RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 HLA-DRB4X5D2U9 266 aa7.64□□□□□ -1.19
COL6A3-205ENST00000392004 C19orf54Q5BKX5 351 aa7.64□□□□□ -1.19
COL6A3-205ENST00000392004 Q6ZTI0 123 aa7.64□□□□□ -1.19
COL6A3-205ENST00000392004 A0A0U1RRA0 63 aa7.63□□□□□ -1.19
COL6A3-205ENST00000392004 RNASE13Q5GAN3 156 aaKnown RBP7.63□□□□□ -1.19
COL6A3-205ENST00000392004 IGHV3-64A0A075B6Q5 118 aa7.63□□□□□ -1.19
COL6A3-205ENST00000392004 H3BMG7 143 aa7.63□□□□□ -1.19
COL6A3-205ENST00000392004 HERV-K104P63124 156 aa7.63□□□□□ -1.19
COL6A3-205ENST00000392004 TRAV8-2A0A0B4J237 113 aa7.62□□□□□ -1.19
COL6A3-205ENST00000392004 TRAV13-1A0A0B4J241 112 aa7.62□□□□□ -1.19
COL6A3-205ENST00000392004 PSCAO43653 123 aa7.62□□□□□ -1.19
COL6A3-205ENST00000392004 TNFRSF6BO95407 300 aa7.62□□□□□ -1.19
COL6A3-205ENST00000392004 SH2D6Q7Z4S9 175 aa7.62□□□□□ -1.19
COL6A3-205ENST00000392004 MRPL53Q96EL3 112 aaKnown RBP7.62□□□□□ -1.19
COL6A3-205ENST00000392004 IGKV2D-26A0A0A0MRZ7 120 aa7.62□□□□□ -1.19
COL6A3-205ENST00000392004 SPANXB1Q9NS25 103 aaPredicted RBP7.62□□□□□ -1.19
COL6A3-205ENST00000392004 GAGE6Q13070 117 aa7.62□□□□□ -1.19
COL6A3-205ENST00000392004 C11orf45Q8TAV5 145 aa7.62□□□□□ -1.19
COL6A3-205ENST00000392004 ANAPC13Q9BS18 74 aa7.62□□□□□ -1.19
COL6A3-205ENST00000392004 DPH3P1Q9H4G8 78 aa7.62□□□□□ -1.19
COL6A3-205ENST00000392004 IGLV1-51P01701 117 aa7.62□□□□□ -1.19
COL6A3-205ENST00000392004 KRTAP10-3P60369 221 aa7.62□□□□□ -1.19
COL6A3-205ENST00000392004 TAL2Q16559 108 aa7.62□□□□□ -1.19
COL6A3-205ENST00000392004 C12orf74Q32Q52 190 aa7.62□□□□□ -1.19
COL6A3-205ENST00000392004 E9PLD3 99 aa7.61□□□□□ -1.19
COL6A3-205ENST00000392004 DCANP1Q8TF63 244 aa7.61□□□□□ -1.19
COL6A3-205ENST00000392004 GYPEP15421 78 aa7.61□□□□□ -1.19
COL6A3-205ENST00000392004 TMEM170BQ5T4T1 132 aa7.61□□□□□ -1.19
COL6A3-205ENST00000392004 AMTNQ6UX39 209 aa7.61□□□□□ -1.19
COL6A3-205ENST00000392004 MRAP2Q96G30 205 aa7.61□□□□□ -1.19
COL6A3-205ENST00000392004 TM2D2Q9BX73 214 aa7.61□□□□□ -1.19
COL6A3-205ENST00000392004 TRAV26-1A0A087WT03 109 aa7.61□□□□□ -1.19
COL6A3-205ENST00000392004 K7EMI3 77 aa7.61□□□□□ -1.19
COL6A3-205ENST00000392004 APOMO95445 188 aa7.61□□□□□ -1.19
COL6A3-205ENST00000392004 CRPP02741 224 aa7.61□□□□□ -1.19
COL6A3-205ENST00000392004 SPATA3Q8NHX4 192 aa7.61□□□□□ -1.19
COL6A3-205ENST00000392004 TMEM101Q96IK0 257 aa7.61□□□□□ -1.19
COL6A3-205ENST00000392004 SCGB3A1Q96QR1 104 aa7.6□□□□□ -1.19
COL6A3-205ENST00000392004 P0DMU3 169 aa7.6□□□□□ -1.19
COL6A3-205ENST00000392004 FAM231AP0DMU4 169 aa7.6□□□□□ -1.19
COL6A3-205ENST00000392004 FAM231CP0DMU5 169 aa7.6□□□□□ -1.19
COL6A3-205ENST00000392004 LYRM7Q5U5X0 104 aa7.6□□□□□ -1.19
COL6A3-205ENST00000392004 MRPL35Q9NZE8 188 aaKnown RBP7.6□□□□□ -1.19
COL6A3-205ENST00000392004 CYSLTR1Q9Y271 337 aa7.6□□□□□ -1.19
COL6A3-205ENST00000392004 ATP5G1P05496 136 aa7.59□□□□□ -1.19
COL6A3-205ENST00000392004 Q8N8P6 123 aa7.59□□□□□ -1.19
COL6A3-205ENST00000392004 M0R2P5 195 aa7.59□□□□□ -1.19
COL6A3-205ENST00000392004 SCGB1C2P0DMR2 95 aa7.59□□□□□ -1.19
COL6A3-205ENST00000392004 CRYBA4P53673 196 aa7.59□□□□□ -1.19
COL6A3-205ENST00000392004 FBN1P35555 2871 aaKnown RBP7.59□□□□□ -1.19
COL6A3-205ENST00000392004 NANOS2P60321 138 aaKnown RBP7.59□□□□□ -1.19
COL6A3-205ENST00000392004 LAGE3Q14657 143 aa7.59□□□□□ -1.19
COL6A3-205ENST00000392004 IGLV2-18A0A075B6J9 118 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 LOC107984156A0A0G2JMH3 177 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 A0A0J9YWU9 116 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 PRR9Q5T870 116 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 MORN3Q6PF18 240 aaPredicted RBP7.58□□□□□ -1.2
COL6A3-205ENST00000392004 SCGB1D4Q6XE38 83 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 ARL17AQ8IVW1 177 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 SPATA25Q9BR10 227 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 HHLA3Q9XRX5 114 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 IGLV10-54A0A075B6I4 117 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 ADARB2-AS1A8MUL3 147 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.58□□□□□ -1.2
COL6A3-205ENST00000392004 IGHV3-30P01768 117 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 IGHV3-33P01772 117 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 IGHV3-30-3P0DP02 117 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 IGHV3-30-5P0DP03 117 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 PLNP26678 52 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 SRSF9Q13242 221 aaKnown RBP eCLIP7.58□□□□□ -1.2
COL6A3-205ENST00000392004 TTC32Q5I0X7 151 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 IGHV4-28A0A0C4DH34 117 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 SDHAF1A6NFY7 115 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 SPINK8P0C7L1 97 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 C9orf47Q6ZRZ4 202 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 Q8N2B8 174 aa7.58□□□□□ -1.2
COL6A3-205ENST00000392004 RPL39LQ96EH5 51 aaKnown RBP7.57□□□□□ -1.2
COL6A3-205ENST00000392004 PDZD2O15018 2839 aa7.57□□□□□ -1.2
COL6A3-205ENST00000392004 STAB2Q8WWQ8 2551 aa7.57□□□□□ -1.2
COL6A3-205ENST00000392004 PRSS2P07478 247 aa7.57□□□□□ -1.2
COL6A3-205ENST00000392004 IGLC6P0CF74 106 aa7.57□□□□□ -1.2
COL6A3-205ENST00000392004 PGPEP1Q9NXJ5 209 aa7.57□□□□□ -1.2
COL6A3-205ENST00000392004 M0R2N4 97 aa7.57□□□□□ -1.2
COL6A3-205ENST00000392004 A8MWV9 139 aa7.56□□□□□ -1.2
COL6A3-205ENST00000392004 ANGP03950 147 aaKnown RBP7.56□□□□□ -1.2
COL6A3-205ENST00000392004 CRIP2P52943 208 aaPredicted RBP7.56□□□□□ -1.2
COL6A3-205ENST00000392004 RNF185Q96GF1 192 aa7.56□□□□□ -1.2
COL6A3-205ENST00000392004 DEFB131BA0A096LNP1 70 aa7.56□□□□□ -1.2
COL6A3-205ENST00000392004 MALP21145 153 aa7.56□□□□□ -1.2
COL6A3-205ENST00000392004 PSMB2P49721 201 aa7.56□□□□□ -1.2
COL6A3-205ENST00000392004 MAPKAPK5-AS1Q8N8E1 139 aa7.56□□□□□ -1.2
COL6A3-205ENST00000392004 UBE2WQ96B02 151 aa7.56□□□□□ -1.2
COL6A3-205ENST00000392004 C16orf74Q96GX8 76 aa7.56□□□□□ -1.2
COL6A3-205ENST00000392004 ZFAND2AQ8N6M9 145 aa7.55□□□□□ -1.2
COL6A3-205ENST00000392004 MYMXA0A1B0GTQ4 84 aa7.55□□□□□ -1.2
COL6A3-205ENST00000392004 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.55□□□□□ -1.2
COL6A3-205ENST00000392004 IGKV2-29A2NJV5 120 aaPredicted RBP7.55□□□□□ -1.2
COL6A3-205ENST00000392004 MRPS12O15235 138 aaKnown RBP7.55□□□□□ -1.2
COL6A3-205ENST00000392004 GAS8-AS1O95177 125 aa7.54□□□□□ -1.2
COL6A3-205ENST00000392004 SFTA2Q6UW10 78 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms