3V211 115 aa9.11□□□□□ -0.95
CDH3-202ENST00000429102 NXPH4O95158 308 aa9.11□□□□□ -0.95
CDH3-202ENST00000429102 CHCHD5Q9BSY4 110 aa9.11□□□□□ -0.95
CDH3-202ENST00000429102 GAGE5Q13069 117 aa9.11□□□□□ -0.95
CDH3-202ENST00000429102 GAGE6Q13070 117 aa9.11□□□□□ -0.95
CDH3-202ENST00000429102 Q9H8V8 135 aa9.11□□□□□ -0.95
CDH3-202ENST00000429102 ICOSQ9Y6W8 199 aa9.11□□□□□ -0.95
CDH3-202ENST00000429102 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.1□□□□□ -0.95
CDH3-202ENST00000429102 RBMY1BA6NDE4 496 aaKnown RBP9.1□□□□□ -0.95
CDH3-202ENST00000429102 RBMY1EA6NEQ0 496 aaKnown RBP9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms