RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 HIGD1CA8MV81 97 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 K7EMI3 77 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 IGLV3-1P01715 115 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 IL4P05112 153 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 CD7P09564 240 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 EDDM3BP56851 147 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 Q6ZRU5 148 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 C18orf65Q6ZTR6 163 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 PDPNQ86YL7 162 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 KRTAP1-3Q8IUG1 177 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 MYOZ3Q8TDC0 251 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 ZNF414Q96IQ9 312 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 KRTAP9-2Q9BYQ4 174 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 C8orf17Q9NRJ1 99 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 ZNF355PQ9NSJ1 428 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 KLK5Q9Y337 293 aaPredicted RBP3.51□□□□□ -1.85
VPS13A-207ENST00000419472 CSMD2Q7Z408 3487 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 TRBV7-3A0A075B6L6 115 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 IGKV2D-26A0A0A0MRZ7 120 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 IGKV1-12A0A0C4DH73 117 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 MYMXA0A1B0GTQ4 84 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.51□□□□□ -1.85
VPS13A-207ENST00000419472 IGKV1D-12P01611 117 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 CMC4P56277 68 aaPredicted RBP3.51□□□□□ -1.85
VPS13A-207ENST00000419472 EBI3Q14213 229 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 LYRM7Q5U5X0 104 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 UBALD1Q8TB05 177 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 IMUPQ9GZP8 106 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 HHLA3Q9XRX5 114 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 PDZD2O15018 2839 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 ARHGAP21Q5T5U3 1957 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 TRAV2A0A0B4J234 112 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 A0A0U1RQV1 116 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 FAM168BA1KXE4 195 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 LGALS9O00182 355 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 TLX1NBP0CAT3 122 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 CD24P25063 80 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 MP68P56378 58 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 PCBD1P61457 104 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 ZFP2Q6ZN57 461 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 C9orf106Q8NAJ2 232 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 OR8A1Q8NGG7 326 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 ZNF580Q9UK33 172 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 CELSR1Q9NYQ6 3014 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 PKD1L1Q8TDX9 2849 aa3.5□□□□□ -1.85
VPS13A-207ENST00000419472 FLNAP21333 2647 aaKnown RBP3.5□□□□□ -1.85
VPS13A-207ENST00000419472 IGKV3D-15A0A087WSY6 115 aa3.5□□□□□ -1.85
VPS13A-207ENST00000419472 TRAV8-1A0A0A6YYK1 113 aa3.5□□□□□ -1.85
VPS13A-207ENST00000419472 OVOL1O14753 267 aa3.5□□□□□ -1.85
VPS13A-207ENST00000419472 NPYP01303 97 aa3.5□□□□□ -1.85
VPS13A-207ENST00000419472 TFF1P04155 84 aa3.5□□□□□ -1.85
VPS13A-207ENST00000419472 LYZP61626 148 aa3.5□□□□□ -1.85
VPS13A-207ENST00000419472 ZNF329Q86UD4 541 aa3.5□□□□□ -1.85
VPS13A-207ENST00000419472 KRTAP7-1Q8IUC3 87 aa3.5□□□□□ -1.85
VPS13A-207ENST00000419472 EPDR1Q9UM22 224 aa3.5□□□□□ -1.85
VPS13A-207ENST00000419472 C19orf71A6NCJ1 209 aa3.5□□□□□ -1.85
VPS13A-207ENST00000419472 UBE2AP49459 152 aa3.5□□□□□ -1.85
VPS13A-207ENST00000419472 TMEM258P61165 79 aa3.5□□□□□ -1.85
VPS13A-207ENST00000419472 TMEM167BQ9NRX6 74 aa3.5□□□□□ -1.85
VPS13A-207ENST00000419472 USF3Q68DE3 2245 aa3.5□□□□□ -1.85
VPS13A-207ENST00000419472 TCL1BO95988 128 aa3.49□□□□□ -1.85
VPS13A-207ENST00000419472 COX7CP15954 63 aa3.49□□□□□ -1.85
VPS13A-207ENST00000419472 HLA-DMBP28068 263 aa3.49□□□□□ -1.85
VPS13A-207ENST00000419472 PMAIP1Q13794 54 aa3.49□□□□□ -1.85
VPS13A-207ENST00000419472 ITLN2Q8WWU7 325 aaPredicted RBP3.49□□□□□ -1.85
VPS13A-207ENST00000419472 CAMK2N2Q96S95 79 aa3.49□□□□□ -1.85
VPS13A-207ENST00000419472 TRGV9Q99603 122 aa3.49□□□□□ -1.85
VPS13A-207ENST00000419472 MGST2Q99735 147 aa3.49□□□□□ -1.85
VPS13A-207ENST00000419472 KRTAP9-3Q9BYQ3 159 aa3.49□□□□□ -1.85
VPS13A-207ENST00000419472 GFRA4Q9GZZ7 299 aa3.49□□□□□ -1.85
VPS13A-207ENST00000419472 DOCK11Q5JSL3 2073 aa3.49□□□□□ -1.85
VPS13A-207ENST00000419472 CELSR2Q9HCU4 2923 aa3.49□□□□□ -1.85
VPS13A-207ENST00000419472 HIVEP3Q5T1R4 2406 aa3.49□□□□□ -1.85
VPS13A-207ENST00000419472 TMSB15BA0A087X1C1 80 aa3.49□□□□□ -1.85
VPS13A-207ENST00000419472 IGHV3-72A0A0B4J1Y9 119 aa3.49□□□□□ -1.85
VPS13A-207ENST00000419472 IGHV3-66A0A0C4DH42 116 aa3.49□□□□□ -1.85
VPS13A-207ENST00000419472 IGKV1-6A0A0C4DH72 117 aa3.49□□□□□ -1.85
VPS13A-207ENST00000419472 AMN1Q8IY45 258 aa3.49□□□□□ -1.85
VPS13A-207ENST00000419472 EXOC3-AS1Q8N2X6 119 aa3.49□□□□□ -1.85
VPS13A-207ENST00000419472 IFI27L1Q96BM0 104 aa3.49□□□□□ -1.85
VPS13A-207ENST00000419472 TTTY13Q9BZ97 58 aa3.49□□□□□ -1.85
VPS13A-207ENST00000419472 TIMM8BQ9Y5J9 83 aaPredicted RBP3.49□□□□□ -1.85
VPS13A-207ENST00000419472 HRNRQ86YZ3 2850 aaPredicted RBP3.48□□□□□ -1.85
VPS13A-207ENST00000419472 FAM236DA0A1B0GTK5 79 aa3.48□□□□□ -1.85
VPS13A-207ENST00000419472 A0A1B0GVX0 72 aa3.48□□□□□ -1.85
VPS13A-207ENST00000419472 A6NDX4 124 aa3.48□□□□□ -1.85
VPS13A-207ENST00000419472 LY6LH3BQJ8 138 aa3.48□□□□□ -1.85
VPS13A-207ENST00000419472 H3BVH4 76 aa3.48□□□□□ -1.85
VPS13A-207ENST00000419472 TRACP01848 142 aa3.48□□□□□ -1.85
VPS13A-207ENST00000419472 FAM236CP0DP71 79 aa3.48□□□□□ -1.85
VPS13A-207ENST00000419472 MIC13Q5XKP0 118 aa3.48□□□□□ -1.85
VPS13A-207ENST00000419472 SCGB1D4Q6XE38 83 aa3.48□□□□□ -1.85
VPS13A-207ENST00000419472 ZNF826PQ6ZT77 177 aa3.48□□□□□ -1.85
VPS13A-207ENST00000419472 Q8N9W7 124 aa3.48□□□□□ -1.85
VPS13A-207ENST00000419472 USP9YO00507 2555 aaPredicted RBP3.48□□□□□ -1.85
VPS13A-207ENST00000419472 LOC107984156A0A0G2JMH3 177 aa3.48□□□□□ -1.85
VPS13A-207ENST00000419472 LINC01549A6NIU2 74 aa3.48□□□□□ -1.85
VPS13A-207ENST00000419472 SLC25A20O43772 301 aa3.48□□□□□ -1.85
VPS13A-207ENST00000419472 LGALS1P09382 135 aaKnown RBP3.48□□□□□ -1.85
VPS13A-207ENST00000419472 UBE2D1P51668 147 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms