RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 IGHV4-38-2P0DP08 117 aa6.72□□□□□ -1.33
LIG3-202ENST00000378526 HHLA3Q9XRX5 114 aa6.72□□□□□ -1.33
LIG3-202ENST00000378526 C20orf203Q8NBC4 194 aa6.72□□□□□ -1.33
LIG3-202ENST00000378526 Q6ZQY7 126 aa6.72□□□□□ -1.33
LIG3-202ENST00000378526 GGNQ86UU5 652 aa6.72□□□□□ -1.33
LIG3-202ENST00000378526 C5orf67F2Z3F1 127 aa6.72□□□□□ -1.33
LIG3-202ENST00000378526 PRM2P04554 102 aa6.72□□□□□ -1.33
LIG3-202ENST00000378526 COX17Q14061 63 aa6.72□□□□□ -1.33
LIG3-202ENST00000378526 ZNF883P0CG24 379 aa6.72□□□□□ -1.33
LIG3-202ENST00000378526 LINC00205P59089 165 aa6.72□□□□□ -1.33
LIG3-202ENST00000378526 RETNLBQ9BQ08 111 aa6.72□□□□□ -1.33
LIG3-202ENST00000378526 HIGD2AQ9BW72 106 aa6.72□□□□□ -1.33
LIG3-202ENST00000378526 Q6ZVQ6 151 aa6.71□□□□□ -1.33
LIG3-202ENST00000378526 SPINT4Q6UDR6 99 aa6.71□□□□□ -1.34
LIG3-202ENST00000378526 FOXL2NBQ6ZUU3 175 aa6.71□□□□□ -1.34
LIG3-202ENST00000378526 A0A096LPF7 62 aa6.71□□□□□ -1.34
LIG3-202ENST00000378526 Q6ZR03 302 aa6.71□□□□□ -1.34
LIG3-202ENST00000378526 ADAMTS20P59510 1910 aa6.71□□□□□ -1.34
LIG3-202ENST00000378526 C5orf24Q7Z6I8 188 aa6.71□□□□□ -1.34
LIG3-202ENST00000378526 CCDC140Q96MF4 163 aa6.71□□□□□ -1.34
LIG3-202ENST00000378526 SPART-AS1P0CW21 52 aa6.7□□□□□ -1.34
LIG3-202ENST00000378526 ZNF706Q9Y5V0 76 aaPredicted RBP6.7□□□□□ -1.34
LIG3-202ENST00000378526 CRYGAP11844 174 aa6.7□□□□□ -1.34
LIG3-202ENST00000378526 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.7□□□□□ -1.34
LIG3-202ENST00000378526 SPRR3Q9UBC9 169 aa6.7□□□□□ -1.34
LIG3-202ENST00000378526 PYGO1Q9Y3Y4 419 aa6.7□□□□□ -1.34
LIG3-202ENST00000378526 COL8A2P25067 703 aa6.7□□□□□ -1.34
LIG3-202ENST00000378526 C2orf91Q6ZV80 131 aa6.69□□□□□ -1.34
LIG3-202ENST00000378526 C17orf58Q2M2W7 97 aa6.69□□□□□ -1.34
LIG3-202ENST00000378526 NPBQ8NG41 125 aa6.69□□□□□ -1.34
LIG3-202ENST00000378526 TRBV6-5A0A0K0K1A5 114 aa6.69□□□□□ -1.34
LIG3-202ENST00000378526 C19orf71A6NCJ1 209 aa6.69□□□□□ -1.34
LIG3-202ENST00000378526 TGFBR3LH3BV60 316 aa6.69□□□□□ -1.34
LIG3-202ENST00000378526 LINC00208Q96KT6 92 aa6.69□□□□□ -1.34
LIG3-202ENST00000378526 IGHV4-61A0A0C4DH41 118 aa6.68□□□□□ -1.34
LIG3-202ENST00000378526 WFDC13Q8IUB5 93 aa6.68□□□□□ -1.34
LIG3-202ENST00000378526 ZFAND2AQ8N6M9 145 aa6.68□□□□□ -1.34
LIG3-202ENST00000378526 C22orf34Q6ZV56 151 aa6.68□□□□□ -1.34
LIG3-202ENST00000378526 BRWD3Q6RI45 1802 aa6.68□□□□□ -1.34
LIG3-202ENST00000378526 Q8N9W7 124 aa6.68□□□□□ -1.34
LIG3-202ENST00000378526 BCE1O60756 84 aa6.68□□□□□ -1.34
LIG3-202ENST00000378526 TNS1Q9HBL0 1735 aaKnown RBP6.68□□□□□ -1.34
LIG3-202ENST00000378526 A0A0J9YX75 114 aa6.68□□□□□ -1.34
LIG3-202ENST00000378526 MBD3L4A6NDZ8 208 aaPredicted RBP6.68□□□□□ -1.34
LIG3-202ENST00000378526 MBD3L3A6NE82 208 aaPredicted RBP6.68□□□□□ -1.34
LIG3-202ENST00000378526 MBD3L5A6NJ08 208 aaPredicted RBP6.68□□□□□ -1.34
LIG3-202ENST00000378526 LYNX1G3V0Z9 82 aa6.68□□□□□ -1.34
LIG3-202ENST00000378526 LYNX1P0DP58 116 aa6.68□□□□□ -1.34
LIG3-202ENST00000378526 FAM208BQ5VWN6 2430 aa6.68□□□□□ -1.34
LIG3-202ENST00000378526 C15orf65H3BRN8 121 aa6.68□□□□□ -1.34
LIG3-202ENST00000378526 KIAA1671Q9BY89 1806 aa6.67□□□□□ -1.34
LIG3-202ENST00000378526 SLPIP03973 132 aa6.67□□□□□ -1.34
LIG3-202ENST00000378526 BRD3OSQ6XYD6 125 aa6.67□□□□□ -1.34
LIG3-202ENST00000378526 C4orf26Q17RF5 130 aa6.67□□□□□ -1.34
LIG3-202ENST00000378526 ARTNQ5T4W7 220 aa6.67□□□□□ -1.34
LIG3-202ENST00000378526 FAM167A-AS1Q96KT0 104 aa6.67□□□□□ -1.34
LIG3-202ENST00000378526 MSRB1Q9NZV6 116 aa6.66□□□□□ -1.34
LIG3-202ENST00000378526 TMEM89A2RUT3 159 aa6.66□□□□□ -1.34
LIG3-202ENST00000378526 HILS1P60008 231 aa6.66□□□□□ -1.34
LIG3-202ENST00000378526 U3KQK5 164 aa6.66□□□□□ -1.34
LIG3-202ENST00000378526 RIF1Q5UIP0 2472 aaKnown RBP6.66□□□□□ -1.34
LIG3-202ENST00000378526 NHSL1Q5SYE7 1610 aa6.66□□□□□ -1.34
LIG3-202ENST00000378526 CCL24O00175 119 aa6.65□□□□□ -1.34
LIG3-202ENST00000378526 SPRY2O43597 315 aa6.65□□□□□ -1.34
LIG3-202ENST00000378526 Q8N3U1 123 aa6.65□□□□□ -1.34
LIG3-202ENST00000378526 G3V318 75 aa6.65□□□□□ -1.34
LIG3-202ENST00000378526 ZNF581Q9P0T4 197 aa6.65□□□□□ -1.34
LIG3-202ENST00000378526 BEAN1Q3B7T3 259 aa6.65□□□□□ -1.34
LIG3-202ENST00000378526 A0A1B0GU69 56 aa6.65□□□□□ -1.35
LIG3-202ENST00000378526 INSL3P51460 131 aa6.65□□□□□ -1.35
LIG3-202ENST00000378526 LYPD2Q6UXB3 125 aa6.65□□□□□ -1.35
LIG3-202ENST00000378526 MSMBP08118 114 aa6.65□□□□□ -1.35
LIG3-202ENST00000378526 PATE3B3GLJ2 98 aa6.64□□□□□ -1.35
LIG3-202ENST00000378526 H0Y9P7 68 aa6.64□□□□□ -1.35
LIG3-202ENST00000378526 IGHV4-30-4P0DP06 118 aa6.64□□□□□ -1.35
LIG3-202ENST00000378526 IGHV4-31P0DP07 118 aa6.64□□□□□ -1.35
LIG3-202ENST00000378526 ODF3Q96PU9 254 aa6.64□□□□□ -1.35
LIG3-202ENST00000378526 C6orf99Q4VX62 202 aa6.64□□□□□ -1.35
LIG3-202ENST00000378526 NTM-AS1Q6ZSK4 140 aa6.64□□□□□ -1.35
LIG3-202ENST00000378526 C1orf147Q96MC9 270 aaPredicted RBP6.64□□□□□ -1.35
LIG3-202ENST00000378526 CD164L2Q6UWJ8 174 aa6.64□□□□□ -1.35
LIG3-202ENST00000378526 SMIM11BQ8TCY0 68 aa6.63□□□□□ -1.35
LIG3-202ENST00000378526 PTPN13Q12923 2485 aa6.63□□□□□ -1.35
LIG3-202ENST00000378526 ZNF22P17026 224 aaPredicted RBP6.62□□□□□ -1.35
LIG3-202ENST00000378526 KLK5Q9Y337 293 aaPredicted RBP6.62□□□□□ -1.35
LIG3-202ENST00000378526 CTSGP08311 255 aa6.62□□□□□ -1.35
LIG3-202ENST00000378526 KAAG1Q9UBP8 84 aa6.62□□□□□ -1.35
LIG3-202ENST00000378526 GPR179Q6PRD1 2367 aa6.62□□□□□ -1.35
LIG3-202ENST00000378526 RNASE3P12724 160 aaKnown RBP6.62□□□□□ -1.35
LIG3-202ENST00000378526 I3L2K1 104 aa6.62□□□□□ -1.35
LIG3-202ENST00000378526 C10orf25Q5T742 122 aa6.62□□□□□ -1.35
LIG3-202ENST00000378526 MDFIQ99750 246 aa6.62□□□□□ -1.35
LIG3-202ENST00000378526 MAPKAPK5-AS1Q8N8E1 139 aa6.62□□□□□ -1.35
LIG3-202ENST00000378526 CPAMD8Q8IZJ3 1885 aa6.62□□□□□ -1.35
LIG3-202ENST00000378526 KLK12Q9UKR0 248 aa6.62□□□□□ -1.35
LIG3-202ENST00000378526 IGKV1D-37A0A075B6S9 117 aa6.61□□□□□ -1.35
LIG3-202ENST00000378526 GPHB5Q86YW7 130 aa6.61□□□□□ -1.35
LIG3-202ENST00000378526 TPSG1Q9NRR2 321 aa6.61□□□□□ -1.35
LIG3-202ENST00000378526 ATP1A1-AS1Q5TC04 95 aa6.61□□□□□ -1.35
LIG3-202ENST00000378526 FAM19A1Q7Z5A9 133 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms